NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DI3A-2G4NF
confEVID 1DI3A-2G4NF
pdbIDA 1DI3
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDGSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNN--DSTEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSEK-LDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE -- EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH -GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>IVQNN--DSTEY</sequence>
<secondary-structure>EEEE -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5205 CA ILE F 41 55.377 19.946 112.685 1.00 37.59 C </line>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 5.02 5.70 6.93 10.62 13.74 12.71 10.28 6.68 3.81 </line>
<line>VAL CA 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 13.91 10.63 7.33 3.85 </line>
<line>SER CA 10.15 6.88 3.81 </line>
<line>THR CA 6.66 3.78 </line>
<line>GLU CA 3.77 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 296</line>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DI3</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DI3A</entryIDChain>
<sequence>TNYNAGDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 343 CA THR A 43 3.708 9.111 24.993 1.00 9.13 C </line>
<line>ATOM 350 CA ASN A 44 5.085 5.621 24.745 1.00 10.51 C </line>
<line>ATOM 358 CA TYR A 45 3.830 2.578 26.589 1.00 10.91 C </line>
<line>ATOM 370 CA ASN A 46 6.256 -0.205 27.591 1.00 13.29 C </line>
<line>ATOM 378 CA ALA A 47 4.125 -3.300 28.199 1.00 12.76 C </line>
<line>ATOM 383 CA GLY A 48 7.106 -5.060 29.791 1.00 13.19 C </line>
<line>ATOM 387 CA ASP A 49 7.272 -3.085 33.021 1.00 9.88 C </line>
<line>ATOM 395 CA GLY A 50 3.992 -1.208 32.766 1.00 8.40 C </line>
<line>ATOM 399 CA SER A 51 5.750 2.155 32.533 1.00 8.32 C </line>
<line>ATOM 405 CA THR A 52 5.127 5.041 30.131 1.00 8.73 C </line>
<line>ATOM 412 CA ASP A 53 7.454 7.716 28.717 1.00 9.28 C </line>
<line>ATOM 420 CA TYR A 54 5.857 11.192 28.858 1.00 6.50 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP GLY ALA ASN TYR ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.89 5.46 6.71 10.46 12.92 15.03 15.34 12.83 10.00 6.73 3.76 </line>
<line>ASN CA 6.97 5.08 5.42 8.55 10.59 12.21 11.98 9.61 6.59 3.77 </line>
<line>TYR CA 9.14 6.64 4.50 6.26 7.25 9.24 8.91 6.10 3.83 </line>
<line>ASN CA 11.47 8.09 5.94 5.50 5.74 6.23 5.40 3.81 </line>
<line>ALA CA 14.61 11.52 8.62 7.15 5.03 5.76 3.81 </line>
<line>GLY CA 16.33 12.83 10.30 7.84 5.78 3.79 </line>
<line>ASP CA 14.94 11.63 8.89 5.48 3.79 </line>
<line>GLY CA 13.13 10.39 6.88 3.80 </line>
<line>SER CA 9.76 6.96 3.81 </line>
<line>THR CA 6.32 3.82 </line>
<line>ASP CA 3.83 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 292</line>
<line>ASN CA 259</line>
<line>TYR CA 217</line>
<line>ASN CA 188</line>
<line>ALA CA 137</line>
<line>GLY CA 129</line>
<line>ASP CA 172</line>
<line>GLY CA 196</line>
<line>SER CA 257</line>
<line>THR CA 315</line>
<line>ASP CA 411</line>
<line>TYR CA 430</line>
</n14>
</entryChain>
<parallel>
<x>54.14500045776367</x>
<y>13.020999908447266</y>
<z>89.55899810791016</z>
</parallel>
<rotation>
<x>-0.3840000033378601</x>
<y>0.4269999861717224</y>
<z>0.8190000057220459</z>
<x>-0.8130000233650208</x>
<y>0.2630000114440918</y>
<z>-0.5189999938011169</z>
<x>-0.43700000643730164</x>
<y>-0.8650000095367432</y>
<z>0.2460000067949295</z>
</rotation>
<rmsd>0.6655399799346924</rmsd>
<dmax>1.2087219953536987</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DI3</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DI3A</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HHH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 747 CA ARG A 98 16.347 16.598 38.081 1.00 6.88 C </line>
<line>ATOM 758 CA VAL A 99 17.135 13.659 35.750 1.00 6.96 C </line>
<line>ATOM 765 CA VAL A 100 20.571 15.020 34.802 1.00 8.24 C </line>
<line>ATOM 772 CA ARG A 101 21.439 15.605 38.472 1.00 12.31 C </line>
<line>ATOM 783 CA ASP A 102 21.794 11.799 38.662 1.00 18.00 C </line>
<line>ATOM 791 CA PRO A 103 25.146 10.005 37.961 1.00 19.65 C </line>
<line>ATOM 798 CA GLN A 104 24.700 9.549 34.189 1.00 13.07 C </line>
<line>ATOM 807 CA GLY A 105 23.740 13.113 33.343 1.00 11.30 C </line>
<line>ATOM 811 CA ILE A 106 22.523 13.524 29.736 1.00 11.59 C </line>
<line>ATOM 819 CA ARG A 107 23.525 9.895 29.086 1.00 12.15 C </line>
<line>ATOM 830 CA ALA A 108 20.399 8.889 30.994 1.00 12.04 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.23 13.32 10.83 9.45 11.60 11.00 7.28 5.20 5.58 3.83 </line>
