NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DFFA-3CPMA
confEVID 1DFFA-3CPMA
pdbIDA 1DFF
pdbIDB 3CPM
pdbChainA A
pdbChainB A
identity 0.323500007390976
indelSize 3
alignment <alignment>
<seq1>-----SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRD--ERLVLINPELLEKS-GETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQ---QRIRQKVEKLDRL---------</seq1>
<seq2>DVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYEEKTGLPSPER</seq2>
<ss_1>----- GGGG HHHHHHHHHHHHHHHH EEEEE EEEEEEE -- EEEE EEE- EEEEE EEEEEEEE EEEEEEEEHHHHHHHHHHH GGGG HHHH---HHHHHHHHHHH ---------</ss_1>
<ss_2> HHHHHHHHHHHHHHHH EEEEE EEEEEEE EEEE EEEEEEEEE EEEEEEE EEEEEEEE EEEEEEE HHHHHHHHHHHHH GGGG HHHHGGGHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DFF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DFFA</entryIDChain>
<sequence>SENRD--ERLVL</sequence>
<secondary-structure> -- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 496 CA SER A 63 21.257 -14.191 42.839 1.00 21.73 C </line>
<line>ATOM 502 CA GLU A 64 19.113 -16.785 44.586 1.00 39.37 C </line>
<line>ATOM 511 CA ASN A 65 17.967 -14.209 47.197 1.00 43.51 C </line>
<line>ATOM 519 CA ARG A 66 17.683 -10.393 46.914 1.00 41.16 C </line>
<line>ATOM 530 CA ASP A 67 21.368 -9.955 47.686 1.00 37.09 C </line>
<line>ATOM 538 CA GLU A 68 23.219 -8.949 44.562 1.00 28.96 C </line>
<line>ATOM 547 CA ARG A 69 21.338 -5.953 43.180 1.00 14.35 C </line>
<line>ATOM 558 CA LEU A 70 22.982 -4.652 39.976 1.00 6.63 C </line>
<line>ATOM 566 CA VAL A 71 22.104 -1.240 38.514 1.00 2.00 C </line>
<line>ATOM 573 CA LEU A 72 22.991 -0.254 34.990 1.00 8.80 C </line>
</atom-coordinate>
<distance-map>
<line> LEU VAL LEU ARG GLU ASP ARG ASN GLU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 16.09 13.68 10.11 8.25 5.86 6.44 6.62 5.46 3.79 </line>
<line>GLU CA 19.50 16.95 13.54 11.15 8.85 7.83 6.95 3.84 </line>
<line>ASN CA 19.21 16.15 12.99 9.78 7.89 5.47 3.84 </line>
<line>ARG CA 16.53 13.19 10.45 6.86 6.19 3.79 </line>
<line>ASP CA 16.06 12.67 9.50 6.03 3.77 </line>
<line>GLU CA 12.93 9.86 6.29 3.80 </line>
<line>ARG CA 10.11 6.68 3.83 </line>
<line>LEU CA 6.65 3.81 </line>
<line>VAL CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>SER CA 203</line>
<line>GLU CA 153</line>
<line>ASN CA 155</line>
<line>ARG CA 206</line>
<line>ASP CA 158</line>
<line>GLU CA 223</line>
<line>ARG CA 311</line>
<line>LEU CA 413</line>
<line>VAL CA 445</line>
<line>LEU CA 491</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CPM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3CPMA</entryIDChain>
<sequence>AGEPGEGKEIVL</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 538 CA ALA A 141 23.200 10.921 -46.138 1.00 31.62 C </line>
<line>ATOM 543 CA GLY A 142 25.989 8.461 -46.916 1.00 37.02 C </line>
<line>ATOM 547 CA GLU A 143 28.327 11.321 -47.808 1.00 40.97 C </line>
<line>ATOM 556 CA PRO A 144 31.062 12.690 -45.535 1.00 43.37 C </line>
<line>ATOM 563 CA GLY A 145 30.260 16.070 -44.010 1.00 47.83 C </line>
<line>ATOM 567 CA GLU A 146 26.834 15.989 -45.664 1.00 52.36 C </line>
<line>ATOM 576 CA GLY A 147 24.546 14.281 -43.167 1.00 46.68 C </line>
<line>ATOM 580 CA LYS A 148 24.353 13.171 -39.541 1.00 40.96 C </line>
<line>ATOM 589 CA GLU A 149 27.062 10.853 -38.227 1.00 34.47 C </line>
<line>ATOM 598 CA ILE A 150 25.808 8.622 -35.434 1.00 27.49 C </line>
<line>ATOM 606 CA VAL A 151 27.931 6.057 -33.629 1.00 20.62 C </line>
