NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DIEA-2GVEA
confEVID 1DIEA-2GVEA
pdbIDA 1DIE
pdbIDB 2GVE
pdbChainA A
pdbChainB A
identity 0.643800020217896
indelSize 1
alignment <alignment>
<seq1>--VQPTPADHFTFGLWTVGWTGADPFGVATRKNLDPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGIAQALWAEKLFHIDLNGQRGIKYDQDLVFGHGDLTSAFFTVDLLENGFPNGGPKYTGPRHFDYKPSRTDGYDGVWDSAKANMSMYLLLKERALAFRADPEVQEAMKTSGVFELGETTLNAGESAADLMNDSASFAGFDAEAAAERNFAFIRLNQLAIEHLLGSR-</seq1>
<seq2>MNYQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVESVRRLAELGAHGVTFHDDDLIPFGSSDSEREEHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQNGIKYDQDLRFGAGDLRAAFWLVDLLES------AGYSGPRHFDFKPPRTEDFDGVWASAAGCMRNYLILKERAAAFRADPEVQEALRASRLDELARPTAA--DGLQALLDDRSAFEEFDVDAAAARGMAFERLDQLAMDHLLGARG</seq2>
<ss_1>-- EEEEHHHH HHHHHHHHHH EEEEEHHHH HHHHHHHHHHHHHHHHHH EE HHHHHHHHHHHHHHHHHHHH EEEEEE EEE HHHHHHHHHHHHHHHHHHHHH EEEE HHHHHHHGGG GGG EE HHHHH HHHHHHHHHH EEEE HHHHHHHHHHHHH EEE HHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHH GGG HHHHH HHHGGG HHHHHHHHHHHH -</ss_1>
<ss_2> EEEEHHHH HHHHHHHHHH EEEEEHHHH HHHHHHHHHHHHHHHHH EE HHHHHHHHHHHHHHHHHHHH EEEEEE EEE HHHHHHHHHHHHHHHHHHHHH EEEE HHHHHHHGGG EE HHHHH HHHHHHHHHH EEEE HHHHHHHHHHHHH------ EEE HHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHH -- HHHHH HHHHH HHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2GVE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2GVEA</entryIDChain>
<sequence>RPTAA--DGLQA</sequence>
<secondary-structure> -- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 5621 CA ARG A 340 20.005 67.354 69.647 1.00 14.84 C </line>
<line>ATOM 5648 CA PRO A 341 18.077 67.529 66.339 1.00 16.69 C </line>
<line>ATOM 5662 CA THR A 342 19.306 70.069 63.788 1.00 13.00 C </line>
<line>ATOM 5677 CA ALA A 343 15.961 71.584 62.791 1.00 20.38 C </line>
<line>ATOM 5688 CA ALA A 344 13.313 70.111 65.089 1.00 22.71 C </line>
<line>ATOM 5699 CA ASP A 345 11.488 73.416 64.575 1.00 23.83 C </line>
<line>ATOM 5711 CA GLY A 346 10.954 72.290 60.979 1.00 16.61 C </line>
<line>ATOM 5719 CA LEU A 347 11.978 73.531 57.545 1.00 13.21 C </line>
<line>ATOM 5739 CA GLN A 348 9.946 76.745 57.344 1.00 17.88 C </line>
<line>ATOM 5759 CA ALA A 349 11.252 77.744 60.776 1.00 13.28 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLN LEU GLY ASP ALA ALA THR PRO ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 16.23 18.46 15.78 13.47 11.62 8.55 9.01 6.50 3.83 </line>
<line>PRO CA 13.49 15.23 12.27 10.11 9.01 5.56 5.79 3.80 </line>
<line>THR CA 11.53 13.18 10.23 9.09 8.54 6.13 3.81 </line>
<line>ALA CA 8.01 9.62 6.87 5.37 5.15 3.80 </line>
<line>ALA CA 9.01 10.74 8.39 5.22 3.81 </line>
<line>ASP CA 5.76 8.11 7.05 3.81 </line>
<line>GLY CA 5.47 5.84 3.79 </line>
<line>LEU CA 5.36 3.81 </line>
<line>GLN CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 227</line>
