NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DFID-2JJYC
confEVID 1DFID-2JJYC
pdbIDA 1DFI
pdbIDB 2JJY
pdbChainA D
pdbChainB C
identity 0.560500025749207
indelSize 3
alignment <alignment>
<seq1>GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP-GSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNE----------</seq1>
<seq2>GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPI-----DYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHCVSMGNVLLEHHHHHH</seq2>
<ss_1> EEEE HHHHHHHHHHH EEEEEE HHHHHHHHHHHHH EEE HHHHHHHHHHH EEEEEE GGG HHHH HHHHHHHHIIIIHHHHHHHHHHGGG - EEEEEE HHHH HHHHHHHHHHHHHHHHHHHH EEEEEE HHHHHH HHHHHHHHHHH GGG EEE GGG ----------</ss_1>
<ss_2> EEEE HHHHHHHHHHH EEEEEE - HHHHHHHHGGG EEE HHHHHHHHHHHHHH EEEE HHHH HHHHHHHHIIIIIHHHHHHHHH HHHH EEEEEE HHHHHHHHHHHHHHHHHHHH EEEEEE ----- HHHHHHHHHGGG GGG EEEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DFI</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1DFID</entryIDChain>
<sequence>SMLNP-GSALL</sequence>
<secondary-structure>GG - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 6504 CA SER D 133 29.102 17.462 -7.316 1.00 58.33 C </line>
<line>ATOM 6510 CA MET D 134 28.040 14.885 -10.012 1.00 25.03 C </line>
<line>ATOM 6518 CA LEU D 135 24.944 13.737 -8.168 1.00 23.43 C </line>
<line>ATOM 6526 CA ASN D 136 21.591 14.964 -9.259 1.00 29.07 C </line>
<line>ATOM 6534 CA PRO D 137 18.933 16.199 -6.858 1.00 28.14 C </line>
<line>ATOM 6541 CA GLY D 138 16.891 13.141 -5.928 1.00 18.28 C </line>
<line>ATOM 6545 CA SER D 139 19.960 10.862 -6.084 1.00 14.36 C </line>
<line>ATOM 6551 CA ALA D 140 20.162 7.917 -3.596 1.00 25.31 C </line>
<line>ATOM 6556 CA LEU D 141 23.173 6.095 -2.101 1.00 19.88 C </line>
<line>ATOM 6564 CA LEU D 142 22.857 2.677 -0.672 1.00 19.79 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU ALA SER GLY PRO ASN LEU MET SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 17.37 13.84 13.60 11.34 13.03 10.26 8.15 5.65 3.88 </line>
<line>MET CA 16.22 12.79 12.32 9.84 12.00 9.73 6.49 3.78 </line>
<line>LEU CA 13.52 9.92 8.81 6.12 8.38 6.63 3.73 </line>
<line>ASN CA 15.04 11.51 9.15 5.44 6.04 3.79 </line>
<line>PRO CA 15.38 11.95 8.99 5.49 3.79 </line>
<line>GLY CA 13.14 10.19 6.59 3.83 </line>
<line>SER CA 10.23 6.99 3.86 </line>
<line>ALA CA 6.58 3.82 </line>
<line>LEU CA 3.72 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>SER CA 262</line>
<line>MET CA 312</line>
<line>LEU CA 348</line>
<line>ASN CA 298</line>
<line>PRO CA 254</line>
<line>GLY CA 309</line>
<line>SER CA 424</line>
<line>ALA CA 496</line>
<line>LEU CA 560</line>
<line>LEU CA 546</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2JJY</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2JJYC</entryIDChain>
<sequence>SMMKNRNASMV</sequence>
