NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DJ2B-1ADIA
confEVID 1DJ2B-1ADIA
pdbIDA 1DJ2
pdbIDB 1ADI
pdbChainA B
pdbChainB A
identity 0.439000010490417
indelSize 2
alignment <alignment>
<seq1>IGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARF-QGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK------</seq1>
<seq2>----GNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVI-NGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA</seq2>
<ss_1> EEEEEE HHHHHHHGGGG EEEE EEE EEEEE GGG EEEE HHHHHHHHHHHH EE HHHHHHHHHHGGG HHHHHHHHH GGGGG HHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH EEEE GGG HHHHHH HHHH EEEEE EEE HHHHHHHHH EEEEE HHHHHHHHHH EEEEE GGGGGG EEEEE EEE HHHHHH EEEEEEE HHHHHHHHHHHHH EEE EEE ------</ss_1>
<ss_2>---- EEEEEE HHHHHHH EEEE EEEEE- EEEEE EEEE HHHHHHHHHHH HHHHEE HHHHHHHHHHH HHHHHHHHH GGGG HHHHHHHHHHHHHHHHHHHH HHHHHHHHH HHHHGGG HHHHHHHHHH EEEE GGG GGHHHHHH EEEEEE EEE HHHHHHHHH EEEEEE HHHHHHH EEEEE GGG EEEEEEEEEEE EEE EEEEEEE HHHHHHHHHHHH EEE EEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DJ2</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DJ2B</entryIDChain>
<sequence>AAARF-QGFKY</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 4577 CA ALA B 187 6.830 82.022 78.473 1.00 85.54 C </line>
<line>ATOM 4582 CA ALA B 188 6.628 84.709 81.174 1.00 90.17 C </line>
<line>ATOM 4587 CA ALA B 189 8.151 87.440 79.004 1.00 93.28 C </line>
<line>ATOM 4592 CA ARG B 190 5.604 86.657 76.285 1.00 97.39 C </line>
<line>ATOM 4603 CA PHE B 191 2.293 86.251 78.128 1.00 97.36 C </line>
<line>ATOM 4614 CA GLN B 192 1.666 88.583 81.060 1.00 98.74 C </line>
<line>ATOM 4623 CA GLY B 193 -1.066 86.250 82.283 1.00 98.30 C </line>
<line>ATOM 4627 CA PHE B 194 1.531 83.531 82.909 1.00 97.54 C </line>
<line>ATOM 4638 CA LYS B 195 1.937 83.210 86.690 1.00100.00 C </line>
<line>ATOM 4647 CA TYR B 196 5.699 82.725 87.010 1.00100.00 C </line>
</atom-coordinate>
<distance-map>
<line> TYR LYS PHE GLY GLN PHE ARG ALA ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 8.64 9.64 7.07 9.73 8.74 6.21 5.27 5.60 3.82 </line>
<line>ALA CA 6.23 7.39 5.51 7.92 6.30 5.52 5.36 3.81 </line>
<line>ALA CA 9.61 10.75 8.62 9.86 6.90 6.04 3.81 </line>
<line>ARG CA 11.42 11.56 8.38 8.98 6.48 3.81 </line>
<line>PHE CA 10.15 9.09 5.55 5.34 3.80 </line>
<line>GLN CA 9.27 7.79 5.38 3.80 </line>
<line>GLY CA 8.97 6.14 3.81 </line>
<line>PHE CA 5.90 3.82 </line>
<line>LYS CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 342</line>
<line>ALA CA 269</line>
<line>ALA CA 200</line>
<line>ARG CA 232</line>
<line>PHE CA 223</line>
<line>GLN CA 178</line>
<line>GLY CA 195</line>
<line>PHE CA 263</line>
<line>LYS CA 227</line>
<line>TYR CA 251</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ADIA</entryIDChain>
<sequence>HNFQLVNYYKA</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1598 CA HIS A 168 26.436 40.218 -42.778 1.00 21.07 C </line>
<line>ATOM 1610 CA ASN A 169 28.203 40.596 -46.091 1.00 24.91 C </line>
<line>ATOM 1621 CA PHE A 170 25.236 39.188 -47.920 1.00 21.59 C </line>