<line>PRO CA 229</line>
<line>THR CA 288</line>
<line>ALA CA 276</line>
<line>ALA CA 219</line>
<line>ASP CA 216</line>
<line>GLY CA 194</line>
<line>LEU CA 205</line>
<line>GLN CA 207</line>
<line>ALA CA 236</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DIE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DIEA</entryIDChain>
<sequence>ETTLNAGESAAD</sequence>
<secondary-structure> HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2654 CA GLU A 345 65.465 69.579 12.406 1.00 25.74 C </line>
<line>ATOM 2663 CA THR A 346 65.847 71.629 9.217 1.00 25.54 C </line>
<line>ATOM 2670 CA THR A 347 67.044 69.622 6.216 1.00 26.05 C </line>
<line>ATOM 2677 CA LEU A 348 69.790 71.940 5.170 1.00 26.59 C </line>
<line>ATOM 2685 CA ASN A 349 72.621 72.953 7.545 1.00 30.32 C </line>
<line>ATOM 2693 CA ALA A 350 72.754 76.655 8.485 1.00 32.32 C </line>
<line>ATOM 2698 CA GLY A 351 73.882 78.674 5.531 1.00 33.56 C </line>
<line>ATOM 2702 CA GLU A 352 74.140 75.516 3.271 1.00 33.17 C </line>
<line>ATOM 2711 CA SER A 353 72.859 76.397 -0.268 1.00 34.15 C </line>
<line>ATOM 2717 CA ALA A 354 71.032 74.243 -2.840 1.00 32.31 C </line>
<line>ATOM 2722 CA ALA A 355 74.336 74.085 -4.752 1.00 32.49 C </line>
<line>ATOM 2727 CA ASP A 356 76.222 73.274 -1.583 1.00 35.04 C </line>
</atom-coordinate>
<distance-map>
<line> ASP ALA ALA SER GLU GLY ALA ASN LEU THR THR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 18.03 19.83 16.89 16.18 13.93 14.17 10.89 9.29 8.75 6.39 3.81 </line>
<line>THR CA 15.07 16.53 13.38 12.72 10.92 11.30 8.57 7.10 5.66 3.80 </line>
<line>THR CA 12.59 13.91 10.92 11.03 9.68 11.37 9.34 6.63 3.74 </line>
<line>LEU CA 9.42 11.12 8.43 7.67 5.94 7.89 6.48 3.83 </line>
<line>ASN CA 9.82 12.47 10.58 8.54 5.21 6.19 3.82 </line>
<line>ALA CA 11.17 13.58 11.71 8.76 5.51 3.75 </line>
<line>GLY CA 9.23 11.27 9.89 6.31 3.89 </line>
<line>GLU CA 5.74 8.15 6.97 3.87 </line>
<line>SER CA 4.77 5.26 3.82 </line>
<line>ALA CA 5.43 3.82 </line>
<line>ALA CA 3.78 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>GLU CA 148</line>
<line>THR CA 125</line>
<line>THR CA 160</line>
<line>LEU CA 151</line>
<line>ASN CA 131</line>
<line>ALA CA 96</line>
<line>GLY CA 90</line>
<line>GLU CA 121</line>
<line>SER CA 112</line>
<line>ALA CA 124</line>
<line>ALA CA 121</line>
<line>ASP CA 129</line>
</n14>
</entryChain>
<parallel>
<x>-54.7140007019043</x>
<y>-1.9989999532699585</y>
<z>58.75400161743164</z>
</parallel>
<rotation>
<x>-0.5609999895095825</x>
<y>0.7400000095367432</y>
<z>0.3709999918937683</z>
<x>-0.8190000057220459</x>
<y>-0.5630000233650208</y>
<z>-0.11400000005960464</z>
<x>0.125</x>
<y>-0.36800000071525574</y>
<z>0.921999990940094</z>
</rotation>
<rmsd>1.5380799770355225</rmsd>
<dmax>2.6394829750061035</dmax>
</indel>