<line>ATOM 613 CA LEU A 152 26.600 3.716 -30.938 1.00 18.22 C </line>
</atom-coordinate>
<distance-map>
<line> LEU VAL ILE GLU LYS GLY GLU GLY PRO GLU GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 17.16 14.23 11.25 8.80 7.06 4.68 6.25 8.99 8.08 5.41 3.80 </line>
<line>GLY CA 16.68 13.64 11.48 9.08 8.90 7.07 7.68 9.20 6.75 3.80 </line>
<line>GLU CA 18.59 15.13 12.91 9.68 9.36 6.68 5.35 6.38 3.81 </line>
<line>PRO CA 17.71 13.98 12.09 8.53 9.01 7.11 5.36 3.79 </line>
<line>GLY CA 18.35 14.61 12.20 8.42 7.95 6.05 3.81 </line>
<line>GLU CA 19.17 15.64 12.65 9.04 7.18 3.79 </line>
<line>GLY CA 16.29 13.04 9.67 6.52 3.80 </line>
<line>LYS CA 12.98 9.92 6.30 3.80 </line>
<line>GLU CA 10.21 6.70 3.79 </line>
<line>ILE CA 6.70 3.79 </line>
<line>VAL CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ALA CA 237</line>
<line>GLY CA 270</line>
<line>GLU CA 209</line>
<line>PRO CA 212</line>
<line>GLY CA 162</line>
<line>GLU CA 148</line>
<line>GLY CA 187</line>
<line>LYS CA 240</line>
<line>GLU CA 313</line>
<line>ILE CA 405</line>
<line>VAL CA 464</line>
<line>LEU CA 502</line>
</n14>
</entryChain>
<parallel>
<x>-6.392000198364258</x>
<y>-22.14900016784668</y>
<z>87.56900024414062</z>
</parallel>
<rotation>
<x>-0.7699999809265137</x>
<y>0.44200000166893005</y>
<z>0.460999995470047</z>
<x>0.5580000281333923</x>
<y>0.11299999803304672</y>
<z>0.8220000267028809</z>
<x>0.3109999895095825</x>
<y>0.8899999856948853</y>
<z>-0.33399999141693115</z>
</rotation>
<rmsd>1.737671971321106</rmsd>
<dmax>2.75714111328125</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1DFF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DFFA</entryIDChain>
<sequence>LLEKS-GETGI</sequence>
<secondary-structure> EEE- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 613 CA LEU A 77 28.947 -2.301 25.511 1.00 9.93 C </line>
<line>ATOM 621 CA LEU A 78 32.759 -2.307 25.504 1.00 8.04 C </line>
<line>ATOM 629 CA GLU A 79 33.539 -5.879 24.408 1.00 18.93 C </line>
<line>ATOM 638 CA LYS A 80 32.013 -9.262 23.434 1.00 20.77 C </line>
<line>ATOM 647 CA SER A 81 33.328 -12.693 22.511 1.00 14.28 C </line>
<line>ATOM 653 CA GLY A 82 32.238 -16.276 21.986 1.00 12.07 C </line>
<line>ATOM 657 CA GLU A 83 28.742 -17.545 21.483 1.00 5.79 C </line>
<line>ATOM 666 CA THR A 84 26.199 -19.372 23.691 1.00 7.39 C </line>
<line>ATOM 673 CA GLY A 85 22.480 -19.762 24.160 1.00 7.09 C </line>
<line>ATOM 677 CA ILE A 86 20.069 -20.384 27.007 1.00 5.56 C </line>
</atom-coordinate>
<distance-map>
<line> ILE GLY THR GLU GLY SER LYS GLU LEU LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 20.20 18.67 17.39 15.77 14.78 11.67 7.88 5.92 3.81 </line>
<line>LEU CA 22.14 20.30 18.37 16.26 14.41 10.82 7.29 3.82 </line>
<line>GLU CA 19.96 17.75 15.38 12.95 10.75 7.08 3.84 </line>
<line>LYS CA 16.71 14.20 11.67 9.12 7.17 3.79 </line>
<line>SER CA 15.97 13.05 9.84 6.76 3.78 </line>
<line>GLY CA 13.79 10.59 7.00 3.75 </line>
<line>GLU CA 10.67 7.16 3.83 </line>
<line>THR CA 7.04 3.77 </line>
<line>GLY CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LEU CA 308</line>
<line>LEU CA 211</line>
<line>GLU CA 217</line>
<line>LYS CA 242</line>
<line>SER CA 188</line>
<line>GLY CA 166</line>
<line>GLU CA 191</line>
<line>THR CA 218</line>
<line>GLY CA 249</line>
<line>ILE CA 245</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CPM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3CPMA</entryIDChain>