<line>ATOM 1633 CA GLN A 171 23.226 41.877 -46.163 1.00 26.12 C </line>
<line>ATOM 1645 CA LEU A 172 25.668 44.660 -47.000 1.00 27.01 C </line>
<line>ATOM 1654 CA VAL A 173 26.380 44.197 -50.689 1.00 26.89 C </line>
<line>ATOM 1662 CA ASN A 174 22.932 42.913 -51.713 1.00 26.04 C </line>
<line>ATOM 1673 CA TYR A 175 20.548 45.053 -49.625 1.00 21.86 C </line>
<line>ATOM 1687 CA TYR A 176 22.517 48.218 -48.804 1.00 28.33 C </line>
<line>ATOM 1701 CA LYS A 177 24.924 48.218 -51.726 1.00 31.36 C </line>
<line>ATOM 1714 CA ALA A 178 27.989 48.829 -49.608 1.00 32.01 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS TYR TYR ASN VAL LEU GLN PHE ASN HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 11.10 12.10 10.76 10.24 9.97 8.86 6.18 4.95 5.38 3.77 </line>
<line>ASN CA 8.96 10.03 9.89 9.54 8.05 6.12 4.88 5.14 3.76 </line>
<line>PHE CA 10.17 9.80 9.47 7.70 5.79 5.84 5.57 3.79 </line>
<line>GLN CA 9.10 8.60 6.91 5.41 5.65 5.98 3.80 </line>
<line>LEU CA 5.44 5.96 5.08 5.77 5.72 3.79 </line>
<line>VAL CA 5.02 4.40 5.89 5.99 3.82 </line>
<line>ASN CA 8.06 5.67 6.06 3.82 </line>
<line>TYR CA 8.34 5.79 3.82 </line>
<line>TYR CA 5.56 3.79 </line>
<line>LYS CA 3.78 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 453</line>
<line>ASN CA 377</line>
<line>PHE CA 294</line>
<line>GLN CA 333</line>
<line>LEU CA 358</line>
<line>VAL CA 260</line>
<line>ASN CA 214</line>
<line>TYR CA 244</line>
<line>TYR CA 282</line>
<line>LYS CA 242</line>
<line>ALA CA 271</line>
</n14>
</entryChain>
<parallel>
<x>-20.391000747680664</x>
<y>42.84000015258789</y>
<z>127.4260025024414</z>
</parallel>
<rotation>
<x>0.7540000081062317</x>
<y>-0.30399999022483826</y>
<z>0.5820000171661377</z>
<x>-0.6340000033378601</x>
<y>-0.5659999847412109</y>
<z>0.5270000100135803</z>
<x>0.16899999976158142</x>
<y>-0.765999972820282</y>
<z>-0.6200000047683716</z>
</rotation>
<rmsd>2.5142641067504883</rmsd>
<dmax>4.2997050285339355</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1ADIA</entryIDChain>
<sequence>HTLVI-NGEKT</sequence>
<secondary-structure>EEEEE- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 395 CA HIS A 41 33.893 60.394 -18.688 1.00 34.87 C </line>
<line>ATOM 407 CA THR A 42 36.332 63.308 -18.982 1.00 40.53 C </line>
<line>ATOM 416 CA LEU A 43 39.671 63.344 -17.174 1.00 45.45 C </line>
<line>ATOM 425 CA VAL A 44 42.775 65.413 -16.533 1.00 45.81 C </line>
<line>ATOM 433 CA ILE A 45 45.884 63.218 -16.211 1.00 46.79 C </line>
<line>ATOM 442 CA ASN A 46 49.385 64.679 -15.932 1.00 50.87 C </line>
<line>ATOM 453 CA GLY A 47 48.384 68.000 -17.514 1.00 53.39 C </line>
<line>ATOM 458 CA GLU A 48 46.406 66.152 -20.189 1.00 54.91 C </line>
<line>ATOM 468 CA LYS A 49 42.605 66.219 -20.462 1.00 51.58 C </line>
<line>ATOM 481 CA THR A 50 41.580 62.836 -21.857 1.00 45.66 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS GLU GLY ASN ILE VAL LEU THR HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 8.67 10.63 13.86 16.41 16.31 12.57 10.43 6.66 3.81 </line>
