NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DGDA-2CY8A
confEVID 1DGDA-2CY8A
pdbIDA 1DGD
pdbIDB 2CY8
pdbChainA A
pdbChainB A
identity 0.181400001049042
indelSize 3
alignment <alignment>
<seq1>LNDDATFWR-----------NARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK-LDHLFSGMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKE-----------PADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL----------</seq1>
<seq2>--SILNDYKRKTEGSVFWAQRARSVMPDGAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAA---SHPLEVRWAERIVAAF-PSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEG--------TTAN---------------TLLIRPDD--------------IEGMREVFANHGSD----IAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSR------GSFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGV--DIG----GRGSVF--LSAQHEREHVEHLVTTFDRVLDRLADENLLSWQGT</seq2>
<ss_1> HHHHH-----------HHHHH EEEEEEEEE EEEEE HHHHHHHHHHHHH- HHHHHHHHHHHHH EEEEE HHHHHHHHHHHHHHHH EEEE HHHHH EEE EEE EEEHHHHHHHHHHHHHHH EEEE HHHHHHHHHHH EEEE EEEEE HHHH EEEEEEHHHHHHHHH HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHH EEEEE EEEEEE ----------- HHHHHHHHHHH EEE EEEEE HHHHHHHHHHHHHHHHH ----------</ss_1>
<ss_2>-- HHHHHHH HHHHHHHHHHH EEEEEEEEE EEEE HHHHHHHHH --- HHHHHHHHHHHHH - EEEEE HHHHHHHHHHHHHHHH EEE -------- --------------- EEE --------------HHHHHHHHHHHGGG---- EEEE EEE HHHHHHHHHHHHH EEEE - HHHHH EEEEEEE EEEEEEEHHHGGG ------ HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHH EEEEEEEEEEEEEE HHHH HHHHHHHHHHHHH --EEE---- EEE -- HHHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DGD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DGDA</entryIDChain>
<sequence>EYAGK-LDHLF</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 526 CA GLU A 70 14.506 24.373 7.722 1.00 25.81 C </line>
<line>ATOM 535 CA TYR A 71 17.512 26.584 7.402 1.00 26.64 C </line>
<line>ATOM 547 CA ALA A 72 19.369 25.964 10.594 1.00 25.66 C </line>
<line>ATOM 552 CA GLY A 73 19.865 22.359 9.525 1.00 26.51 C </line>
<line>ATOM 556 CA LYS A 74 20.487 23.029 5.833 1.00 25.79 C </line>
<line>ATOM 565 CA LEU A 75 22.327 26.334 5.173 1.00 22.61 C </line>
<line>ATOM 573 CA ASP A 76 23.617 28.481 7.984 1.00 24.19 C </line>
<line>ATOM 581 CA HIS A 77 26.566 30.694 7.587 1.00 20.29 C </line>
<line>ATOM 591 CA LEU A 78 28.939 31.122 4.648 1.00 20.67 C </line>
<line>ATOM 599 CA PHE A 79 32.061 32.834 3.529 1.00 22.15 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LEU HIS ASP LEU LYS GLY ALA TYR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 19.93 16.23 13.62 10.00 8.46 6.41 6.00 5.87 3.75 </line>
<line>TYR CA 16.30 12.60 9.94 6.42 5.31 4.89 5.28 3.74 </line>
<line>ALA CA 16.07 12.39 9.12 5.59 6.19 5.70 3.79 </line>
<line>GLY CA 17.16 13.52 10.87 7.34 6.39 3.80 </line>
<line>LYS CA 15.34 11.76 9.94 6.64 3.84 </line>
<line>LEU CA 11.82 8.18 6.54 3.77 </line>
<line>ASP CA 10.49 6.81 3.71 </line>
<line>HIS CA 7.16 3.80 </line>
