NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DEAA-2RI1A
confEVID 1DEAA-2RI1A
pdbIDA 1DEA
pdbIDB 2RI1
pdbChainA A
pdbChainB A
identity 0.335999995470047
indelSize 3
alignment <alignment>
<seq1>-MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL</seq1>
<seq2>SMKTIKVKNKTEGSKVAFRMLEEEITF------GAKTLGLATGSTPLELYKEIRES----HLDFSDMVSINLDEYVGLSADDKQSYAYFMKQNLFAAKPFK--KSYLPNGLAADLAKETEYYDQILAQY-PIDLQILGIGRNAHIGFNEPGTAFSSQTHLVDLTPSTIAANSRFFE-KAEDVPKQAISMGLASIMSAKMILLMAFGEEKAEAVAAMVKGPVTEEIPASILQTHPKVILIVDEKAGAGI-------------------</seq2>
<ss_1>- EEE HHHHHHHHHHHHHHHHHHH EEEEE GGGHHHHHHHHHHH EEEEEEEE HHHHHIIIIGGG HHHHHHHHHHHHHHH EEEE EEE HHHHHHGGG GGG EEEEE HHHHH EEEEE GGGHHHHHHH GGGGGGG EEEEE HHHHHHHHHH HHHH </ss_1>
<ss_2> EEEEE HHHHHHHHHHHHHHHHH ------ EEEE HHHHHHH ---- EEEEEEEE HHHHHIIIII --EEE HHHHHHHHHHHHHH - EEEE EEE HHHHHHGGGG - GGG EEEEE HHHGGG EEEEEE HHHHHHH GGGGG EEEEEE -------------------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2RI1</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2RI1A</entryIDChain>
<sequence>EIRES----HLDFS</sequence>
<secondary-structure>HHH ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 357 CA GLU A 45 53.065 28.967 -4.201 1.00 3.95 C </line>
<line>ATOM 366 CA ILE A 46 56.057 30.553 -2.352 1.00 2.54 C </line>
<line>ATOM 374 CA ARG A 47 57.500 27.047 -1.678 1.00 4.55 C </line>
<line>ATOM 385 CA GLU A 48 57.365 26.185 -5.344 1.00 6.33 C </line>
<line>ATOM 394 CA SER A 49 58.630 29.613 -6.468 1.00 5.66 C </line>
<line>ATOM 400 CA HIS A 50 62.027 31.140 -7.136 1.00 4.88 C </line>
<line>ATOM 410 CA LEU A 51 61.698 33.603 -4.149 1.00 4.53 C </line>
<line>ATOM 418 CA ASP A 52 64.693 33.614 -1.834 1.00 6.62 C </line>
<line>ATOM 426 CA PHE A 53 64.275 34.752 1.785 1.00 5.27 C </line>
<line>ATOM 437 CA SER A 54 67.892 34.225 2.828 1.00 7.16 C </line>
</atom-coordinate>
<distance-map>
<line> SER PHE ASP LEU HIS SER GLU ARG ILE GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 17.23 13.96 12.74 9.80 9.68 6.04 5.25 5.45 3.86 </line>
<line>ILE CA 13.43 10.11 9.18 6.66 7.67 4.94 5.45 3.85 </line>
<line>ARG CA 13.41 10.83 9.74 8.17 8.19 5.55 3.77 </line>
<line>GLU CA 15.56 13.11 11.01 8.67 7.04 3.82 </line>
<line>SER CA 13.91 11.24 8.62 5.54 3.78 </line>
<line>HIS CA 11.97 9.88 6.43 3.89 </line>
<line>LEU CA 9.35 6.57 3.79 </line>
<line>ASP CA 5.69 3.82 </line>
<line>PHE CA 3.80 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLU CA 315</line>
<line>ILE CA 368</line>
<line>ARG CA 293</line>
<line>GLU CA 221</line>
<line>SER CA 243</line>
<line>HIS CA 209</line>
<line>LEU CA 307</line>
<line>ASP CA 284</line>
<line>PHE CA 347</line>
<line>SER CA 228</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DEA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DEAA</entryIDChain>
