NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DJ2B-1ADIB
confEVID 1DJ2B-1ADIB
pdbIDA 1DJ2
pdbIDB 1ADI
pdbChainA B
pdbChainB B
identity 0.439000010490417
indelSize 2
alignment <alignment>
<seq1>IGSLSQVSGVLGCQWGDEGKGKLVDILAQHFDIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTTCVIGNGVVVHLPGLFKEIDGLESNGVSCKGRILVSDRAHLLFDFHQEVDGLRESELAKSFIGTTKRGIGPAYSSKVIRNGIRVGDLRHMDTLPQKLDLLLSDAAARF-QGFKYTPEMLREEVEAYKRYADRLEPYITDTVHFINDSISQKKKVLVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENLGTGGDLLRLAGQEFGTTTGRPRRCGWLDIVALKFSCQINGFASLNLTKLDVLSDLNEIQLGVAYKRSDGTPVKSFPGDLRLLEELHVEYEVLPGWKSDISSVRNYSDLPKAAQQYVERIEELVGVPIHYIGIGPGRDALIYK------</seq1>
<seq2>----GNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVIN-GEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA</seq2>
<ss_1> EEEEEE HHHHHHHGGGG EEEE EEE EEEEE GGG EEEE HHHHHHHHHHHH EE HHHHHHHHHHGGG HHHHHHHHH GGGGG HHHHHHHHHHHHHHH - HHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHH EEEE GGG HHHHHH HHHH EEEEE EEE HHHHHHHHH EEEEE HHHHHHHHHH EEEEE GGGGGG EEEEE EEE HHHHHH EEEEEEE HHHHHHHHHHHHH EEE EEE ------</ss_1>
<ss_2>---- EEEEEE HHHHHHH EEEE EEEE - EEEEE GGG EEEE HHHHHHHHHH EE HHHHHHHHHHHH GGG HHHHHHHH GGGG HHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHH EEEE GGG GGHHHH EEEEEE EEE HHHHHHHH EEEEEEHHHHHHHHHH EEEEE GGG EEEEEEEEEEE EEE HHHH EEEEEEE HHHHHHHHHHHHH EEEE EEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DJ2</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DJ2B</entryIDChain>
<sequence>AAARF-QGFKY</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 4577 CA ALA B 187 6.830 82.022 78.473 1.00 85.54 C </line>
<line>ATOM 4582 CA ALA B 188 6.628 84.709 81.174 1.00 90.17 C </line>
<line>ATOM 4587 CA ALA B 189 8.151 87.440 79.004 1.00 93.28 C </line>
<line>ATOM 4592 CA ARG B 190 5.604 86.657 76.285 1.00 97.39 C </line>
<line>ATOM 4603 CA PHE B 191 2.293 86.251 78.128 1.00 97.36 C </line>
<line>ATOM 4614 CA GLN B 192 1.666 88.583 81.060 1.00 98.74 C </line>
<line>ATOM 4623 CA GLY B 193 -1.066 86.250 82.283 1.00 98.30 C </line>
<line>ATOM 4627 CA PHE B 194 1.531 83.531 82.909 1.00 97.54 C </line>
<line>ATOM 4638 CA LYS B 195 1.937 83.210 86.690 1.00100.00 C </line>
<line>ATOM 4647 CA TYR B 196 5.699 82.725 87.010 1.00100.00 C </line>
</atom-coordinate>
<distance-map>
<line> TYR LYS PHE GLY GLN PHE ARG ALA ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 8.64 9.64 7.07 9.73 8.74 6.21 5.27 5.60 3.82 </line>
<line>ALA CA 6.23 7.39 5.51 7.92 6.30 5.52 5.36 3.81 </line>
<line>ALA CA 9.61 10.75 8.62 9.86 6.90 6.04 3.81 </line>
<line>ARG CA 11.42 11.56 8.38 8.98 6.48 3.81 </line>
<line>PHE CA 10.15 9.09 5.55 5.34 3.80 </line>
<line>GLN CA 9.27 7.79 5.38 3.80 </line>
<line>GLY CA 8.97 6.14 3.81 </line>
<line>PHE CA 5.90 3.82 </line>
<line>LYS CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 342</line>
<line>ALA CA 269</line>
<line>ALA CA 200</line>
<line>ARG CA 232</line>
<line>PHE CA 223</line>
<line>GLN CA 178</line>
<line>GLY CA 195</line>
<line>PHE CA 263</line>
<line>LYS CA 227</line>
<line>TYR CA 251</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1ADIB</entryIDChain>
