NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
15C8H-32C2B
confEVID 15C8H-32C2B
pdbIDA 15C8
pdbIDB 32C2
pdbChainA H
pdbChainB B
identity 0.683499991893768
indelSize 2
alignment <alignment>
<seq1>EVQLQQSGAELVKPGASVKLSCTASGFNIKD-TYMHWVKQKPEQGLEWIAQIDPANGNTKYDPKFQGKATITADTSSNTAYLHLSSLTSEDSAVYYCAADPPYYGHGDYWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIV-</seq1>
<seq2>DVQLQESGPGLVKPSQSLSLTCTVTGYSISSDYAWNWIRQFPGNKLEWMGYISY-SGSTSYNPSLKSRISITRDTSKNQFFLQLSSVTTEDTATYYCARGYYGSSHSPVWGAGTTVTVSSAKTTPPPVYPLVPGSLAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIEP</seq2>
<ss_1> EEE EEE EEEEEEEE GGG- EEEEEEEE EEEEEEEEE EEEEE EEEEEEE EEEEEEE GGG EEEEEEEE EEEE EEEEE EEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEE EEEEEEE EEEEE -</ss_1>
<ss_2> EEEEE EEEEEEEE EEEEEE EEEEEEEEE - EEEEE EEEEEEE EEEEEEE EEEEEEEE EEEE EEE EEEEEEE EEEEE EEEEE EEEEEEEEEE EEEEEEE EEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>15C8</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>15C8H</entryIDChain>
<sequence>FNIKD-TYMHW</sequence>
<secondary-structure> GGG- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1815 CA PHE H 27 28.745 16.726 44.333 1.00 39.74 C </line>
<line>ATOM 1826 CA ASN H 28 28.301 16.036 40.614 1.00 44.69 C </line>
<line>ATOM 1834 CA ILE H 29 31.523 15.448 38.632 1.00 34.80 C </line>
<line>ATOM 1842 CA LYS H 30 29.799 16.733 35.508 1.00 37.50 C </line>
<line>ATOM 1851 CA ASP H 31 30.226 20.277 36.871 1.00 38.58 C </line>
<line>ATOM 1859 CA THR H 32 33.987 20.000 37.274 1.00 34.75 C </line>
<line>ATOM 1866 CA TYR H 33 37.338 18.658 36.092 1.00 27.77 C </line>
<line>ATOM 1878 CA MET H 34 38.694 15.320 37.292 1.00 17.91 C </line>
<line>ATOM 1886 CA HIS H 35 42.413 14.730 37.678 1.00 8.90 C </line>
<line>ATOM 1896 CA TRP H 36 44.684 11.816 38.471 1.00 9.70 C </line>
</atom-coordinate>
<distance-map>
<line> TRP HIS MET TYR THR ASP LYS ILE ASN PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 17.68 15.33 12.27 12.06 9.38 8.40 8.89 6.47 3.81 </line>
<line>ASN CA 17.05 14.47 10.93 10.44 7.69 5.98 5.37 3.83 </line>
<line>ILE CA 13.65 10.96 7.30 7.11 5.35 5.30 3.79 </line>
<line>LYS CA 15.95 12.96 9.18 7.80 5.60 3.82 </line>
<line>ASP CA 16.83 13.41 9.82 7.34 3.79 </line>
<line>THR CA 13.52 9.95 6.64 3.80 </line>
<line>TYR CA 10.32 6.61 3.80 </line>
<line>MET CA 7.04 3.79 </line>
<line>HIS CA 3.78 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>PHE CA 266</line>
<line>ASN CA 275</line>
<line>ILE CA 349</line>
<line>LYS CA 284</line>
<line>ASP CA 253</line>
<line>THR CA 327</line>
<line>TYR CA 379</line>
<line>MET CA 463</line>
<line>HIS CA 472</line>
<line>TRP CA 504</line>
</n14>
</entryChain>
<entryChain>
<pdbID>32C2</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>32C2B</entryIDChain>
<sequence>YSISSDYAWNW</sequence>
<secondary-structure> EE</secondary-structure>
<atom-coordinate>
<line>ATOM 1859 CA TYR B 27 97.594 -6.122 12.146 1.00 37.98 C </line>
<line>ATOM 1871 CA SER B 28 94.971 -8.367 13.776 1.00 37.27 C </line>