<sequence>ALVEMHKAGQVSFK</sequence>
<secondary-structure>HHHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 391 CA ALA A 51 25.364 -24.895 21.409 1.00 22.43 C </line>
<line>ATOM 396 CA LEU A 52 24.972 -23.468 17.847 1.00 24.97 C </line>
<line>ATOM 404 CA VAL A 53 28.719 -23.931 17.113 1.00 28.16 C </line>
<line>ATOM 411 CA GLU A 54 28.529 -27.557 18.418 1.00 31.94 C </line>
<line>ATOM 420 CA MET A 55 25.526 -28.297 16.168 1.00 31.67 C </line>
<line>ATOM 428 CA HIS A 56 27.310 -26.725 13.199 1.00 31.13 C </line>
<line>ATOM 438 CA LYS A 57 30.401 -28.881 13.787 1.00 36.40 C </line>
<line>ATOM 447 CA ALA A 58 28.085 -31.904 14.085 1.00 30.31 C </line>
<line>ATOM 452 CA GLY A 59 26.666 -31.170 10.606 1.00 28.60 C </line>
<line>ATOM 456 CA GLN A 60 23.199 -30.040 11.819 1.00 33.39 C </line>
<line>ATOM 465 CA VAL A 61 23.169 -26.497 10.353 1.00 30.43 C </line>
<line>ATOM 472 CA SER A 62 24.946 -24.532 7.702 1.00 29.87 C </line>
<line>ATOM 478 CA PHE A 63 25.131 -20.782 7.904 1.00 27.24 C </line>
<line>ATOM 489 CA LYS A 64 26.258 -20.499 4.234 1.00 29.94 C </line>
</atom-coordinate>
<distance-map>
<line> LYS PHE SER VAL GLN GLY ALA LYS HIS MET GLU VAL LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 17.75 14.12 13.72 11.39 11.10 12.56 10.50 9.97 8.63 6.25 5.10 5.54 3.86 </line>
<line>LEU CA 13.99 10.30 10.20 8.28 9.09 10.71 9.75 8.68 6.14 5.14 5.45 3.85 </line>
<line>VAL CA 13.55 10.37 10.16 9.12 9.79 9.95 8.55 6.20 5.01 5.49 3.86 </line>
<line>GLU CA 16.00 12.96 11.70 9.74 8.84 8.81 6.15 5.17 5.42 3.82 </line>
<line>MET CA 14.27 11.18 9.28 6.53 5.23 6.36 4.89 5.46 3.80 </line>
<line>HIS CA 10.97 8.25 6.37 5.03 5.46 5.19 5.31 3.81 </line>
<line>LYS CA 13.37 11.31 9.26 8.35 7.56 5.41 3.82 </line>
<line>ALA CA 15.18 13.06 10.24 8.21 5.70 3.83 </line>
<line>GLY CA 12.44 10.84 7.45 5.84 3.84 </line>
<line>GLN CA 12.57 10.24 7.10 3.83 </line>
<line>VAL CA 9.11 6.52 3.75 </line>
<line>SER CA 5.48 3.76 </line>
<line>PHE CA 3.85 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ALA CA 342</line>
<line>LEU CA 415</line>
<line>VAL CA 332</line>
<line>GLU CA 261</line>
<line>MET CA 277</line>
<line>HIS CA 286</line>
<line>LYS CA 192</line>
<line>ALA CA 157</line>
<line>GLY CA 176</line>
<line>GLN CA 235</line>
<line>VAL CA 324</line>
<line>SER CA 334</line>
<line>PHE CA 415</line>
<line>LYS CA 312</line>
</n14>
</entryChain>
<parallel>
<x>33.32600021362305</x>
<y>56.242000579833984</y>
<z>-19.249000549316406</z>
</parallel>
<rotation>
<x>0.2630000114440918</x>
<y>-0.902999997138977</y>
<z>0.3409999907016754</z>
<x>-0.28700000047683716</x>
<y>0.2639999985694885</y>
<z>0.9210000038146973</z>
<x>-0.9210000038146973</x>
<y>-0.3400000035762787</y>
<z>-0.1899999976158142</z>
</rotation>
<rmsd>0.7930499911308289</rmsd>