<secondary-structure>HHHH EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4786 CA SER C 132 -41.309 2.420 35.043 1.00 9.54 C </line>
<line>ATOM 4792 CA MET C 133 -43.026 -1.009 35.105 1.00 9.98 C </line>
<line>ATOM 4800 CA MET C 134 -39.799 -2.773 34.163 1.00 11.38 C </line>
<line>ATOM 4808 CA LYS C 135 -37.536 -1.408 36.890 1.00 12.93 C </line>
<line>ATOM 4817 CA ASN C 136 -35.310 -4.207 38.320 1.00 12.66 C </line>
<line>ATOM 4825 CA ARG C 137 -36.870 -7.522 37.416 1.00 11.84 C </line>
<line>ATOM 4836 CA ASN C 138 -34.373 -8.684 34.820 1.00 11.28 C </line>
<line>ATOM 4844 CA ALA C 139 -36.701 -7.130 32.254 1.00 10.06 C </line>
<line>ATOM 4849 CA SER C 140 -36.086 -7.195 28.507 1.00 8.99 C </line>
<line>ATOM 4855 CA MET C 141 -36.836 -5.286 25.278 1.00 9.17 C </line>
<line>ATOM 4863 CA VAL C 142 -36.624 -6.789 21.745 1.00 9.05 C </line>
</atom-coordinate>
<distance-map>
<line> VAL MET SER ALA ASN ARG ASN LYS MET MET SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 16.84 13.22 12.75 10.96 13.09 11.14 9.52 5.68 5.48 3.84 </line>
<line>MET CA 15.90 12.38 11.40 9.25 11.57 9.26 8.95 5.79 3.80 </line>
<line>MET CA 13.43 9.70 8.08 5.68 8.05 6.46 6.28 3.80 </line>
<line>LYS CA 16.10 12.26 10.29 7.41 8.20 6.17 3.85 </line>
<line>ASN CA 16.83 13.18 10.29 6.88 5.76 3.77 </line>
<line>ARG CA 15.69 12.34 8.95 5.18 3.78 </line>
<line>ASN CA 13.40 10.42 6.71 3.80 </line>
<line>ALA CA 10.51 7.22 3.80 </line>
<line>SER CA 6.80 3.83 </line>
<line>MET CA 3.85 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>SER CA 298</line>
<line>MET CA 330</line>
<line>MET CA 356</line>
<line>LYS CA 264</line>
<line>ASN CA 227</line>
<line>ARG CA 271</line>
<line>ASN CA 321</line>
<line>ALA CA 428</line>
<line>SER CA 499</line>
<line>MET CA 562</line>
<line>VAL CA 550</line>
</n14>
</entryChain>
<parallel>
<x>60.470001220703125</x>
<y>17.393999099731445</y>
<z>-41.540000915527344</z>
</parallel>
<rotation>
<x>-0.640999972820282</x>
<y>0.32199999690055847</y>
<z>0.6970000267028809</z>
<x>0.6909999847412109</x>
<y>0.6370000243186951</y>
<z>0.34200000762939453</z>
<x>-0.33399999141693115</x>
<y>0.7009999752044678</y>
<z>-0.6299999952316284</z>
</rotation>
<rmsd>1.3795469999313354</rmsd>
<dmax>2.9805080890655518</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2JJY</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2JJYC</entryIDChain>
<sequence>TYVGQ-FKDRV</sequence>
<secondary-structure>EE - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4054 CA THR C 38 -51.665 -3.732 21.161 1.00 8.28 C </line>
<line>ATOM 4061 CA TYR C 39 -53.845 -2.678 18.207 1.00 9.77 C </line>
<line>ATOM 4073 CA VAL C 40 -54.300 0.503 16.179 1.00 11.00 C </line>
<line>ATOM 4080 CA GLY C 41 -57.556 1.999 14.916 1.00 12.05 C </line>
<line>ATOM 4084 CA GLN C 42 -60.721 -0.058 14.384 1.00 13.67 C </line>
<line>ATOM 4093 CA PHE C 43 -58.803 -3.308 14.460 1.00 14.09 C </line>
