NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DFID-2JJYD
confEVID 1DFID-2JJYD
pdbIDA 1DFI
pdbIDB 2JJY
pdbChainA D
pdbChainB D
identity 0.560000002384186
indelSize 3
alignment <alignment>
<seq1>GFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP-GSALLTLSYLGAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAA--MNE</seq1>
<seq2>GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIK--MLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHCVSMGNVL</seq2>
<ss_1> EEEE HHHHHHHHHHH EEEEEE HHHHHHHHHHHHH EEE HHHHHHHHHHH EEEEEE GGG HHHH HHHHHHHHIIIIHHHHHHHHHHGGG - EEEEEE HHHH HHHHHHHHHHHHHHHHHHHH EEEEEE HHHHHH HHHHHHHHHHH GGG EEE GGG -- </ss_1>
<ss_2> EEEE HHHHHHHHHHH EEEEEE - HHHHHHH GGG EEE HHHHHHHHHHHHHHH EEEE HHHH HHHHHHHHIIIIHHHHHHHHHH HHHH EEEEEEE HHHHHHHHHHHHHHHHHHH EEEEEEE -- HHHHHHH HHHHHHHHHGGG GGG EEE GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DFI</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1DFID</entryIDChain>
<sequence>SMLNP-GSALL</sequence>
<secondary-structure>GG - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 6504 CA SER D 133 29.102 17.462 -7.316 1.00 58.33 C </line>
<line>ATOM 6510 CA MET D 134 28.040 14.885 -10.012 1.00 25.03 C </line>
<line>ATOM 6518 CA LEU D 135 24.944 13.737 -8.168 1.00 23.43 C </line>
<line>ATOM 6526 CA ASN D 136 21.591 14.964 -9.259 1.00 29.07 C </line>
<line>ATOM 6534 CA PRO D 137 18.933 16.199 -6.858 1.00 28.14 C </line>
<line>ATOM 6541 CA GLY D 138 16.891 13.141 -5.928 1.00 18.28 C </line>
<line>ATOM 6545 CA SER D 139 19.960 10.862 -6.084 1.00 14.36 C </line>
<line>ATOM 6551 CA ALA D 140 20.162 7.917 -3.596 1.00 25.31 C </line>
<line>ATOM 6556 CA LEU D 141 23.173 6.095 -2.101 1.00 19.88 C </line>
<line>ATOM 6564 CA LEU D 142 22.857 2.677 -0.672 1.00 19.79 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU ALA SER GLY PRO ASN LEU MET SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 17.37 13.84 13.60 11.34 13.03 10.26 8.15 5.65 3.88 </line>
<line>MET CA 16.22 12.79 12.32 9.84 12.00 9.73 6.49 3.78 </line>
<line>LEU CA 13.52 9.92 8.81 6.12 8.38 6.63 3.73 </line>
<line>ASN CA 15.04 11.51 9.15 5.44 6.04 3.79 </line>
<line>PRO CA 15.38 11.95 8.99 5.49 3.79 </line>
<line>GLY CA 13.14 10.19 6.59 3.83 </line>
<line>SER CA 10.23 6.99 3.86 </line>
<line>ALA CA 6.58 3.82 </line>
<line>LEU CA 3.72 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>SER CA 262</line>
<line>MET CA 312</line>
<line>LEU CA 348</line>
<line>ASN CA 298</line>
<line>PRO CA 254</line>
<line>GLY CA 309</line>
<line>SER CA 424</line>
<line>ALA CA 496</line>
<line>LEU CA 560</line>
<line>LEU CA 546</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2JJY</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2JJYD</entryIDChain>
<sequence>SMMKNRNASMV</sequence>
<secondary-structure>HHHH EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 6689 CA SER D 132 -20.019 -37.649 9.110 1.00 9.96 C </line>
<line>ATOM 6695 CA MET D 133 -21.911 -38.260 12.317 1.00 10.79 C </line>
<line>ATOM 6703 CA MET D 134 -23.654 -34.874 12.354 1.00 12.20 C </line>
<line>ATOM 6711 CA LYS D 135 -25.583 -34.951 9.012 1.00 12.62 C </line>
<line>ATOM 6720 CA ASN D 136 -29.280 -33.934 8.778 1.00 11.09 C </line>
<line>ATOM 6728 CA ARG D 137 -30.310 -33.743 12.386 1.00 9.84 C </line>
<line>ATOM 6739 CA ASN D 138 -30.357 -30.006 12.995 1.00 10.03 C </line>