<line>ATOM 1877 CA ILE B 29 93.283 -7.537 17.096 1.00 41.60 C </line>
<line>ATOM 1885 CA SER B 30 93.196 -11.129 18.328 1.00 34.17 C </line>
<line>ATOM 1891 CA SER B 31 96.978 -11.363 18.025 1.00 28.10 C </line>
<line>ATOM 1897 CA ASP B 32 98.705 -9.404 20.820 1.00 45.18 C </line>
<line>ATOM 1905 CA TYR B 33 98.997 -6.118 22.726 1.00 54.37 C </line>
<line>ATOM 1917 CA ALA B 34 96.161 -4.389 24.582 1.00 35.01 C </line>
<line>ATOM 1922 CA TRP B 35 93.993 -1.907 22.676 1.00 32.27 C </line>
<line>ATOM 1936 CA ASN B 36 93.302 1.113 24.832 1.00 36.31 C </line>
<line>ATOM 1944 CA TRP B 37 91.733 4.571 24.615 1.00 32.17 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ASN TRP ALA TYR ASP SER SER ILE SER TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 17.44 15.22 11.90 12.64 10.67 9.34 7.90 9.09 6.71 3.82 </line>
<line>SER CA 17.19 14.66 11.04 11.58 10.07 8.04 5.57 5.61 3.82 </line>
<line>ILE CA 14.34 11.60 7.96 8.62 8.15 6.84 5.40 3.80 </line>
<line>SER CA 16.98 13.86 10.23 9.66 8.84 6.29 3.80 </line>
<line>SER CA 18.02 14.68 10.95 9.61 7.33 3.83 </line>
<line>ASP CA 16.07 12.49 9.05 6.77 3.81 </line>
<line>TYR CA 13.06 9.44 6.54 3.80 </line>
<line>ALA CA 9.99 6.21 3.81 </line>
<line>TRP CA 7.13 3.77 </line>
<line>ASN CA 3.80 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>TYR CA 270</line>
<line>SER CA 286</line>
<line>ILE CA 367</line>
<line>SER CA 274</line>
<line>SER CA 245</line>
<line>ASP CA 288</line>
<line>TYR CA 336</line>
<line>ALA CA 404</line>
<line>TRP CA 508</line>
<line>ASN CA 519</line>
<line>TRP CA 520</line>
</n14>
</entryChain>
<parallel>
<x>-63.31999969482422</x>
<y>24.516000747680664</y>
<z>19.658000946044922</z>
</parallel>
<rotation>
<x>0.07900000363588333</x>
<y>0.8960000276565552</y>
<z>0.43700000643730164</z>
<x>0.7590000033378601</x>
<y>-0.33799999952316284</y>
<z>0.5559999942779541</z>
<x>0.6460000276565552</x>
<y>0.2879999876022339</y>
<z>-0.7070000171661377</z>
</rotation>
<rmsd>1.170760989189148</rmsd>
<dmax>2.3430280685424805</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>32C2</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>32C2B</entryIDChain>
<sequence>GYISY-SGSTS</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2064 CA GLY B 50 91.038 1.701 29.691 1.00 32.14 C </line>
<line>ATOM 2068 CA TYR B 51 91.947 -1.161 27.339 1.00 36.34 C </line>
<line>ATOM 2080 CA ILE B 52 90.920 -4.434 25.704 1.00 36.98 C </line>
<line>ATOM 2088 CA SER B 53 93.323 -7.387 25.596 1.00 28.87 C </line>
<line>ATOM 2094 CA TYR B 54 93.618 -9.442 22.411 1.00 33.06 C </line>
<line>ATOM 2106 CA SER B 55 92.219 -12.046 24.783 1.00 28.09 C </line>
<line>ATOM 2112 CA GLY B 56 89.091 -9.988 24.928 1.00 26.45 C </line>
<line>ATOM 2116 CA SER B 57 89.602 -9.070 28.572 1.00 28.60 C </line>
<line>ATOM 2122 CA THR B 58 89.217 -5.422 29.728 1.00 35.63 C </line>
<line>ATOM 2129 CA SER B 59 90.571 -3.033 32.357 1.00 33.89 C </line>
</atom-coordinate>
<distance-map>
<line> SER THR SER GLY SER TYR SER ILE TYR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.45 7.35 10.92 12.77 14.64 13.56 10.23 7.32 3.81 </line>