<line>ATOM 4104 CA LYS C 44 -59.845 -4.137 18.060 1.00 14.26 C </line>
<line>ATOM 4113 CA ASP C 45 -62.025 -7.013 16.852 1.00 13.94 C </line>
<line>ATOM 4121 CA ARG C 46 -59.561 -8.534 14.424 1.00 13.23 C </line>
<line>ATOM 4132 CA VAL C 47 -56.681 -8.540 16.981 1.00 11.74 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ARG ASP LYS PHE GLN GLY VAL TYR THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.11 11.44 11.69 8.76 9.80 11.89 10.32 7.05 3.82 </line>
<line>TYR CA 6.63 9.02 9.36 6.18 6.25 8.29 6.82 3.80 </line>
<line>VAL CA 9.39 10.60 10.80 7.47 6.14 6.69 3.80 </line>
<line>GLY CA 10.77 10.73 10.24 7.26 5.47 3.81 </line>
<line>GLN CA 9.75 8.56 7.49 5.56 3.77 </line>
<line>PHE CA 6.18 5.28 5.46 3.84 </line>
<line>LYS CA 5.53 5.71 3.81 </line>
<line>ASP CA 5.56 3.78 </line>
<line>ARG CA 3.85 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 470</line>
<line>TYR CA 378</line>
<line>VAL CA 306</line>
<line>GLY CA 212</line>
<line>GLN CA 158</line>
<line>PHE CA 210</line>
<line>LYS CA 228</line>
<line>ASP CA 187</line>
<line>ARG CA 231</line>
<line>VAL CA 312</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DFI</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1DFID</entryIDChain>
<sequence>TYQNDKLKGRV</sequence>
<secondary-structure>EE HHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 5771 CA THR D 38 33.366 -0.948 -11.079 1.00 23.97 C </line>
<line>ATOM 5778 CA TYR D 39 35.744 -3.776 -10.462 1.00 17.90 C </line>
<line>ATOM 5790 CA GLN D 40 38.476 -4.181 -7.912 1.00 34.99 C </line>
<line>ATOM 5799 CA ASN D 41 41.331 -5.775 -9.902 1.00 60.70 C </line>
<line>ATOM 5807 CA ASP D 42 42.328 -6.745 -13.409 1.00 68.15 C </line>
<line>ATOM 5815 CA LYS D 43 41.469 -10.384 -12.732 1.00 53.99 C </line>
<line>ATOM 5824 CA LEU D 44 37.747 -9.485 -12.418 1.00 38.10 C </line>
<line>ATOM 5832 CA LYS D 45 37.497 -7.240 -15.443 1.00 58.19 C </line>
<line>ATOM 5841 CA GLY D 46 36.486 -9.736 -18.086 1.00 62.19 C </line>
<line>ATOM 5845 CA ARG D 47 33.750 -11.200 -15.955 1.00 51.64 C </line>
<line>ATOM 5856 CA VAL D 48 32.357 -7.849 -14.983 1.00 61.43 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ARG GLY LYS LEU LYS ASP ASN GLN TYR THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 7.99 11.36 11.66 8.70 9.69 12.55 10.92 9.39 6.83 3.75 </line>
<line>TYR CA 6.96 9.45 9.71 6.32 6.36 9.03 7.80 5.96 3.76 </line>
<line>GLN CA 10.04 11.67 11.76 8.19 7.00 8.41 7.19 3.83 </line>
<line>ASN CA 10.52 11.11 10.30 6.90 5.74 5.41 3.77 </line>
<line>ASP CA 10.15 10.00 8.06 5.27 5.43 3.80 </line>
<line>LYS CA 9.72 8.40 7.34 5.75 3.84 </line>
<line>LEU CA 6.19 5.61 5.81 3.78 </line>
<line>LYS CA 5.20 5.48 3.77 </line>
<line>GLY CA 5.50 3.76 </line>
<line>ARG CA 3.76 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 474</line>