<line>ATOM 6747 CA ALA D 139 -26.823 -30.508 14.345 1.00 10.05 C </line>
<line>ATOM 6752 CA SER D 140 -25.032 -27.521 15.865 1.00 10.26 C </line>
<line>ATOM 6758 CA MET D 141 -21.467 -26.327 16.512 1.00 9.88 C </line>
<line>ATOM 6766 CA VAL D 142 -20.391 -23.473 18.805 1.00 8.70 C </line>
</atom-coordinate>
<distance-map>
<line> VAL MET SER ALA ASN ARG ASN LYS MET MET SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 17.18 13.60 13.17 11.17 13.43 11.48 9.98 6.18 5.61 3.77 </line>
<line>MET CA 16.22 12.66 11.73 9.40 11.83 9.54 9.25 5.95 3.81 </line>
<line>MET CA 13.50 9.75 8.26 5.75 8.31 6.75 6.73 3.86 </line>
<line>LYS CA 15.96 12.15 10.12 7.05 7.94 5.93 3.84 </line>
<line>ASN CA 17.00 13.37 10.46 6.98 5.86 3.76 </line>
<line>ARG CA 15.65 12.26 8.87 5.14 3.79 </line>
<line>ASN CA 13.26 10.24 6.54 3.82 </line>
<line>ALA CA 10.52 7.13 3.80 </line>
<line>SER CA 6.82 3.81 </line>
<line>MET CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>SER CA 287</line>
<line>MET CA 324</line>
<line>MET CA 356</line>
<line>LYS CA 260</line>
<line>ASN CA 223</line>
<line>ARG CA 271</line>
<line>ASN CA 324</line>
<line>ALA CA 430</line>
<line>SER CA 496</line>
<line>MET CA 566</line>
<line>VAL CA 542</line>
</n14>
</entryChain>
<parallel>
<x>47.78499984741211</x>
<y>47.10900115966797</y>
<z>-19.0</z>
</parallel>
<rotation>
<x>0.921999990940094</x>
<y>-0.10300000011920929</y>
<z>0.3720000088214874</z>
<x>-0.38499999046325684</x>
<y>-0.3330000042915344</y>
<z>0.8610000014305115</z>
<x>0.03500000014901161</x>
<y>-0.9369999766349792</y>
<z>-0.34700000286102295</z>
</rotation>
<rmsd>1.2844820022583008</rmsd>
<dmax>2.7616190910339355</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2JJY</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2JJYD</entryIDChain>
<sequence>TYVGQ-FKDRV</sequence>
<secondary-structure>EE - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 5957 CA THR D 38 -12.216 -34.253 26.174 1.00 8.36 C </line>
<line>ATOM 5964 CA TYR D 39 -9.046 -33.647 28.117 1.00 9.64 C </line>
<line>ATOM 5976 CA VAL D 40 -5.526 -32.709 27.082 1.00 10.54 C </line>
<line>ATOM 5983 CA GLY D 41 -2.299 -34.233 28.362 1.00 11.56 C </line>
<line>ATOM 5987 CA GLN D 42 -2.074 -35.380 32.002 1.00 13.09 C </line>
<line>ATOM 5996 CA PHE D 43 -5.472 -34.127 33.087 1.00 14.26 C </line>
<line>ATOM 6007 CA LYS D 44 -7.300 -37.436 32.559 1.00 14.14 C </line>
<line>ATOM 6016 CA ASP D 45 -7.699 -37.499 36.324 1.00 14.25 C </line>
<line>ATOM 6024 CA ARG D 46 -8.738 -33.840 36.892 1.00 14.23 C </line>
<line>ATOM 6035 CA VAL D 47 -11.624 -33.817 34.387 1.00 11.77 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ARG ASP LYS PHE GLN GLY VAL TYR THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 8.25 11.28 11.57 8.66 9.66 11.75 10.16 6.93 3.77 </line>
<line>TYR CA 6.78 8.78 9.17 6.09 6.14 8.17 6.78 3.79 </line>
<line>VAL CA 9.58 10.38 10.63 7.45 6.17 6.58 3.79 </line>
<line>GLY CA 11.11 10.69 10.16 7.27 5.69 3.82 </line>
<line>GLN CA 9.97 8.41 7.40 5.64 3.78 </line>
<line>PHE CA 6.30 5.02 5.18 3.82 </line>
<line>LYS CA 5.93 5.81 3.79 </line>
<line>ASP CA 5.72 3.85 </line>
<line>ARG CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 467</line>
<line>TYR CA 383</line>
<line>VAL CA 318</line>
<line>GLY CA 216</line>
<line>GLN CA 166</line>
<line>PHE CA 210</line>
<line>LYS CA 230</line>
<line>ASP CA 189</line>
<line>ARG CA 230</line>