<line>LEU CA 3.73 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>GLU CA 195</line>
<line>TYR CA 238</line>
<line>ALA CA 197</line>
<line>GLY CA 145</line>
<line>LYS CA 171</line>
<line>LEU CA 223</line>
<line>ASP CA 256</line>
<line>HIS CA 262</line>
<line>LEU CA 226</line>
<line>PHE CA 173</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2CY8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2CY8A</entryIDChain>
<sequence>EALSHGVQYAA</sequence>
<secondary-structure>HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 583 CA GLU A 84 39.671 0.277 56.664 1.00 39.31 C </line>
<line>ATOM 592 CA ALA A 85 36.254 -1.388 56.861 1.00 36.84 C </line>
<line>ATOM 597 CA LEU A 86 36.542 -3.290 53.638 1.00 40.64 C </line>
<line>ATOM 605 CA SER A 87 39.879 -4.871 54.738 1.00 45.38 C </line>
<line>ATOM 611 CA HIS A 88 37.871 -6.583 57.580 1.00 47.81 C </line>
<line>ATOM 621 CA GLY A 89 35.786 -8.324 54.937 1.00 46.89 C </line>
<line>ATOM 625 CA VAL A 90 32.321 -7.956 56.596 1.00 51.46 C </line>
<line>ATOM 632 CA GLN A 91 29.958 -6.629 54.052 1.00 62.28 C </line>
<line>ATOM 641 CA TYR A 92 26.644 -7.908 55.420 1.00 71.58 C </line>
<line>ATOM 653 CA ALA A 93 26.813 -7.752 59.363 1.00 74.63 C </line>
<line>ATOM 658 CA ALA A 94 24.556 -9.503 61.993 1.00 69.62 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ALA TYR GLN VAL GLY HIS SER LEU ALA GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 18.78 15.40 15.44 12.20 11.04 9.59 7.15 5.50 5.63 3.81 </line>
<line>ALA CA 15.13 11.66 11.70 8.66 7.66 7.21 5.49 5.46 3.75 </line>
<line>LEU CA 15.88 12.14 11.07 7.39 6.95 5.25 5.31 3.85 </line>
<line>SER CA 17.58 14.16 13.60 10.10 8.37 5.36 3.88 </line>
<line>HIS CA 14.33 11.26 11.51 8.66 5.80 3.79 </line>
<line>GLY CA 13.32 10.02 9.16 6.13 3.86 </line>
<line>VAL CA 9.58 6.17 5.80 3.72 </line>
<line>GLN CA 10.03 6.27 3.81 </line>
<line>TYR CA 7.08 3.95 </line>
<line>ALA CA 3.88 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLU CA 201</line>
<line>ALA CA 257</line>
<line>LEU CA 195</line>
<line>SER CA 137</line>
<line>HIS CA 172</line>
<line>GLY CA 162</line>
<line>VAL CA 200</line>
<line>GLN CA 233</line>
<line>TYR CA 219</line>
<line>ALA CA 224</line>
<line>ALA CA 172</line>
</n14>
</entryChain>
<parallel>
<x>-14.361000061035156</x>
<y>30.770999908447266</y>
<z>-47.965999603271484</z>
</parallel>
<rotation>
<x>-0.46700000762939453</x>
<y>-0.878000020980835</y>
<z>0.10300000011920929</z>
<x>-0.8519999980926514</x>
<y>0.4779999852180481</y>
<z>0.21400000154972076</z>
<x>-0.23800000548362732</x>
<y>0.012000000104308128</y>
<z>-0.9710000157356262</z>
</rotation>
<rmsd>1.3598099946975708</rmsd>
<dmax>2.0618700981140137</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2CY8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2CY8A</entryIDChain>
<sequence>VQYAA---SHPLE</sequence>
<secondary-structure> --- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 625 CA VAL A 90 32.321 -7.956 56.596 1.00 51.46 C </line>