<sequence>HNFQLVNYYKA</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 5776 CA HIS B 168 12.607 40.865 -43.845 1.00 23.39 C </line>
<line>ATOM 5788 CA ASN B 169 11.056 39.764 -47.168 1.00 20.27 C </line>
<line>ATOM 5799 CA PHE B 170 14.421 40.612 -48.689 1.00 20.44 C </line>
<line>ATOM 5811 CA GLN B 171 15.995 37.947 -46.446 1.00 20.35 C </line>
<line>ATOM 5823 CA LEU B 172 13.204 35.450 -46.813 1.00 14.49 C </line>
<line>ATOM 5832 CA VAL B 173 13.313 35.358 -50.590 1.00 15.09 C </line>
<line>ATOM 5840 CA ASN B 174 16.981 36.231 -51.262 1.00 21.21 C </line>
<line>ATOM 5851 CA TYR B 175 19.017 34.341 -48.616 1.00 23.28 C </line>
<line>ATOM 5865 CA TYR B 176 16.752 31.680 -47.233 1.00 19.50 C </line>
<line>ATOM 5879 CA LYS B 177 15.033 31.142 -50.616 1.00 21.95 C </line>
<line>ATOM 5892 CA ALA B 178 11.657 31.018 -48.836 1.00 20.10 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS TYR TYR ASN VAL LEU GLN PHE ASN HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 11.08 12.09 10.63 10.32 9.78 8.74 6.20 5.17 5.18 3.83 </line>
<line>ASN CA 8.92 10.10 9.89 9.74 8.02 6.02 4.83 5.31 3.79 </line>
<line>PHE CA 9.99 9.68 9.35 7.78 5.69 5.70 5.63 3.82 </line>
<line>GLN CA 8.52 8.04 6.36 5.18 5.21 5.57 3.76 </line>
<line>LEU CA 5.11 6.03 5.19 6.19 5.89 3.78 </line>
<line>VAL CA 4.97 4.55 6.05 6.12 3.83 </line>
<line>ASN CA 7.84 5.49 6.08 3.84 </line>
<line>TYR CA 8.08 5.49 3.76 </line>
<line>TYR CA 5.38 3.83 </line>
<line>LYS CA 3.82 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>HIS CA 439</line>
<line>ASN CA 386</line>
<line>PHE CA 290</line>
<line>GLN CA 333</line>
<line>LEU CA 364</line>
<line>VAL CA 274</line>
<line>ASN CA 216</line>
<line>TYR CA 243</line>
<line>TYR CA 279</line>
<line>LYS CA 238</line>
<line>ALA CA 273</line>
</n14>
</entryChain>
<parallel>
<x>-11.050000190734863</x>
<y>48.569000244140625</y>
<z>127.4229965209961</z>
</parallel>
<rotation>
<x>-0.7329999804496765</x>
<y>0.4259999990463257</y>
<z>-0.5299999713897705</z>
<x>0.6759999990463257</x>
<y>0.3709999918937683</y>
<z>-0.6370000243186951</z>
<x>-0.07500000298023224</x>
<y>-0.824999988079071</y>
<z>-0.5600000023841858</z>
</rotation>
<rmsd>2.6505239009857178</rmsd>
<dmax>4.612325191497803</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1ADI</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1ADIB</entryIDChain>
<sequence>TLVIN-GEKTV</sequence>
<secondary-structure>EEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4575 CA THR B 42 -1.506 22.462 -18.393 1.00 27.84 C </line>
<line>ATOM 4584 CA LEU B 43 -4.698 22.990 -16.345 1.00 31.30 C </line>
<line>ATOM 4593 CA VAL B 44 -8.212 21.507 -16.032 1.00 35.97 C </line>
<line>ATOM 4601 CA ILE B 45 -11.341 23.534 -16.889 1.00 41.37 C </line>
<line>ATOM 4610 CA ASN B 46 -14.289 21.506 -15.541 1.00 45.86 C </line>
<line>ATOM 4621 CA GLY B 47 -12.620 18.157 -16.297 1.00 49.03 C </line>
<line>ATOM 4626 CA GLU B 48 -10.888 19.073 -19.571 1.00 51.53 C </line>
<line>ATOM 4636 CA LYS B 49 -7.109 19.468 -20.099 1.00 48.08 C </line>
<line>ATOM 4649 CA THR B 50 -6.289 22.845 -21.704 1.00 41.64 C </line>
<line>ATOM 4658 CA VAL B 51 -2.850 24.432 -22.121 1.00 33.54 C </line>
</atom-coordinate>
<distance-map>