<line>VAL CA 314</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DFI</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1DFID</entryIDChain>
<sequence>TYQNDKLKGRV</sequence>
<secondary-structure>EE HHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 5771 CA THR D 38 33.366 -0.948 -11.079 1.00 23.97 C </line>
<line>ATOM 5778 CA TYR D 39 35.744 -3.776 -10.462 1.00 17.90 C </line>
<line>ATOM 5790 CA GLN D 40 38.476 -4.181 -7.912 1.00 34.99 C </line>
<line>ATOM 5799 CA ASN D 41 41.331 -5.775 -9.902 1.00 60.70 C </line>
<line>ATOM 5807 CA ASP D 42 42.328 -6.745 -13.409 1.00 68.15 C </line>
<line>ATOM 5815 CA LYS D 43 41.469 -10.384 -12.732 1.00 53.99 C </line>
<line>ATOM 5824 CA LEU D 44 37.747 -9.485 -12.418 1.00 38.10 C </line>
<line>ATOM 5832 CA LYS D 45 37.497 -7.240 -15.443 1.00 58.19 C </line>
<line>ATOM 5841 CA GLY D 46 36.486 -9.736 -18.086 1.00 62.19 C </line>
<line>ATOM 5845 CA ARG D 47 33.750 -11.200 -15.955 1.00 51.64 C </line>
<line>ATOM 5856 CA VAL D 48 32.357 -7.849 -14.983 1.00 61.43 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ARG GLY LYS LEU LYS ASP ASN GLN TYR THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 7.99 11.36 11.66 8.70 9.69 12.55 10.92 9.39 6.83 3.75 </line>
<line>TYR CA 6.96 9.45 9.71 6.32 6.36 9.03 7.80 5.96 3.76 </line>
<line>GLN CA 10.04 11.67 11.76 8.19 7.00 8.41 7.19 3.83 </line>
<line>ASN CA 10.52 11.11 10.30 6.90 5.74 5.41 3.77 </line>
<line>ASP CA 10.15 10.00 8.06 5.27 5.43 3.80 </line>
<line>LYS CA 9.72 8.40 7.34 5.75 3.84 </line>
<line>LEU CA 6.19 5.61 5.81 3.78 </line>
<line>LYS CA 5.20 5.48 3.77 </line>
<line>GLY CA 5.50 3.76 </line>
<line>ARG CA 3.76 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 474</line>
<line>TYR CA 398</line>
<line>GLN CA 339</line>
<line>ASN CA 238</line>
<line>ASP CA 178</line>
<line>LYS CA 168</line>
<line>LEU CA 231</line>
<line>LYS CA 245</line>
<line>GLY CA 220</line>
<line>ARG CA 262</line>
<line>VAL CA 341</line>
</n14>
</entryChain>
<parallel>
<x>-44.32600021362305</x>
<y>-28.924999237060547</y>
<z>42.801998138427734</z>
</parallel>
<rotation>
<x>0.9520000219345093</x>
<y>-0.2720000147819519</y>
<z>-0.13699999451637268</z>
<x>-0.24799999594688416</x>
<y>-0.4300000071525574</y>
<z>-0.8679999709129333</z>
<x>0.17800000309944153</x>
<y>0.8610000014305115</y>
<z>-0.47699999809265137</z>
</rotation>
<rmsd>0.8695060014724731</rmsd>
<dmax>1.6655160188674927</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2JJY</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2JJYD</entryIDChain>
<sequence>AGPIK--MLDYN</sequence>
<secondary-structure>E -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 7104 CA ALA D 189 -17.869 -13.828 26.319 1.00 6.89 C </line>
<line>ATOM 7109 CA GLY D 190 -16.737 -10.984 28.494 1.00 7.62 C </line>
<line>ATOM 7113 CA PRO D 191 -14.054 -11.576 31.095 1.00 8.53 C </line>
<line>ATOM 7120 CA ILE D 192 -15.165 -13.803 34.029 1.00 10.11 C </line>
<line>ATOM 7128 CA LYS D 205 -7.688 -8.184 35.938 1.00 20.82 C </line>
<line>ATOM 7137 CA MET D 206 -9.498 -5.719 33.627 1.00 20.91 C </line>
<line>ATOM 7145 CA LEU D 207 -13.033 -6.925 34.075 1.00 18.92 C </line>
<line>ATOM 7153 CA ASP D 208 -13.285 -3.871 36.301 1.00 17.15 C </line>
<line>ATOM 7161 CA TYR D 209 -13.351 -1.642 33.212 1.00 16.27 C </line>
<line>ATOM 7173 CA ASN D 210 -16.015 -3.885 31.753 1.00 17.08 C </line>