<sequence>IKKYSDKLVPF</sequence>
<secondary-structure> EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 652 CA ILE A 157 16.571 -1.148 -27.616 1.00 25.06 C </line>
<line>ATOM 660 CA LYS A 158 14.411 0.052 -24.732 1.00 32.06 C </line>
<line>ATOM 669 CA LYS A 159 11.269 0.349 -26.834 1.00 34.67 C </line>
<line>ATOM 678 CA TYR A 160 10.187 -0.025 -30.439 1.00 35.87 C </line>
<line>ATOM 690 CA SER A 161 7.117 1.037 -32.406 1.00 24.27 C </line>
<line>ATOM 696 CA ASP A 162 3.988 -1.078 -32.512 1.00 17.56 C </line>
<line>ATOM 704 CA LYS A 163 3.458 -0.060 -36.157 1.00 14.27 C </line>
<line>ATOM 713 CA LEU A 164 5.167 -1.934 -38.987 1.00 14.48 C </line>
<line>ATOM 721 CA VAL A 165 6.466 -0.457 -42.209 1.00 17.17 C </line>
<line>ATOM 728 CA PRO A 166 8.137 -2.047 -45.251 1.00 20.13 C </line>
<line>ATOM 735 CA PHE A 167 11.405 -0.966 -46.859 1.00 24.14 C </line>
</atom-coordinate>
<distance-map>
<line> PHE PRO VAL LEU LYS ASP SER TYR LYS LYS ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 19.93 19.57 17.76 16.12 15.69 13.50 10.82 7.07 5.56 3.80 </line>
<line>LYS CA 22.35 21.56 19.20 17.11 15.83 13.06 10.63 7.10 3.79 </line>
<line>LYS CA 20.07 18.83 16.13 13.79 12.17 9.34 6.98 3.78 </line>
<line>TYR CA 16.49 15.09 12.35 10.10 8.83 6.62 3.80 </line>
<line>SER CA 15.21 13.25 9.94 7.48 5.35 3.78 </line>
<line>ASP CA 16.15 13.43 10.03 6.64 3.82 </line>
<line>LYS CA 13.36 10.42 6.77 3.80 </line>
<line>LEU CA 10.09 6.93 3.77 </line>
<line>VAL CA 6.80 3.82 </line>
<line>PRO CA 3.80 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ILE CA 328</line>
<line>LYS CA 224</line>
<line>LYS CA 226</line>
<line>TYR CA 270</line>
<line>SER CA 229</line>
<line>ASP CA 156</line>
<line>LYS CA 159</line>
<line>LEU CA 208</line>
<line>VAL CA 230</line>
<line>PRO CA 248</line>
<line>PHE CA 274</line>
</n14>
</entryChain>
<parallel>
<x>21.639999389648438</x>
<y>-10.430999755859375</y>
<z>55.98899841308594</z>
</parallel>
<rotation>
<x>-0.6039999723434448</x>
<y>0.6179999709129333</y>
<z>0.503000020980835</z>
<x>0.47999998927116394</x>
<y>-0.22200000286102295</y>
<z>0.8489999771118164</z>
<x>0.6370000243186951</x>
<y>0.7540000081062317</y>
<z>-0.16300000250339508</z>
</rotation>
<rmsd>0.7404170036315918</rmsd>
<dmax>1.1676809787750244</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1DFF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DFFA</entryIDChain>
<sequence>SPLKQ---QRIRQ</sequence>
<secondary-structure> HHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1161 CA SER A 147 11.928 -17.477 12.429 1.00 12.85 C </line>
<line>ATOM 1167 CA PRO A 148 8.818 -15.499 11.411 1.00 14.91 C </line>
<line>ATOM 1174 CA LEU A 149 6.854 -18.688 11.895 1.00 20.20 C </line>
<line>ATOM 1182 CA LYS A 150 7.916 -18.930 15.531 1.00 21.33 C </line>
<line>ATOM 1191 CA GLN A 151 7.443 -15.228 16.238 1.00 31.79 C </line>
<line>ATOM 1200 CA GLN A 152 3.849 -15.720 14.966 1.00 37.10 C </line>
<line>ATOM 1209 CA ARG A 153 3.282 -18.761 17.143 1.00 28.86 C </line>
<line>ATOM 1220 CA ILE A 154 4.789 -17.108 20.236 1.00 20.67 C </line>
<line>ATOM 1228 CA ARG A 155 2.881 -13.846 19.825 1.00 24.67 C </line>
<line>ATOM 1239 CA GLN A 156 -0.237 -15.845 19.089 1.00 36.52 C </line>
</atom-coordinate>
<distance-map>
<line> GLN ARG ILE ARG GLN GLN LYS LEU PRO SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 13.96 12.24 10.59 9.93 8.65 6.30 5.28 5.24 3.82 </line>