<line>THR CA 6.00 7.07 10.54 13.02 13.47 9.95 7.21 3.80 </line>
<line>LEU CA 5.08 5.26 7.90 9.88 9.88 6.29 3.79 </line>
<line>VAL CA 6.03 4.01 5.21 6.25 6.68 3.82 </line>
<line>ILE CA 7.11 6.15 4.97 5.55 3.80 </line>
<line>ASN CA 9.97 8.30 5.40 3.81 </line>
<line>GLY CA 9.58 6.73 3.81 </line>
<line>GLU CA 6.09 3.81 </line>
<line>LYS CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>HIS CA 489</line>
<line>THR CA 394</line>
<line>LEU CA 374</line>
<line>VAL CA 274</line>
<line>ILE CA 284</line>
<line>ASN CA 177</line>
<line>GLY CA 131</line>
<line>GLU CA 180</line>
<line>LYS CA 230</line>
<line>THR CA 321</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DJ2</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DJ2B</entryIDChain>
<sequence>HTIYNSEGKKF</sequence>
<secondary-structure>EEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3592 CA HIS B 59 -6.484 55.719 69.325 1.00 61.32 C </line>
<line>ATOM 3602 CA THR B 60 -9.477 53.589 70.366 1.00 59.18 C </line>
<line>ATOM 3609 CA ILE B 61 -9.151 49.781 70.309 1.00 58.16 C </line>
<line>ATOM 3617 CA TYR B 62 -11.094 46.773 71.604 1.00 56.54 C </line>
<line>ATOM 3629 CA ASN B 63 -9.291 43.540 72.557 1.00 59.66 C </line>
<line>ATOM 3637 CA SER B 64 -10.579 40.005 71.896 1.00 61.45 C </line>
<line>ATOM 3643 CA GLU B 65 -13.155 40.402 74.683 1.00 67.00 C </line>
<line>ATOM 3652 CA GLY B 66 -14.326 43.946 74.014 1.00 60.97 C </line>
<line>ATOM 3656 CA LYS B 67 -12.387 46.141 76.442 1.00 59.12 C </line>
<line>ATOM 3665 CA LYS B 68 -12.245 49.762 75.296 1.00 56.60 C </line>
<line>ATOM 3674 CA PHE B 69 -8.632 50.949 75.252 1.00 52.39 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LYS LYS GLY GLU SER ASN TYR ILE THR HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 7.91 10.21 13.31 14.90 17.54 16.44 12.91 10.32 6.58 3.82 </line>
<line>THR CA 5.62 6.83 10.04 11.39 14.35 13.71 10.29 7.11 3.82 </line>
<line>ILE CA 5.11 5.87 7.83 8.63 11.10 10.01 6.63 3.81 </line>
<line>TYR CA 6.07 4.89 5.05 4.92 7.37 6.79 3.82 </line>
<line>ASN CA 7.91 7.41 5.61 5.26 5.41 3.82 </line>
<line>SER CA 11.61 10.47 7.85 5.84 3.82 </line>
<line>GLU CA 11.49 9.42 6.05 3.79 </line>
<line>GLY CA 9.11 6.31 3.80 </line>
<line>LYS CA 6.22 3.80 </line>
<line>LYS CA 3.80 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>HIS CA 436</line>
<line>THR CA 400</line>
<line>ILE CA 381</line>
<line>TYR CA 294</line>
<line>ASN CA 281</line>
<line>SER CA 219</line>
<line>GLU CA 155</line>
<line>GLY CA 182</line>
<line>LYS CA 212</line>
<line>LYS CA 252</line>
<line>PHE CA 335</line>
</n14>
</entryChain>
<parallel>
<x>53.512001037597656</x>
<y>16.82699966430664</y>
<z>-90.06500244140625</z>
</parallel>
<rotation>
<x>-0.10300000011920929</x>
<y>-0.9950000047683716</y>
<z>0.020999999716877937</z>
<x>-0.8600000143051147</x>
<y>0.07800000160932541</y>
<z>-0.5049999952316284</z>
<x>0.5</x>
<y>-0.07000000029802322</y>
<z>-0.8629999756813049</z>
</rotation>
<rmsd>0.9522280097007751</rmsd>
<dmax>1.6872060298919678</dmax>
</indel>