<line>TYR CA 398</line>
<line>GLN CA 339</line>
<line>ASN CA 238</line>
<line>ASP CA 178</line>
<line>LYS CA 168</line>
<line>LEU CA 231</line>
<line>LYS CA 245</line>
<line>GLY CA 220</line>
<line>ARG CA 262</line>
<line>VAL CA 341</line>
</n14>
</entryChain>
<parallel>
<x>-95.21700286865234</x>
<y>3.683000087738037</y>
<z>29.115999221801758</z>
</parallel>
<rotation>
<x>-0.5410000085830688</x>
<y>0.8140000104904175</y>
<z>-0.21400000154972076</z>
<x>0.3449999988079071</x>
<y>0.44600000977516174</y>
<z>0.8259999752044678</z>
<x>0.7670000195503235</x>
<y>0.37299999594688416</y>
<z>-0.5220000147819519</z>
</rotation>
<rmsd>0.8086739778518677</rmsd>
<dmax>1.5192639827728271</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2JJY</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2JJYC</entryIDChain>
<sequence>SAGPI-----DYNAM</sequence>
<secondary-structure>E ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 5195 CA SER C 188 -32.705 -9.104 12.291 1.00 6.25 C </line>
<line>ATOM 5201 CA ALA C 189 -35.135 -11.528 10.717 1.00 6.54 C </line>
<line>ATOM 5206 CA GLY C 190 -34.623 -12.910 7.234 1.00 8.20 C </line>
<line>ATOM 5210 CA PRO C 191 -37.545 -12.823 4.904 1.00 10.90 C </line>
<line>ATOM 5217 CA ILE C 192 -39.939 -15.689 5.820 1.00 11.90 C </line>
<line>ATOM 5225 CA ASP C 208 -36.806 -16.091 -3.540 1.00 40.77 C </line>
<line>ATOM 5233 CA TYR C 209 -33.027 -16.622 -3.392 1.00 39.34 C </line>
<line>ATOM 5245 CA ASN C 210 -32.296 -15.920 0.265 1.00 35.32 C </line>
<line>ATOM 5253 CA ALA C 211 -33.164 -19.663 -0.120 1.00 29.48 C </line>
<line>ATOM 5258 CA MET C 212 -30.288 -20.180 -2.563 1.00 21.73 C </line>
</atom-coordinate>
<distance-map>
<line> MET ALA ASN TYR ASP ILE PRO GLY ALA SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 18.69 16.30 13.83 17.39 17.78 11.73 9.58 6.61 3.78 </line>
<line>ALA CA 16.57 13.69 11.69 15.15 15.06 8.02 6.42 3.78 </line>
<line>GLY CA 12.95 10.09 7.94 11.37 11.44 6.16 3.74 </line>
<line>PRO CA 12.75 9.55 7.66 10.18 9.08 3.85 </line>
<line>ILE CA 13.55 9.85 9.45 11.55 9.88 </line>
<line>ASP CA 7.76 6.14 5.90 3.82 </line>
<line>TYR CA 4.57 4.47 3.79 </line>
<line>ASN CA 5.49 3.86 </line>
<line>ALA CA 3.81 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>SER CA 448</line>
<line>ALA CA 426</line>
<line>GLY CA 386</line>
<line>PRO CA 328</line>
<line>ILE CA 292</line>
<line>ASP CA 169</line>
<line>TYR CA 213</line>
<line>ASN CA 268</line>
<line>ALA CA 215</line>
<line>MET CA 200</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DFI</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1DFID</entryIDChain>
<sequence>SAGPIRTLMLAHCEA</sequence>
<secondary-structure>E HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6906 CA SER D 188 20.653 -5.158 6.550 1.00 18.00 C </line>
<line>ATOM 6912 CA ALA D 189 20.349 -8.454 4.716 1.00 8.87 C </line>
