NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DJ2A-1ADIA
confEVID 1DJ2A-1ADIA
pdbIDA 1DJ2
pdbIDB 1ADI
pdbChainA A
pdbChainB A
identity 0.439000010490417
indelSize 2
alignment <alignment>
<seq1>IGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARF-QGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK------</seq1>
<seq2>----GNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVI-NGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA</seq2>
<ss_1> EEEEEE HHHHHHHGGGG EEEE EEE EEEEE GGG EEEE HHHHHHHHHHHH EE HHHHHHHHHHHHH HHHHHHHHH GGGGG HHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHHHH HHHHHHHHHH EEEE GGG HHHH HHHH EEEEE EEE HHHHHHHHH EEEEE HHHHHHHHHH EEEEE GGGG EEEEE EEE HHHHHH EEEEEEE HHHHHHHHHHHHH EEE EEE ------</ss_1>
<ss_2>---- EEEEEE HHHHHHH EEEE EEEEE- EEEEE EEEE HHHHHHHHHHH HHHHEE HHHHHHHHHHH HHHHHHHHH GGGG HHHHHHHHHHHHHHHHHHHH HHHHHHHHH HHHHGGG HHHHHHHHHH EEEE GGG GGHHHHHH EEEEEE EEE HHHHHHHHH EEEEEE HHHHHHH EEEEE GGG EEEEEEEEEEE EEE EEEEEEE HHHHHHHHHHHH EEE EEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DJ2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DJ2A</entryIDChain>
<sequence>AAARF-QGFKY</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 1298 CA ALA A 187 7.090 89.882 68.528 1.00 86.05 C </line>
<line>ATOM 1303 CA ALA A 188 6.460 93.084 70.502 1.00 91.17 C </line>
<line>ATOM 1308 CA ALA A 189 4.740 91.315 73.403 1.00 93.05 C </line>
<line>ATOM 1313 CA ARG A 190 7.700 88.951 73.707 1.00 96.04 C </line>
<line>ATOM 1324 CA PHE A 191 10.701 91.272 73.337 1.00 98.99 C </line>
<line>ATOM 1335 CA GLN A 192 10.638 94.712 74.958 1.00 99.70 C </line>
<line>ATOM 1344 CA GLY A 193 13.577 95.731 72.784 1.00 97.94 C </line>
<line>ATOM 1348 CA PHE A 194 11.425 95.342 69.671 1.00 97.25 C </line>
<line>ATOM 1359 CA LYS A 195 10.635 98.856 68.416 1.00100.00 C </line>
<line>ATOM 1368 CA TYR A 196 7.044 98.420 67.244 1.00 99.84 C </line>
</atom-coordinate>
<distance-map>
<line> TYR LYS PHE GLY GLN PHE ARG ALA ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 8.63 9.65 7.06 9.72 8.79 6.17 5.30 5.60 3.81 </line>
<line>ALA CA 6.28 7.42 5.52 7.93 6.32 5.41 5.38 3.81 </line>
<line>ALA CA 9.68 10.79 8.65 9.90 6.98 5.96 3.80 </line>
<line>ARG CA 11.48 11.61 8.43 9.02 6.59 3.81 </line>
<line>PHE CA 10.08 9.04 5.53 5.33 3.80 </line>
<line>GLN CA 9.28 7.74 5.38 3.80 </line>
<line>GLY CA 8.98 6.12 3.80 </line>
<line>PHE CA 5.88 3.81 </line>
<line>LYS CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 342</line>
<line>ALA CA 270</line>
<line>ALA CA 200</line>
<line>ARG CA 231</line>
<line>PHE CA 222</line>
<line>GLN CA 180</line>
<line>GLY CA 196</line>
<line>PHE CA 264</line>
<line>LYS CA 225</line>
<line>TYR CA 254</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ADIA</entryIDChain>
<sequence>HNFQLVNYYKA</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1598 CA HIS A 168 26.436 40.218 -42.778 1.00 21.07 C </line>
<line>ATOM 1610 CA ASN A 169 28.203 40.596 -46.091 1.00 24.91 C </line>