<dmax>1.4446790218353271</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2RI1</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2RI1A</entryIDChain>
<sequence>ILAQY-PIDLQ</sequence>
<secondary-structure>HHHH - EE</secondary-structure>
<atom-coordinate>
<line>ATOM 914 CA ILE A 112 62.436 42.680 18.244 1.00 2.00 C </line>
<line>ATOM 922 CA LEU A 113 59.636 44.575 16.484 1.00 2.00 C </line>
<line>ATOM 930 CA ALA A 114 61.495 47.842 17.188 1.00 2.00 C </line>
<line>ATOM 935 CA GLN A 115 64.673 46.255 15.878 1.00 2.00 C </line>
<line>ATOM 944 CA TYR A 116 63.091 44.745 12.750 1.00 2.00 C </line>
<line>ATOM 956 CA PRO A 117 60.114 46.896 11.731 1.00 2.57 C </line>
<line>ATOM 963 CA ILE A 118 57.790 44.952 9.374 1.00 2.00 C </line>
<line>ATOM 971 CA ASP A 119 57.766 45.985 5.701 1.00 2.00 C </line>
<line>ATOM 979 CA LEU A 120 54.848 43.793 4.678 1.00 2.00 C </line>
<line>ATOM 987 CA GLN A 121 52.451 41.977 7.057 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLN LEU ASP ILE PRO TYR GLN ALA LEU ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 15.01 15.58 13.79 10.27 8.10 5.91 4.84 5.35 3.81 </line>
<line>LEU CA 12.13 12.76 11.03 7.36 5.31 5.09 5.34 3.82 </line>
<line>ALA CA 14.79 14.73 12.22 9.12 5.71 5.64 3.79 </line>
<line>GLN CA 15.67 15.10 12.30 9.56 6.20 3.82 </line>
<line>TYR CA 12.38 11.58 8.92 6.29 3.81 </line>
<line>PRO CA 10.24 9.33 6.53 3.84 </line>
<line>ILE CA 6.54 5.66 3.82 </line>
<line>ASP CA 6.79 3.79 </line>
<line>LEU CA 3.83 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>ILE CA 314</line>
<line>LEU CA 361</line>
<line>ALA CA 249</line>
<line>GLN CA 229</line>
<line>TYR CA 308</line>
<line>PRO CA 329</line>
<line>ILE CA 403</line>
<line>ASP CA 365</line>
<line>LEU CA 438</line>
<line>GLN CA 509</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DEA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DEAA</entryIDChain>
<sequence>KIRSYGKIHLF</sequence>
<secondary-structure>HHHHH EE</secondary-structure>
<atom-coordinate>
<line>ATOM 989 CA LYS A 124 20.271 -2.909 4.389 1.00 20.28 C </line>
<line>ATOM 998 CA ILE A 125 17.585 -4.781 6.433 1.00 19.51 C </line>
<line>ATOM 1006 CA ARG A 126 14.930 -3.547 3.996 1.00 28.42 C </line>
<line>ATOM 1017 CA SER A 127 16.832 -4.820 0.919 1.00 26.64 C </line>
<line>ATOM 1023 CA TYR A 128 16.522 -8.328 2.337 1.00 25.63 C </line>
<line>ATOM 1035 CA GLY A 129 12.898 -7.669 3.232 1.00 24.65 C </line>
<line>ATOM 1039 CA LYS A 130 12.764 -8.833 6.827 1.00 25.08 C </line>
<line>ATOM 1048 CA ILE A 131 14.553 -10.398 9.722 1.00 15.31 C </line>
<line>ATOM 1056 CA HIS A 132 13.034 -13.855 10.143 1.00 12.94 C </line>
<line>ATOM 1066 CA LEU A 133 14.161 -14.387 13.756 1.00 11.66 C </line>