<line>ATOM 6917 CA GLY D 190 19.788 -11.864 6.261 1.00 15.76 C </line>
<line>ATOM 6921 CA PRO D 191 22.230 -14.674 5.379 1.00 40.56 C </line>
<line>ATOM 6928 CA ILE D 192 21.698 -15.992 1.860 1.00 52.67 C </line>
<line>ATOM 6936 CA ARG D 193 21.495 -19.686 1.215 1.00 40.38 C </line>
<line>ATOM 6947 CA THR D 194 23.737 -19.738 -1.827 1.00 97.52 C </line>
<line>ATOM 6954 CA LEU D 195 26.198 -17.014 -1.033 1.00 67.78 C </line>
<line>ATOM 6962 CA MET D 206 23.490 -22.222 10.649 1.00 34.63 C </line>
<line>ATOM 6970 CA LEU D 207 20.841 -21.535 8.035 1.00 51.53 C </line>
<line>ATOM 6978 CA ALA D 208 18.674 -24.491 8.814 1.00 45.84 C </line>
<line>ATOM 6983 CA HIS D 209 18.591 -22.580 12.151 1.00100.00 C </line>
<line>ATOM 6993 CA CYS D 210 17.730 -19.383 10.326 1.00 34.10 C </line>
<line>ATOM 6999 CA GLU D 211 15.063 -21.014 8.174 1.00 28.06 C </line>
<line>ATOM 7008 CA ALA D 212 13.542 -22.810 11.146 1.00 56.24 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLU CYS HIS ALA LEU MET LEU THR ARG ILE PRO GLY ALA SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 19.58 16.89 15.01 18.42 19.57 16.45 17.78 15.13 17.10 15.50 11.85 9.72 6.77 3.78 </line>
<line>ALA CA 17.14 14.06 12.56 16.06 16.64 13.50 15.32 11.85 13.48 11.82 8.17 6.53 3.79 </line>
<line>GLY CA 13.52 10.47 8.79 12.29 12.93 9.89 11.84 10.99 11.96 9.46 6.33 3.83 </line>
<line>PRO CA 13.23 9.97 8.18 11.03 10.99 7.49 9.29 7.90 8.94 6.56 3.80 </line>
<line>ILE CA 14.12 10.45 9.95 12.61 11.39 8.34 10.92 5.45 5.64 3.76 </line>
<line>ARG CA 13.10 9.57 9.86 11.68 9.42 7.10 9.97 5.86 3.78 </line>
<line>THR CA 16.78 13.30 13.56 15.16 12.71 10.43 12.72 3.76 </line>
<line>LEU CA 18.50 14.99 14.36 16.21 14.47 11.46 13.07 </line>
<line>MET CA 9.98 8.87 6.43 5.14 5.63 3.78 </line>
<line>LEU CA 8.04 5.80 4.42 4.81 3.75 </line>
<line>ALA CA 5.88 5.05 5.41 3.85 </line>
<line>HIS CA 5.15 5.54 3.78 </line>
<line>CYS CA 5.47 3.80 </line>
<line>GLU CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>SER CA 443</line>
<line>ALA CA 445</line>
<line>GLY CA 411</line>
<line>PRO CA 369</line>
<line>ILE CA 329</line>
<line>ARG CA 239</line>
<line>THR CA 201</line>
<line>LEU CA 234</line>
<line>MET CA 182</line>
<line>LEU CA 224</line>
<line>ALA CA 177</line>
<line>HIS CA 215</line>
<line>CYS CA 278</line>
<line>GLU CA 228</line>
<line>ALA CA 197</line>
</n14>
</entryChain>
<parallel>
<x>-55.2239990234375</x>
<y>1.4889999628067017</y>
<z>-2.7200000286102295</z>
</parallel>
<rotation>
<x>-0.5820000171661377</x>
<y>0.7929999828338623</y>
<z>-0.17800000309944153</z>
<x>0.32499998807907104</x>
<y>0.42800000309944153</y>
<z>0.8429999947547913</z>
<x>0.7450000047683716</x>
<y>0.43299999833106995</y>
<z>-0.5070000290870667</z>
</rotation>
<rmsd>1.0180460214614868</rmsd>
<dmax>2.1046230792999268</dmax>
</indel>