<line>ATOM 1621 CA PHE A 170 25.236 39.188 -47.920 1.00 21.59 C </line>
<line>ATOM 1633 CA GLN A 171 23.226 41.877 -46.163 1.00 26.12 C </line>
<line>ATOM 1645 CA LEU A 172 25.668 44.660 -47.000 1.00 27.01 C </line>
<line>ATOM 1654 CA VAL A 173 26.380 44.197 -50.689 1.00 26.89 C </line>
<line>ATOM 1662 CA ASN A 174 22.932 42.913 -51.713 1.00 26.04 C </line>
<line>ATOM 1673 CA TYR A 175 20.548 45.053 -49.625 1.00 21.86 C </line>
<line>ATOM 1687 CA TYR A 176 22.517 48.218 -48.804 1.00 28.33 C </line>
<line>ATOM 1701 CA LYS A 177 24.924 48.218 -51.726 1.00 31.36 C </line>
<line>ATOM 1714 CA ALA A 178 27.989 48.829 -49.608 1.00 32.01 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS TYR TYR ASN VAL LEU GLN PHE ASN HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 11.10 12.10 10.76 10.24 9.97 8.86 6.18 4.95 5.38 3.77 </line>
<line>ASN CA 8.96 10.03 9.89 9.54 8.05 6.12 4.88 5.14 3.76 </line>
<line>PHE CA 10.17 9.80 9.47 7.70 5.79 5.84 5.57 3.79 </line>
<line>GLN CA 9.10 8.60 6.91 5.41 5.65 5.98 3.80 </line>
<line>LEU CA 5.44 5.96 5.08 5.77 5.72 3.79 </line>
<line>VAL CA 5.02 4.40 5.89 5.99 3.82 </line>
<line>ASN CA 8.06 5.67 6.06 3.82 </line>
<line>TYR CA 8.34 5.79 3.82 </line>
<line>TYR CA 5.56 3.79 </line>
<line>LYS CA 3.78 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 453</line>
<line>ASN CA 377</line>
<line>PHE CA 294</line>
<line>GLN CA 333</line>
<line>LEU CA 358</line>
<line>VAL CA 260</line>
<line>ASN CA 214</line>
<line>TYR CA 244</line>
<line>TYR CA 282</line>
<line>LYS CA 242</line>
<line>ALA CA 271</line>
</n14>
</entryChain>
<parallel>
<x>-15.303999900817871</x>
<y>49.69599914550781</y>
<z>119.62300109863281</z>
</parallel>
<rotation>
<x>-0.7590000033378601</x>
<y>0.3700000047683716</y>
<z>-0.5360000133514404</z>
<x>0.6489999890327454</x>
<y>0.4909999966621399</y>
<z>-0.5809999704360962</z>
<x>0.04800000041723251</x>
<y>-0.7879999876022339</y>
<z>-0.6129999756813049</z>
</rotation>
<rmsd>2.5068199634552</rmsd>
<dmax>4.251628875732422</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ADIA</entryIDChain>
<sequence>HTLVI-NGEKT</sequence>
<secondary-structure>EEEEE- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 395 CA HIS A 41 33.893 60.394 -18.688 1.00 34.87 C </line>
<line>ATOM 407 CA THR A 42 36.332 63.308 -18.982 1.00 40.53 C </line>
<line>ATOM 416 CA LEU A 43 39.671 63.344 -17.174 1.00 45.45 C </line>
<line>ATOM 425 CA VAL A 44 42.775 65.413 -16.533 1.00 45.81 C </line>
<line>ATOM 433 CA ILE A 45 45.884 63.218 -16.211 1.00 46.79 C </line>
<line>ATOM 442 CA ASN A 46 49.385 64.679 -15.932 1.00 50.87 C </line>
<line>ATOM 453 CA GLY A 47 48.384 68.000 -17.514 1.00 53.39 C </line>
<line>ATOM 458 CA GLU A 48 46.406 66.152 -20.189 1.00 54.91 C </line>
<line>ATOM 468 CA LYS A 49 42.605 66.219 -20.462 1.00 51.58 C </line>
<line>ATOM 481 CA THR A 50 41.580 62.836 -21.857 1.00 45.66 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS GLU GLY ASN ILE VAL LEU THR HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 8.67 10.63 13.86 16.41 16.31 12.57 10.43 6.66 3.81 </line>