<line>ATOM 1074 CA PHE A 134 15.658 -11.743 16.049 1.00 7.66 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LEU HIS ILE LYS GLY TYR SER ARG ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 15.34 16.03 14.33 10.83 9.87 8.85 6.90 5.25 5.39 3.86 </line>
<line>ILE CA 12.03 12.55 10.81 7.18 6.31 6.37 5.52 5.57 3.81 </line>
<line>ARG CA 14.59 14.61 12.15 8.94 6.38 4.66 5.31 3.83 </line>
<line>SER CA 16.68 16.23 13.46 10.67 8.22 5.38 3.80 </line>
<line>TYR CA 14.16 13.14 10.18 7.92 5.88 3.79 </line>
<line>GLY CA 13.73 12.55 9.28 7.23 3.78 </line>
<line>LYS CA 10.09 8.99 6.02 3.75 </line>
<line>ILE CA 6.56 5.69 3.80 </line>
<line>HIS CA 6.80 3.82 </line>
<line>LEU CA 3.81 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LYS CA 300</line>
<line>ILE CA 373</line>
<line>ARG CA 264</line>
<line>SER CA 223</line>
<line>TYR CA 294</line>
<line>GLY CA 261</line>
<line>LYS CA 338</line>
<line>ILE CA 441</line>
<line>HIS CA 408</line>
<line>LEU CA 475</line>
<line>PHE CA 534</line>
</n14>
</entryChain>
<parallel>
<x>45.06399917602539</x>
<y>52.67499923706055</y>
<z>7.822999954223633</z>
</parallel>
<rotation>
<x>0.15199999511241913</x>
<y>-0.949999988079071</y>
<z>0.27300000190734863</z>
<x>-0.19099999964237213</x>
<y>0.24199999868869781</y>
<z>0.9509999752044678</z>
<x>-0.9700000286102295</x>
<y>-0.19699999690055847</y>
<z>-0.14399999380111694</z>
</rotation>
<rmsd>0.8938390016555786</rmsd>
<dmax>1.3653069734573364</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2RI1</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2RI1A</entryIDChain>
<sequence>SRFFE-KAEDV</sequence>
<secondary-structure>GGG - GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1258 CA SER A 158 42.212 19.643 22.247 1.00 6.17 C </line>
<line>ATOM 1264 CA ARG A 159 41.645 17.033 19.482 1.00 10.94 C </line>
<line>ATOM 1275 CA PHE A 160 45.398 17.150 18.790 1.00 13.49 C </line>
<line>ATOM 1286 CA PHE A 161 46.762 16.279 22.265 1.00 14.76 C </line>
<line>ATOM 1297 CA GLU A 162 46.850 12.795 23.910 1.00 19.60 C </line>
<line>ATOM 1306 CA LYS A 163 46.316 14.349 27.406 1.00 21.62 C </line>
<line>ATOM 1315 CA ALA A 164 44.056 17.324 28.355 1.00 20.25 C </line>
<line>ATOM 1320 CA GLU A 165 46.639 18.723 30.800 1.00 17.98 C </line>
<line>ATOM 1329 CA ASP A 166 48.911 19.317 27.755 1.00 12.65 C </line>
<line>ATOM 1337 CA VAL A 167 46.522 21.574 25.724 1.00 8.20 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ASP GLU ALA LYS GLU PHE PHE ARG SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 5.86 8.68 9.67 6.79 8.45 8.44 5.66 5.32 3.84 </line>
<line>ARG CA 9.13 11.25 12.49 9.20 9.58 8.04 5.87 3.82 </line>
<line>PHE CA 8.30 9.87 12.18 9.66 9.11 6.88 3.83 </line>
<line>PHE CA 6.33 6.63 8.88 6.75 5.51 3.85 </line>
<line>GLU CA 8.97 7.85 9.09 6.93 3.86 </line>
<line>LYS CA 7.42 5.62 5.55 3.85 </line>