<line> VAL THR LYS GLU GLY ASN ILE VAL LEU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.43 5.83 6.58 10.04 12.10 13.13 10.01 7.17 3.83 </line>
<line>LEU CA 6.23 5.59 5.68 8.00 9.28 9.74 6.69 3.83 </line>
<line>VAL CA 8.62 6.14 4.68 5.06 5.54 6.10 3.83 </line>
<line>ILE CA 10.01 7.01 6.69 5.22 5.56 3.82 </line>
<line>ASN CA 13.52 10.19 8.75 5.81 3.82 </line>
<line>GLY CA 12.99 9.55 6.82 3.82 </line>
<line>GLU CA 9.99 6.32 3.84 </line>
<line>LYS CA 6.85 3.83 </line>
<line>THR CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 387</line>
<line>LEU CA 374</line>
<line>VAL CA 286</line>
<line>ILE CA 286</line>
<line>ASN CA 178</line>
<line>GLY CA 134</line>
<line>GLU CA 166</line>
<line>LYS CA 209</line>
<line>THR CA 302</line>
<line>VAL CA 373</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DJ2</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DJ2B</entryIDChain>
<sequence>TIYNSEGKKFA</sequence>
<secondary-structure>EE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3602 CA THR B 60 -9.477 53.589 70.366 1.00 59.18 C </line>
<line>ATOM 3609 CA ILE B 61 -9.151 49.781 70.309 1.00 58.16 C </line>
<line>ATOM 3617 CA TYR B 62 -11.094 46.773 71.604 1.00 56.54 C </line>
<line>ATOM 3629 CA ASN B 63 -9.291 43.540 72.557 1.00 59.66 C </line>
<line>ATOM 3637 CA SER B 64 -10.579 40.005 71.896 1.00 61.45 C </line>
<line>ATOM 3643 CA GLU B 65 -13.155 40.402 74.683 1.00 67.00 C </line>
<line>ATOM 3652 CA GLY B 66 -14.326 43.946 74.014 1.00 60.97 C </line>
<line>ATOM 3656 CA LYS B 67 -12.387 46.141 76.442 1.00 59.12 C </line>
<line>ATOM 3665 CA LYS B 68 -12.245 49.762 75.296 1.00 56.60 C </line>
<line>ATOM 3674 CA PHE B 69 -8.632 50.949 75.252 1.00 52.39 C </line>
<line>ATOM 3685 CA ALA B 70 -7.969 54.577 74.374 1.00 54.38 C </line>
</atom-coordinate>
<distance-map>
<line> ALA PHE LYS LYS GLY GLU SER ASN TYR ILE THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.39 5.62 6.83 10.04 11.39 14.35 13.71 10.29 7.11 3.82 </line>
<line>ILE CA 6.40 5.11 5.87 7.83 8.63 11.10 10.01 6.63 3.81 </line>
<line>TYR CA 8.85 6.07 4.89 5.05 4.92 7.37 6.79 3.82 </line>
<line>ASN CA 11.26 7.91 7.41 5.61 5.26 5.41 3.82 </line>
<line>SER CA 15.01 11.61 10.47 7.85 5.84 3.82 </line>
<line>GLU CA 15.10 11.49 9.42 6.05 3.79 </line>
<line>GLY CA 12.39 9.11 6.31 3.80 </line>
<line>LYS CA 9.74 6.22 3.80 </line>
<line>LYS CA 6.51 3.80 </line>
<line>PHE CA 3.79 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>THR CA 400</line>
<line>ILE CA 381</line>
<line>TYR CA 294</line>
<line>ASN CA 281</line>
<line>SER CA 219</line>
<line>GLU CA 155</line>
<line>GLY CA 182</line>
<line>LYS CA 212</line>
<line>LYS CA 252</line>
<line>PHE CA 335</line>
<line>ALA CA 374</line>
</n14>
</entryChain>
<parallel>
<x>2.2360000610351562</x>
<y>-25.604999542236328</y>
<z>-90.20600128173828</z>
</parallel>
<rotation>
<x>0.023000000044703484</x>
<y>0.9589999914169312</y>
<z>-0.2840000092983246</z>
<x>0.9369999766349792</x>
<y>-0.11900000274181366</y>
<z>-0.3269999921321869</z>
<x>-0.34700000286102295</x>
<y>-0.2590000033378601</y>
<z>-0.9010000228881836</z>
</rotation>
<rmsd>0.7725399732589722</rmsd>
<dmax>1.564316987991333</dmax>
</indel>