<line>VAL CA 7.49 9.97 8.08 7.05 8.75 9.08 5.80 5.45 3.82 </line>
<line>VAL CA 7.22 8.23 5.63 3.98 6.88 7.49 5.17 3.82 </line>
<line>ARG CA 10.10 11.18 9.05 6.15 8.10 6.74 3.83 </line>
<line>ASP CA 8.32 9.92 9.12 5.81 5.79 3.87 </line>
<line>PRO CA 8.50 9.02 9.32 5.74 3.83 </line>
<line>GLN CA 5.40 5.25 6.35 3.79 </line>
<line>GLY CA 5.88 5.34 3.83 </line>
<line>ILE CA 5.25 3.82 </line>
<line>ARG CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 331</line>
<line>VAL CA 386</line>
<line>VAL CA 340</line>
<line>ARG CA 238</line>
<line>ASP CA 229</line>
<line>PRO CA 174</line>
<line>GLN CA 223</line>
<line>GLY CA 296</line>
<line>ILE CA 385</line>
<line>ARG CA 314</line>
<line>ALA CA 339</line>
</n14>
</entryChain>
<parallel>
<x>19.400999069213867</x>
<y>3.0280001163482666</y>
<z>91.64600372314453</z>
</parallel>
<rotation>
<x>-0.23199999332427979</x>
<y>0.24799999594688416</y>
<z>0.9409999847412109</z>
<x>-0.8460000157356262</x>
<y>0.42500001192092896</y>
<z>-0.32100000977516174</z>
<x>-0.4790000021457672</x>
<y>-0.8709999918937683</y>
<z>0.11100000143051147</z>
</rotation>
<rmsd>1.047935962677002</rmsd>
<dmax>2.3465468883514404</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>LCSEK-LDQWL</sequence>
<secondary-structure> -GGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
<line>ATOM 5839 CA LEU F 119 39.177 39.086 118.690 1.00 43.75 C </line>
</atom-coordinate>
<distance-map>
<line> LEU TRP GLN ASP LEU LYS GLU SER CYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.93 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 12.41 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 14.01 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 13.07 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 10.75 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 7.42 5.66 5.44 3.81 </line>
<line>ASP CA 5.57 5.39 3.86 </line>
<line>GLN CA 5.66 3.83 </line>
<line>TRP CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
<line>LEU CA 252</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DI3</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DI3A</entryIDChain>
<sequence>RCQNRDVRQYV</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 894 CA ARG A 115 21.796 10.492 17.872 1.00 10.97 C </line>
<line>ATOM 905 CA CYS A 116 23.608 13.276 19.732 1.00 11.73 C </line>
<line>ATOM 911 CA GLN A 117 26.762 12.051 21.497 1.00 19.87 C </line>
<line>ATOM 920 CA ASN A 118 30.055 12.564 19.631 1.00 30.47 C </line>
<line>ATOM 928 CA ARG A 119 28.428 14.637 16.899 1.00 31.24 C </line>
<line>ATOM 939 CA ASP A 120 28.213 18.316 16.088 1.00 28.71 C </line>
<line>ATOM 947 CA VAL A 121 24.667 19.247 17.179 1.00 19.52 C </line>
<line>ATOM 954 CA ARG A 122 25.099 23.011 16.611 1.00 19.53 C </line>
<line>ATOM 965 CA GLN A 123 22.710 22.671 13.672 1.00 17.19 C </line>
<line>ATOM 974 CA TYR A 124 19.813 22.419 16.143 1.00 13.64 C </line>
<line>ATOM 986 CA VAL A 125 20.357 25.985 17.414 1.00 11.04 C </line>
</atom-coordinate>
<distance-map>
<line> VAL TYR GLN ARG VAL ASP ARG ASN GLN CYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 15.57 12.21 12.92 13.01 9.24 10.27 7.88 8.69 6.34 3.81 </line>
<line>CYS CA 13.32 10.53 11.22 10.33 6.58 7.74 5.75 6.49 3.82 </line>
<line>GLN CA 15.87 13.58 13.80 12.11 8.65 8.40 5.53 3.82 </line>
<line>ASN CA 16.71 14.64 13.84 11.95 8.93 7.00 3.80 </line>
<line>ARG CA 13.93 11.63 10.38 9.02 5.96 3.77 </line>
<line>ASP CA 11.06 9.35 7.42 5.66 3.83 </line>
<line>VAL CA 8.00 5.89 5.28 3.83 </line>
<line>ARG CA 5.65 5.34 3.80 </line>
<line>GLN CA 5.52 3.82 </line>
<line>TYR CA 3.82 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ARG CA 264</line>
<line>CYS CA 309</line>
<line>GLN CA 275</line>
<line>ASN CA 191</line>
<line>ARG CA 210</line>
<line>ASP CA 202</line>
<line>VAL CA 291</line>
<line>ARG CA 250</line>
<line>GLN CA 234</line>
<line>TYR CA 337</line>
<line>VAL CA 295</line>
</n14>
</entryChain>
<parallel>
<x>18.642000198364258</x>
<y>20.895999908447266</y>
<z>108.96900177001953</z>
</parallel>
<rotation>
<x>-0.3580000102519989</x>
<y>0.4320000112056732</y>
<z>0.8270000219345093</z>
<x>-0.7049999833106995</x>
<y>0.4560000002384186</y>
<z>-0.5429999828338623</z>
<x>-0.6119999885559082</x>
<y>-0.777999997138977</y>
<z>0.1420000046491623</z>
</rotation>
<rmsd>1.52577805519104</rmsd>
<dmax>2.383867025375366</dmax>
</indel>