<line>ATOM 632 CA GLN A 91 29.958 -6.629 54.052 1.00 62.28 C </line>
<line>ATOM 641 CA TYR A 92 26.644 -7.908 55.420 1.00 71.58 C </line>
<line>ATOM 653 CA ALA A 93 26.813 -7.752 59.363 1.00 74.63 C </line>
<line>ATOM 658 CA ALA A 94 24.556 -9.503 61.993 1.00 69.62 C </line>
<line>ATOM 663 CA SER A 95 25.639 -6.990 64.461 1.00 48.72 C </line>
<line>ATOM 669 CA HIS A 96 28.786 -4.992 64.034 1.00 37.33 C </line>
<line>ATOM 679 CA PRO A 97 30.324 -2.381 66.445 1.00 31.83 C </line>
<line>ATOM 686 CA LEU A 98 30.449 0.294 63.601 1.00 30.32 C </line>
<line>ATOM 694 CA GLU A 99 26.794 -0.029 62.984 1.00 30.05 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LEU PRO HIS SER ALA ALA TYR GLN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.58 10.98 11.49 8.75 10.37 9.58 6.17 5.80 3.72 </line>
<line>GLN CA 11.55 11.80 13.11 10.18 11.28 10.03 6.27 3.81 </line>
<line>TYR CA 10.92 12.19 12.87 9.34 9.14 7.08 3.95 </line>
<line>ALA CA 8.53 9.79 9.56 5.77 5.29 3.88 </line>
<line>ALA CA 9.79 11.55 10.19 6.51 3.68 </line>
<line>SER CA 7.21 8.77 6.87 3.75 </line>
<line>HIS CA 5.45 5.56 3.87 </line>
<line>PRO CA 5.47 3.91 </line>
<line>LEU CA 3.72 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>VAL CA 200</line>
<line>GLN CA 233</line>
<line>TYR CA 219</line>
<line>ALA CA 224</line>
<line>ALA CA 172</line>
<line>SER CA 216</line>
<line>HIS CA 244</line>
<line>PRO CA 243</line>
<line>LEU CA 338</line>
<line>GLU CA 370</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DGD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DGDA</entryIDChain>
<sequence>LDHLFSGMLSRPV</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 565 CA LEU A 75 22.327 26.334 5.173 1.00 22.61 C </line>
<line>ATOM 573 CA ASP A 76 23.617 28.481 7.984 1.00 24.19 C </line>
<line>ATOM 581 CA HIS A 77 26.566 30.694 7.587 1.00 20.29 C </line>
<line>ATOM 591 CA LEU A 78 28.939 31.122 4.648 1.00 20.67 C </line>
<line>ATOM 599 CA PHE A 79 32.061 32.834 3.529 1.00 22.15 C </line>
<line>ATOM 610 CA SER A 80 31.144 36.395 2.368 1.00 24.53 C </line>
<line>ATOM 616 CA GLY A 81 31.906 35.680 -1.270 1.00 27.04 C </line>
<line>ATOM 620 CA MET A 82 29.525 32.770 -1.574 1.00 21.88 C </line>
<line>ATOM 628 CA LEU A 83 26.000 33.421 -2.776 1.00 23.03 C </line>
<line>ATOM 636 CA SER A 84 22.912 31.386 -1.992 1.00 22.75 C </line>
<line>ATOM 642 CA ARG A 85 19.318 31.494 -2.881 1.00 23.46 C </line>
<line>ATOM 653 CA PRO A 86 17.837 33.212 0.146 1.00 20.48 C </line>
<line>ATOM 660 CA VAL A 87 20.202 36.166 -0.182 1.00 24.40 C </line>
</atom-coordinate>
<distance-map>
<line> VAL PRO ARG SER LEU MET GLY SER PHE LEU HIS ASP LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 11.40 9.63 10.03 8.79 11.27 11.78 14.85 13.67 11.82 8.18 6.54 3.77 </line>
<line>ASP CA 11.72 10.83 12.07 10.41 12.08 12.03 14.36 12.28 10.49 6.81 3.71 </line>
<line>HIS CA 11.44 11.74 12.76 10.28 10.73 9.85 11.48 8.98 7.16 3.80 </line>
<line>LEU CA 11.19 12.16 12.22 8.97 8.31 6.46 8.04 6.15 3.73 </line>