</atom-coordinate>
<distance-map>
<line> ASN TYR ASP LEU MET LYS ILE PRO GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 11.48 14.71 14.83 11.45 13.76 15.10 8.17 6.51 3.76 </line>
<line>GLY CA 7.84 11.00 11.11 7.83 10.32 12.05 6.41 3.78 </line>
<line>PRO CA 7.96 10.18 9.33 5.62 7.84 8.69 3.85 </line>
<line>ILE CA 10.21 12.32 10.36 7.20 9.88 9.55 </line>
<line>LYS CA 10.26 9.07 7.08 5.80 3.83 </line>
<line>MET CA 7.02 5.62 4.99 3.76 </line>
<line>LEU CA 4.85 5.36 3.79 </line>
<line>ASP CA 5.30 3.81 </line>
<line>TYR CA 3.78 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ALA CA 427</line>
<line>GLY CA 404</line>
<line>PRO CA 356</line>
<line>ILE CA 303</line>
<line>LYS CA 156</line>
<line>MET CA 221</line>
<line>LEU CA 256</line>
<line>ASP CA 210</line>
<line>TYR CA 251</line>
<line>ASN CA 300</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DFI</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1DFID</entryIDChain>
<sequence>AGPIRTLMLAHC</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6912 CA ALA D 189 20.349 -8.454 4.716 1.00 8.87 C </line>
<line>ATOM 6917 CA GLY D 190 19.788 -11.864 6.261 1.00 15.76 C </line>
<line>ATOM 6921 CA PRO D 191 22.230 -14.674 5.379 1.00 40.56 C </line>
<line>ATOM 6928 CA ILE D 192 21.698 -15.992 1.860 1.00 52.67 C </line>
<line>ATOM 6936 CA ARG D 193 21.495 -19.686 1.215 1.00 40.38 C </line>
<line>ATOM 6947 CA THR D 194 23.737 -19.738 -1.827 1.00 97.52 C </line>
<line>ATOM 6954 CA LEU D 195 26.198 -17.014 -1.033 1.00 67.78 C </line>
<line>ATOM 6962 CA MET D 206 23.490 -22.222 10.649 1.00 34.63 C </line>
<line>ATOM 6970 CA LEU D 207 20.841 -21.535 8.035 1.00 51.53 C </line>
<line>ATOM 6978 CA ALA D 208 18.674 -24.491 8.814 1.00 45.84 C </line>
<line>ATOM 6983 CA HIS D 209 18.591 -22.580 12.151 1.00100.00 C </line>
<line>ATOM 6993 CA CYS D 210 17.730 -19.383 10.326 1.00 34.10 C </line>
</atom-coordinate>
<distance-map>
<line> CYS HIS ALA LEU MET LEU THR ARG ILE PRO GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.56 16.06 16.64 13.50 15.32 11.85 13.48 11.82 8.17 6.53 3.79 </line>
<line>GLY CA 8.79 12.29 12.93 9.89 11.84 10.99 11.96 9.46 6.33 3.83 </line>
<line>PRO CA 8.18 11.03 10.99 7.49 9.29 7.90 8.94 6.56 3.80 </line>
<line>ILE CA 9.95 12.61 11.39 8.34 10.92 5.45 5.64 3.76 </line>
<line>ARG CA 9.86 11.68 9.42 7.10 9.97 5.86 3.78 </line>
<line>THR CA 13.56 15.16 12.71 10.43 12.72 3.76 </line>
<line>LEU CA 14.36 16.21 14.47 11.46 13.07 </line>
<line>MET CA 6.43 5.14 5.63 3.78 </line>
<line>LEU CA 4.42 4.81 3.75 </line>
<line>ALA CA 5.41 3.85 </line>
<line>HIS CA 3.78 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>ALA CA 445</line>
<line>GLY CA 411</line>
<line>PRO CA 369</line>
<line>ILE CA 329</line>
<line>ARG CA 239</line>
<line>THR CA 201</line>
<line>LEU CA 234</line>
<line>MET CA 182</line>
<line>LEU CA 224</line>
<line>ALA CA 177</line>
<line>HIS CA 215</line>
<line>CYS CA 278</line>
</n14>
</entryChain>
<parallel>
<x>-34.48699951171875</x>
<y>8.003000259399414</y>
<z>26.618999481201172</z>
</parallel>
<rotation>
<x>0.8820000290870667</x>
<y>-0.1679999977350235</y>
<z>-0.4399999976158142</z>
<x>-0.45899999141693115</x>
<y>-0.5090000033378601</y>
<z>-0.7279999852180481</z>
<x>-0.10199999809265137</x>
<y>0.843999981880188</y>
<z>-0.5270000100135803</z>
</rotation>
<rmsd>2.5525929927825928</rmsd>
<dmax>5.543083190917969</dmax>
</indel>