<line>ALA CA 5.57 5.28 3.82 </line>
<line>GLU CA 5.82 3.85 </line>
<line>ASP CA 3.86 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>SER CA 218</line>
<line>ARG CA 169</line>
<line>PHE CA 211</line>
<line>PHE CA 205</line>
<line>GLU CA 142</line>
<line>LYS CA 143</line>
<line>ALA CA 170</line>
<line>GLU CA 160</line>
<line>ASP CA 224</line>
<line>VAL CA 284</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DEA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DEAA</entryIDChain>
<sequence>SRFFDNDVNQV</sequence>
<secondary-structure>GG GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 1350 CA SER A 171 31.653 -2.614 33.606 1.00 33.92 C </line>
<line>ATOM 1356 CA ARG A 172 32.041 -6.406 34.161 1.00 38.06 C </line>
<line>ATOM 1367 CA PHE A 173 33.659 -6.569 30.770 1.00 35.01 C </line>
<line>ATOM 1378 CA PHE A 174 35.885 -3.492 31.242 1.00 38.18 C </line>
<line>ATOM 1389 CA ASP A 175 37.574 -4.875 34.364 1.00 49.71 C </line>
<line>ATOM 1397 CA ASN A 176 35.060 -3.303 36.671 1.00 45.45 C </line>
<line>ATOM 1405 CA ASP A 177 35.719 0.325 35.774 1.00 42.12 C </line>
<line>ATOM 1413 CA VAL A 178 32.494 2.160 34.765 1.00 44.34 C </line>
<line>ATOM 1420 CA ASN A 179 34.642 4.998 33.424 1.00 44.79 C </line>
<line>ATOM 1428 CA GLN A 180 35.925 2.629 30.701 1.00 41.59 C </line>
<line>ATOM 1437 CA VAL A 181 32.419 1.670 29.502 1.00 31.26 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLN ASN VAL ASP ASN ASP PHE PHE ARG SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 5.98 7.36 8.18 4.98 5.47 4.63 6.38 4.93 5.26 3.85 </line>
<line>ARG CA 9.33 10.43 11.72 8.60 7.84 5.00 5.74 5.64 3.76 </line>
<line>PHE CA 8.43 9.47 11.91 9.67 8.76 6.89 5.58 3.83 </line>
<line>PHE CA 6.46 6.14 8.85 7.47 5.93 5.49 3.81 </line>
<line>ASP CA 9.65 8.51 10.34 8.69 5.70 3.76 </line>
<line>ASN CA 9.12 8.46 8.92 6.33 3.79 </line>
<line>ASP CA 7.21 5.58 5.34 3.85 </line>
<line>VAL CA 5.29 5.34 3.80 </line>
<line>ASN CA 5.60 3.83 </line>
<line>GLN CA 3.83 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>SER CA 278</line>
<line>ARG CA 250</line>
<line>PHE CA 287</line>
<line>PHE CA 257</line>
<line>ASP CA 168</line>
<line>ASN CA 176</line>
<line>ASP CA 187</line>
<line>VAL CA 225</line>
<line>ASN CA 207</line>
<line>GLN CA 263</line>
<line>VAL CA 330</line>
</n14>
</entryChain>
<parallel>
<x>10.776000022888184</x>
<y>18.72100067138672</y>
<z>-9.355999946594238</z>
</parallel>
<rotation>
<x>0.7289999723434448</x>
<y>-0.6800000071525574</y>
<z>0.0820000022649765</z>
<x>0.19900000095367432</x>
<y>0.32499998807907104</y>
<z>0.9240000247955322</z>
<x>-0.6549999713897705</x>
<y>-0.6579999923706055</y>
<z>0.3720000088214874</z>
</rotation>
<rmsd>1.2553850412368774</rmsd>
<dmax>2.0606589317321777</dmax>
</indel>