<line>PHE CA 12.87 14.63 14.33 10.78 8.77 5.70 5.58 3.86 </line>
<line>SER CA 11.24 13.86 13.84 10.58 7.86 5.59 3.79 </line>
<line>GLY CA 11.76 14.35 13.36 9.99 6.50 3.77 </line>
<line>MET CA 10.02 11.82 10.37 6.77 3.78 </line>
<line>LEU CA 6.92 8.67 6.96 3.78 </line>
<line>SER CA 5.79 5.80 3.70 </line>
<line>ARG CA 5.47 3.78 </line>
<line>PRO CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LEU CA 223</line>
<line>ASP CA 256</line>
<line>HIS CA 262</line>
<line>LEU CA 226</line>
<line>PHE CA 173</line>
<line>SER CA 232</line>
<line>GLY CA 187</line>
<line>MET CA 192</line>
<line>LEU CA 229</line>
<line>SER CA 246</line>
<line>ARG CA 259</line>
<line>PRO CA 350</line>
<line>VAL CA 363</line>
</n14>
</entryChain>
<parallel>
<x>2.9130001068115234</x>
<y>-37.48500061035156</y>
<z>57.63600158691406</z>
</parallel>
<rotation>
<x>-0.5630000233650208</x>
<y>-0.824999988079071</y>
<z>0.04899999871850014</z>
<x>-0.8159999847412109</x>
<y>0.5649999976158142</y>
<z>0.12600000202655792</z>
<x>-0.13099999725818634</x>
<y>0.03099999949336052</y>
<z>-0.9909999966621399</z>
</rotation>
<rmsd>1.8494000434875488</rmsd>
<dmax>3.3415069580078125</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2CY8</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2CY8A</entryIDChain>
<sequence>NHGSD----IAAFI</sequence>
<secondary-structure>HHGGG---- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1253 CA ASN A 197 -13.283 14.961 58.139 1.00 59.53 C </line>
<line>ATOM 1261 CA HIS A 198 -11.051 11.707 58.284 1.00 59.81 C </line>
<line>ATOM 1271 CA GLY A 199 -8.924 12.554 61.277 1.00 58.07 C </line>
<line>ATOM 1275 CA SER A 200 -9.777 9.650 63.530 1.00 58.59 C </line>
<line>ATOM 1281 CA ASP A 201 -8.691 7.228 60.640 1.00 55.98 C </line>
<line>ATOM 1289 CA ILE A 202 -5.236 8.826 59.923 1.00 47.42 C </line>
<line>ATOM 1297 CA ALA A 203 -2.257 6.758 61.003 1.00 44.07 C </line>
<line>ATOM 1302 CA ALA A 204 0.262 9.391 59.914 1.00 41.60 C </line>
<line>ATOM 1307 CA PHE A 205 0.961 12.723 58.339 1.00 35.62 C </line>
<line>ATOM 1318 CA ILE A 206 4.193 12.393 56.403 1.00 36.96 C </line>
</atom-coordinate>
<distance-map>
<line> ILE PHE ALA ALA ILE ASP SER GLY HIS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 17.75 14.42 14.75 14.04 10.27 9.33 8.34 5.89 3.95 </line>
<line>HIS CA 15.37 12.06 11.66 10.45 6.69 5.58 5.78 3.77 </line>
<line>GLY CA 13.99 10.31 9.81 8.84 5.42 5.37 3.77 </line>
<line>SER CA 15.92 12.32 10.67 8.44 5.86 3.92 </line>
<line>ASP CA 14.51 11.34 9.24 6.46 3.87 </line>
<line>ILE CA 10.68 7.49 5.53 3.78 </line>
<line>ALA CA 9.72 7.28 3.80 </line>
<line>ALA CA 6.07 3.75 </line>
<line>PHE CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ASN CA 203</line>
<line>HIS CA 268</line>
<line>GLY CA 302</line>
<line>SER CA 257</line>
<line>ASP CA 276</line>
<line>ILE CA 384</line>
<line>ALA CA 397</line>
<line>ALA CA 482</line>
<line>PHE CA 537</line>
