NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DKEC-2RI4J
confEVID 1DKEC-2RI4J
pdbIDA 1DKE
pdbIDB 2RI4
pdbChainA C
pdbChainB J
identity 0.390399992465973
indelSize 3
alignment <alignment>
<seq1>VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPT----TKTYFPHFDLS--HGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq1>
<seq2>-LTAEEKAAVTGFWGKV--KVDEVGAEALGRLLVVYPWTQRFFEHFGDLSSADAVMNNAKVKAHGKKVLDSFSNGMKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVVVLARHHGSEFTPLLQAEFQKVVAGVANALAHRYH</seq2>
<ss_1> HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHH ----GGGG -- HHHHHHHHHHHHHHHHHHH GGGHHHH HHHHHHIIIII HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH </ss_1>
<ss_2>- HHHHHHHH -- HHHHHHHHHHHHHHH GGG HHHHH HHHHHHHHHHHHHHHHHHH HHHHHHHHH HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DKE</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1DKEC</entryIDChain>
<sequence>LSFPT----TKTYF</sequence>
<secondary-structure>HH ----GGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 2438 CA LEU C 34 3.965 -13.181 3.544 1.00 26.19 C </line>
<line>ATOM 2446 CA SER C 35 7.214 -11.699 4.950 1.00 21.43 C </line>
<line>ATOM 2452 CA PHE C 36 5.617 -10.377 8.205 1.00 20.68 C </line>
<line>ATOM 2463 CA PRO C 37 2.592 -12.608 9.233 1.00 21.38 C </line>
<line>ATOM 2470 CA THR C 38 1.741 -10.507 12.282 1.00 18.66 C </line>
<line>ATOM 2477 CA THR C 39 0.366 -7.792 9.976 1.00 17.78 C </line>
<line>ATOM 2484 CA LYS C 40 -2.541 -10.184 9.125 1.00 19.93 C </line>
<line>ATOM 2493 CA THR C 41 -4.200 -9.562 12.506 1.00 19.25 C </line>
<line>ATOM 2500 CA TYR C 42 -5.594 -6.357 11.007 1.00 22.92 C </line>
<line>ATOM 2512 CA PHE C 43 -7.497 -8.169 8.187 1.00 26.08 C </line>
</atom-coordinate>
<distance-map>
<line> PHE TYR THR LYS THR THR PRO PHE SER LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 13.34 13.92 12.65 9.08 9.13 9.40 5.88 5.68 3.84 </line>
<line>SER CA 15.47 15.14 13.85 10.72 9.35 9.23 6.37 3.86 </line>
<line>PHE CA 13.30 12.24 10.75 8.21 6.11 5.63 3.90 </line>
<line>PRO CA 11.07 10.45 8.13 5.68 5.36 3.80 </line>
<line>THR CA 10.37 8.52 6.02 5.33 3.82 </line>
<line>THR CA 8.07 6.22 5.51 3.86 </line>
<line>LYS CA 5.43 5.24 3.82 </line>
<line>THR CA 5.61 3.80 </line>
<line>TYR CA 3.85 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>LEU CA 246</line>
<line>SER CA 216</line>
<line>PHE CA 234</line>
<line>PRO CA 212</line>
<line>THR CA 208</line>
<line>THR CA 291</line>
<line>LYS CA 283</line>
<line>THR CA 224</line>
<line>TYR CA 286</line>
<line>PHE CA 270</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2RI4</pdbID>
<pdbChain>J</pdbChain>
<entryIDChain>2RI4J</entryIDChain>
<sequence>VVYPWTQRFFEHFG</sequence>
<secondary-structure>HH GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 5542 CA VAL J 33 32.752 -36.907 46.369 1.00 30.76 C </line>
<line>ATOM 5549 CA VAL J 34 31.778 -34.450 43.619 1.00 31.55 C </line>
<line>ATOM 5556 CA TYR J 35 30.229 -31.871 45.975 1.00 34.74 C </line>
<line>ATOM 5568 CA PRO J 36 32.479 -32.268 49.045 1.00 35.92 C </line>
<line>ATOM 5575 CA TRP J 37 30.695 -29.671 51.244 1.00 35.63 C </line>
<line>ATOM 5589 CA THR J 38 27.987 -32.284 51.487 1.00 37.89 C </line>
<line>ATOM 5596 CA GLN J 39 30.363 -34.308 53.561 1.00 40.03 C </line>
<line>ATOM 5605 CA ARG J 40 29.470 -31.796 56.321 1.00 41.92 C </line>
<line>ATOM 5616 CA PHE J 41 25.889 -32.815 57.048 1.00 44.15 C </line>
<line>ATOM 5627 CA PHE J 42 26.904 -36.468 56.954 1.00 45.12 C </line>
<line>ATOM 5638 CA GLU J 43 30.088 -36.496 59.087 1.00 48.24 C </line>
<line>ATOM 5647 CA HIS J 44 28.285 -38.748 61.580 1.00 49.25 C </line>
<line>ATOM 5657 CA PHE J 45 28.141 -41.452 58.926 1.00 47.74 C </line>
<line>ATOM 5668 CA GLY J 46 31.788 -42.138 59.704 1.00 46.57 C </line>
</atom-coordinate>
<distance-map>