<line>THR CA 6.00 7.07 10.54 13.02 13.47 9.95 7.21 3.80 </line>
<line>LEU CA 5.08 5.26 7.90 9.88 9.88 6.29 3.79 </line>
<line>VAL CA 6.03 4.01 5.21 6.25 6.68 3.82 </line>
<line>ILE CA 7.11 6.15 4.97 5.55 3.80 </line>
<line>ASN CA 9.97 8.30 5.40 3.81 </line>
<line>GLY CA 9.58 6.73 3.81 </line>
<line>GLU CA 6.09 3.81 </line>
<line>LYS CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>HIS CA 489</line>
<line>THR CA 394</line>
<line>LEU CA 374</line>
<line>VAL CA 274</line>
<line>ILE CA 284</line>
<line>ASN CA 177</line>
<line>GLY CA 131</line>
<line>GLU CA 180</line>
<line>LYS CA 230</line>
<line>THR CA 321</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DJ2</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DJ2A</entryIDChain>
<sequence>HTIYNSEGKKF</sequence>
<secondary-structure>EEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 313 CA HIS A 59 26.538 77.453 47.905 1.00 55.75 C </line>
<line>ATOM 323 CA THR A 60 29.684 78.628 46.062 1.00 46.57 C </line>
<line>ATOM 330 CA ILE A 61 30.072 77.703 42.370 1.00 48.17 C </line>
<line>ATOM 338 CA TYR A 62 32.436 78.564 39.502 1.00 44.96 C </line>
<line>ATOM 350 CA ASN A 63 31.260 78.526 35.889 1.00 50.23 C </line>
<line>ATOM 358 CA SER A 64 33.242 77.413 32.827 1.00 54.42 C </line>
<line>ATOM 364 CA GLU A 65 35.285 80.630 32.936 1.00 58.24 C </line>
<line>ATOM 373 CA GLY A 66 35.980 80.910 36.651 1.00 50.02 C </line>
<line>ATOM 377 CA LYS A 67 33.381 83.418 37.854 1.00 50.96 C </line>
<line>ATOM 386 CA LYS A 68 32.494 82.998 41.531 1.00 44.79 C </line>
<line>ATOM 395 CA PHE A 69 28.738 82.688 42.071 1.00 43.61 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LYS LYS GLY GLU SER ASN TYR ILE THR HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 8.14 10.34 13.54 15.09 17.63 16.50 12.96 10.33 6.57 3.83 </line>
<line>THR CA 5.77 6.89 10.20 11.55 14.41 13.76 10.29 7.11 3.83 </line>
<line>ILE CA 5.17 5.88 8.00 8.83 11.17 10.06 6.64 3.82 </line>
<line>TYR CA 6.11 4.88 5.21 5.12 7.45 6.82 3.80 </line>
<line>ASN CA 7.87 7.30 5.68 5.34 5.42 3.81 </line>
<line>SER CA 11.56 10.37 7.83 5.86 3.81 </line>
<line>GLU CA 11.43 9.34 5.97 3.79 </line>
<line>GLY CA 9.22 6.35 3.81 </line>
<line>LYS CA 6.31 3.81 </line>
<line>LYS CA 3.81 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>HIS CA 430</line>
<line>THR CA 398</line>
<line>ILE CA 382</line>
<line>TYR CA 295</line>
<line>ASN CA 280</line>
<line>SER CA 219</line>
<line>GLU CA 152</line>
<line>GLY CA 178</line>
<line>LYS CA 202</line>
<line>LYS CA 256</line>
<line>PHE CA 336</line>
</n14>
</entryChain>
<parallel>
<x>11.01200008392334</x>
<y>-15.166000366210938</y>
<z>-57.54899978637695</z>
</parallel>
<rotation>
<x>0.20499999821186066</x>
<y>0.9620000123977661</y>
<z>0.17800000309944153</z>
<x>0.32100000977516174</x>
<y>0.10599999874830246</y>
<z>-0.9409999847412109</z>
<x>-0.925000011920929</x>
<y>0.25</y>
<z>-0.28700000047683716</z>
</rotation>
<rmsd>0.9171940088272095</rmsd>
<dmax>1.664489984512329</dmax>
</indel>