<line>ILE CA 512</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DGD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DGDA</entryIDChain>
<sequence>LIDRQSSGNLAAFI</sequence>
<secondary-structure>HHHHH EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1466 CA LEU A 195 22.937 78.008 9.385 1.00 23.99 C </line>
<line>ATOM 1474 CA ILE A 196 24.322 74.728 8.145 1.00 20.06 C </line>
<line>ATOM 1482 CA ASP A 197 25.408 76.342 5.015 1.00 22.42 C </line>
<line>ATOM 1490 CA ARG A 198 27.320 78.789 7.131 1.00 24.73 C </line>
<line>ATOM 1501 CA GLN A 199 29.215 76.267 9.078 1.00 23.18 C </line>
<line>ATOM 1510 CA SER A 200 29.886 73.707 6.411 1.00 21.73 C </line>
<line>ATOM 1516 CA SER A 201 33.424 73.538 5.021 1.00 23.77 C </line>
<line>ATOM 1522 CA GLY A 202 31.788 72.746 1.739 1.00 24.63 C </line>
<line>ATOM 1526 CA ASN A 203 31.608 68.998 2.209 1.00 22.57 C </line>
<line>ATOM 1534 CA LEU A 204 27.920 68.152 2.673 1.00 22.53 C </line>
<line>ATOM 1542 CA ALA A 205 27.475 64.530 1.766 1.00 18.25 C </line>
<line>ATOM 1547 CA ALA A 206 24.185 63.416 3.182 1.00 20.00 C </line>
<line>ATOM 1552 CA PHE A 207 21.199 63.887 5.364 1.00 20.37 C </line>
<line>ATOM 1563 CA ILE A 208 19.978 61.040 7.509 1.00 22.80 C </line>
</atom-coordinate>
<distance-map>
<line> ILE PHE ALA ALA LEU ASN GLY SER SER GLN ARG ASP ILE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 17.33 14.78 15.90 16.13 12.92 14.42 12.83 12.21 8.70 6.52 4.99 5.29 3.77 </line>
<line>ILE CA 14.37 11.62 12.35 12.44 9.28 11.01 10.04 9.70 5.92 5.21 5.15 3.69 </line>
<line>ASP CA 16.43 13.15 13.11 12.42 8.88 10.01 8.02 8.49 5.38 5.57 3.76 </line>
<line>ARG CA 19.21 16.21 16.18 15.24 11.55 11.77 9.25 8.32 5.74 3.71 </line>
<line>GLN CA 17.88 15.21 15.01 13.94 10.42 10.28 8.54 6.45 3.76 </line>
<line>SER CA 16.12 13.15 12.20 10.56 6.98 6.54 5.14 3.81 </line>
<line>SER CA 18.53 15.58 13.83 11.28 8.05 5.64 3.75 </line>
<line>GLY CA 17.60 14.27 12.12 9.28 6.08 3.78 </line>
<line>ASN CA 15.06 12.02 9.34 6.10 3.81 </line>
<line>LEU CA 11.71 8.40 6.05 3.76 </line>
<line>ALA CA 10.07 7.26 3.75 </line>
<line>ALA CA 6.49 3.73 </line>
<line>PHE CA 3.77 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LEU CA 232</line>
<line>ILE CA 322</line>
<line>ASP CA 271</line>
<line>ARG CA 189</line>
<line>GLN CA 211</line>
<line>SER CA 246</line>
<line>SER CA 194</line>
<line>GLY CA 216</line>
<line>ASN CA 267</line>
<line>LEU CA 357</line>
<line>ALA CA 396</line>
<line>ALA CA 487</line>
<line>PHE CA 564</line>
<line>ILE CA 571</line>
</n14>
</entryChain>
<parallel>
<x>-33.46699905395508</x>
<y>-62.39500045776367</y>
<z>54.54199981689453</z>
</parallel>
<rotation>
<x>-0.19499999284744263</x>
<y>-0.9010000228881836</y>
<z>0.3869999945163727</z>
<x>-0.828000009059906</x>
<y>0.3630000054836273</y>
<z>0.42800000309944153</z>
<x>-0.5260000228881836</x>
<y>-0.2370000034570694</y>
<z>-0.8169999718666077</z>
</rotation>
<rmsd>2.9461710453033447</rmsd>
<dmax>4.165341854095459</dmax>
</indel>