<line>PRO CA 11.88 10.43 9.83 8.61 6.11 5.03 5.44 3.78 </line>
<line>LEU CA 10.49 10.11 8.74 6.35 5.22 5.58 3.80 </line>
<line>LYS CA 9.42 8.34 5.94 4.91 5.21 3.80 </line>
<line>GLN CA 8.22 5.97 5.15 5.53 3.84 </line>
<line>GLN CA 5.81 5.30 5.53 3.78 </line>
<line>ARG CA 4.97 5.61 3.82 </line>
<line>ILE CA 5.31 3.80 </line>
<line>ARG CA 3.78 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>SER CA 175</line>
<line>PRO CA 161</line>
<line>LEU CA 144</line>
<line>LYS CA 215</line>
<line>GLN CA 266</line>
<line>GLN CA 220</line>
<line>ARG CA 226</line>
<line>ILE CA 305</line>
<line>ARG CA 316</line>
<line>GLN CA 241</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CPM</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3CPMA</entryIDChain>
<sequence>TDQVLDSIREELE</sequence>
<secondary-structure> HHHHGGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1234 CA THR A 228 9.129 -13.269 -45.401 1.00 21.50 C </line>
<line>ATOM 1241 CA ASP A 229 9.418 -16.689 -47.014 1.00 30.74 C </line>
<line>ATOM 1249 CA GLN A 230 8.238 -15.162 -50.305 1.00 30.01 C </line>
<line>ATOM 1258 CA VAL A 231 10.726 -12.303 -50.401 1.00 25.11 C </line>
<line>ATOM 1265 CA LEU A 232 13.379 -14.804 -49.345 1.00 21.43 C </line>
<line>ATOM 1273 CA ASP A 233 12.688 -16.974 -52.386 1.00 23.66 C </line>
<line>ATOM 1281 CA SER A 234 13.144 -13.867 -54.546 1.00 21.97 C </line>
<line>ATOM 1287 CA ILE A 235 16.830 -13.808 -53.596 1.00 19.89 C </line>
<line>ATOM 1295 CA ARG A 236 17.637 -17.459 -52.882 1.00 21.77 C </line>
<line>ATOM 1306 CA GLU A 237 19.802 -17.775 -55.996 1.00 21.59 C </line>
<line>ATOM 1315 CA GLU A 238 21.557 -14.546 -55.035 1.00 16.17 C </line>
<line>ATOM 1324 CA LEU A 239 22.542 -15.836 -51.574 1.00 16.49 C </line>
<line>ATOM 1332 CA GLU A 240 23.444 -19.169 -53.149 1.00 21.02 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LEU GLU GLU ARG ILE SER ASP LEU VAL GLN ASP THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 17.31 14.99 15.78 15.70 12.08 11.26 10.01 8.67 6.00 5.34 5.33 3.79 </line>
<line>ASP CA 15.51 13.92 14.71 13.77 10.13 10.32 8.86 6.30 4.97 5.69 3.82 </line>
<line>GLN CA 15.98 14.38 14.15 13.15 10.01 9.30 6.61 5.24 5.24 3.79 </line>
<line>VAL CA 14.71 12.39 11.99 11.98 8.97 7.05 5.05 5.44 3.80 </line>
<line>LEU CA 11.61 9.49 9.97 9.71 6.14 5.57 5.29 3.80 </line>
<line>ASP CA 11.00 9.95 9.57 8.02 5.00 5.35 3.81 </line>
<line>SER CA 11.67 10.05 8.45 7.86 5.99 3.81 </line>
<line>ILE CA 8.53 6.39 5.00 5.51 3.81 </line>
<line>ARG CA 6.06 5.33 5.34 3.81 </line>
<line>GLU CA 4.83 5.55 3.80 </line>
<line>GLU CA 5.34 3.82 </line>
<line>LEU CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>THR CA 223</line>
<line>ASP CA 173</line>
<line>GLN CA 163</line>
<line>VAL CA 241</line>
<line>LEU CA 277</line>
<line>ASP CA 207</line>
<line>SER CA 223</line>
<line>ILE CA 296</line>
<line>ARG CA 271</line>
<line>GLU CA 226</line>
<line>GLU CA 282</line>
<line>LEU CA 347</line>
<line>GLU CA 281</line>
</n14>
</entryChain>
<parallel>
<x>-6.875999927520752</x>
<y>-1.9249999523162842</y>
<z>65.77899932861328</z>
</parallel>
<rotation>
<x>-0.3100000023841858</x>
<y>0.4449999928474426</y>
<z>0.8410000205039978</z>
<x>0.6909999847412109</x>
<y>-0.5019999742507935</y>
<z>0.5199999809265137</z>
<x>0.652999997138977</x>
<y>0.7419999837875366</y>
<z>-0.15199999511241913</z>
</rotation>
<rmsd>2.8903250694274902</rmsd>
<dmax>4.530489921569824</dmax>
</indel>