<line>TYR CA 5.53 5.60 8.34 9.59 11.18 9.78 6.61 3.80 </line>
<line>ILE CA 6.81 4.48 5.61 5.90 7.78 6.57 3.81 </line>
<line>SER CA 8.50 6.15 5.05 5.01 4.86 3.80 </line>
<line>TYR CA 12.22 9.44 7.36 5.21 3.79 </line>
<line>SER CA 11.89 8.79 5.48 3.75 </line>
<line>GLY CA 10.28 6.63 3.79 </line>
<line>SER CA 7.19 3.85 </line>
<line>THR CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLY CA 405</line>
<line>TYR CA 442</line>
<line>ILE CA 395</line>
<line>SER CA 335</line>
<line>TYR CA 312</line>
<line>SER CA 239</line>
<line>GLY CA 268</line>
<line>SER CA 241</line>
<line>THR CA 312</line>
<line>SER CA 297</line>
</n14>
</entryChain>
<entryChain>
<pdbID>15C8</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>15C8H</entryIDChain>
<sequence>AQIDPANGNTK</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2012 CA ALA H 49 45.693 13.609 33.092 1.00 6.05 C </line>
<line>ATOM 2017 CA GLN H 50 42.448 15.544 33.291 1.00 15.39 C </line>
<line>ATOM 2026 CA ILE H 51 38.977 14.977 31.896 1.00 18.46 C </line>
<line>ATOM 2034 CA ASP H 52 35.742 16.920 31.523 1.00 22.63 C </line>
<line>ATOM 2042 CA PRO H 52A 33.094 14.394 32.633 1.00 29.67 C </line>
<line>ATOM 2049 CA ALA H 53 30.689 16.609 30.711 1.00 41.07 C </line>
<line>ATOM 2054 CA ASN H 54 32.050 15.922 27.236 1.00 39.16 C </line>
<line>ATOM 2062 CA GLY H 55 34.766 13.351 27.789 1.00 40.64 C </line>
<line>ATOM 2066 CA ASN H 56 37.415 15.812 26.635 1.00 39.54 C </line>
<line>ATOM 2074 CA THR H 57 40.764 14.716 28.000 1.00 29.31 C </line>
<line>ATOM 2081 CA LYS H 58 44.231 16.183 28.582 1.00 29.00 C </line>
</atom-coordinate>
<distance-map>
<line> LYS THR ASN GLY ASN ALA PRO ASP ILE GLN ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 5.39 7.17 10.73 12.15 15.03 15.49 12.63 10.60 6.96 3.78 </line>
<line>GLN CA 5.08 5.61 8.35 9.70 12.04 12.09 9.45 7.07 3.78 </line>
<line>ILE CA 6.33 4.29 5.55 6.10 8.40 8.53 5.96 3.79 </line>
<line>ASP CA 9.01 6.52 5.28 5.26 5.75 5.13 3.82 </line>
<line>PRO CA 11.99 8.97 7.53 5.23 5.71 3.79 </line>
<line>ALA CA 13.71 10.60 7.90 5.98 3.79 </line>
<line>ASN CA 12.26 8.83 5.40 3.78 </line>
<line>GLY CA 9.91 6.15 3.80 </line>
<line>ASN CA 7.10 3.78 </line>
<line>THR CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ALA CA 380</line>
<line>GLN CA 380</line>
<line>ILE CA 354</line>
<line>ASP CA 301</line>
<line>PRO CA 320</line>
<line>ALA CA 226</line>
<line>ASN CA 185</line>
<line>GLY CA 243</line>
<line>ASN CA 213</line>
<line>THR CA 276</line>
<line>LYS CA 272</line>
</n14>
</entryChain>
<parallel>
<x>53.79199981689453</x>
<y>-21.60700035095215</y>
<z>-4.164000034332275</z>
</parallel>
<rotation>
<x>-0.5789999961853027</x>
<y>0.6449999809265137</y>
<z>0.49900001287460327</z>
<x>-0.40799999237060547</x>
<y>0.3009999990463257</y>
<z>-0.8619999885559082</z>
<x>0.7059999704360962</x>
<y>0.703000009059906</y>
<z>-0.08900000154972076</z>
</rotation>
<rmsd>2.3623499870300293</rmsd>
<dmax>3.5498149394989014</dmax>
</indel>