<line> GLY PHE HIS GLU PHE PHE ARG GLN THR TRP PRO TYR VAL VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 14.36 14.13 15.96 13.00 12.10 13.34 11.66 8.01 8.38 8.96 5.36 5.65 3.81 </line>
<line>VAL CA 17.83 17.22 18.80 15.69 14.34 14.75 13.18 10.04 9.00 9.06 5.89 3.82 </line>
<line>TYR CA 17.21 16.24 17.16 13.90 12.36 11.93 10.37 7.97 5.96 5.73 3.83 </line>
<line>PRO CA 14.54 14.17 14.72 11.16 10.55 10.38 7.89 5.39 5.11 3.84 </line>
<line>TRP CA 15.11 14.29 13.97 10.41 9.65 8.17 5.64 5.19 3.77 </line>
<line>THR CA 13.38 11.81 11.99 8.94 6.97 5.97 5.08 3.75 </line>
<line>GLN CA 10.05 9.21 9.40 5.95 5.30 5.87 3.84 </line>
<line>ARG CA 11.13 10.09 8.80 5.49 5.37 3.79 </line>
<line>PHE CA 11.35 9.12 7.84 5.94 3.79 </line>
<line>PHE CA 7.97 5.50 5.34 3.83 </line>
<line>GLU CA 5.92 5.33 3.81 </line>
<line>HIS CA 5.22 3.79 </line>
<line>PHE CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 299</line>
<line>VAL CA 264</line>
<line>TYR CA 279</line>
<line>PRO CA 259</line>
<line>TRP CA 255</line>
<line>THR CA 350</line>
<line>GLN CA 315</line>
<line>ARG CA 255</line>
<line>PHE CA 303</line>
<line>PHE CA 322</line>
<line>GLU CA 225</line>
<line>HIS CA 184</line>
<line>PHE CA 235</line>
<line>GLY CA 206</line>
</n14>
</entryChain>
<parallel>
<x>-28.55699920654297</x>
<y>23.871000289916992</y>
<z>-43.00699996948242</z>
</parallel>
<rotation>
<x>-0.13099999725818634</x>
<y>-0.984000027179718</y>
<z>-0.12300000339746475</z>
<x>0.5799999833106995</x>
<y>-0.1770000010728836</y>
<z>0.7950000166893005</z>
<x>-0.8040000200271606</x>
<y>0.032999999821186066</y>
<z>0.593999981880188</z>
</rotation>
<rmsd>3.1044020652770996</rmsd>
<dmax>4.553676128387451</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1DKE</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1DKEC</entryIDChain>
<sequence>HFDLS--HGSAQ</sequence>
<secondary-structure> -- HH</secondary-structure>
<atom-coordinate>
<line>ATOM 2530 CA HIS C 45 -12.084 -11.450 7.802 1.00 45.62 C </line>
<line>ATOM 2540 CA PHE C 46 -10.209 -10.770 4.522 1.00 46.04 C </line>
<line>ATOM 2551 CA ASP C 47 -9.726 -13.567 1.959 1.00 45.99 C </line>
<line>ATOM 2559 CA LEU C 48 -5.915 -13.452 2.132 1.00 47.15 C </line>
<line>ATOM 2567 CA SER C 49 -5.180 -15.737 -0.796 1.00 48.71 C </line>
<line>ATOM 2573 CA HIS C 50 -2.832 -15.157 -3.733 1.00 47.05 C </line>
<line>ATOM 2583 CA GLY C 51 -4.919 -13.050 -6.122 1.00 43.38 C </line>
<line>ATOM 2587 CA SER C 52 -7.685 -12.460 -3.570 1.00 41.47 C </line>
<line>ATOM 2593 CA ALA C 53 -10.207 -9.946 -4.990 1.00 40.25 C </line>
<line>ATOM 2598 CA GLN C 54 -10.339 -8.289 -1.579 1.00 36.47 C </line>
</atom-coordinate>
<distance-map>
<line> GLN ALA SER GLY HIS SER LEU ASP PHE HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 10.05 13.02 12.23 15.74 15.24 11.83 8.61 6.65 3.84 </line>
<line>PHE CA 6.59 9.55 8.64 12.10 11.91 8.85 5.60 3.82 </line>
<line>ASP CA 6.38 7.85 6.00 9.42 9.08 5.74 3.82 </line>
<line>LEU CA 7.75 9.02 6.05 8.32 6.84 3.79 </line>
<line>SER CA 9.09 8.74 4.97 5.97 3.80 </line>
<line>HIS CA 10.40 9.12 5.55 3.81 </line>
<line>GLY CA 8.53 6.24 3.81 </line>
<line>SER CA 5.33 3.83 </line>
<line>ALA CA 3.79 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>HIS CA 148</line>
<line>PHE CA 207</line>
<line>ASP CA 188</line>
<line>LEU CA 242</line>
<line>SER CA 201</line>
<line>HIS CA 195</line>
<line>GLY CA 191</line>
<line>SER CA 204</line>
<line>ALA CA 184</line>
<line>GLN CA 222</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2RI4</pdbID>
<pdbChain>J</pdbChain>
<entryIDChain>2RI4J</entryIDChain>
<sequence>LSSADAVMNNAK</sequence>
<secondary-structure> HHHHH HH</secondary-structure>
<atom-coordinate>
<line>ATOM 5680 CA LEU J 48 34.449 -40.043 54.479 1.00 45.07 C </line>
<line>ATOM 5688 CA SER J 49 38.256 -39.694 53.992 1.00 45.88 C </line>
<line>ATOM 5694 CA SER J 50 38.658 -40.286 50.224 1.00 46.28 C </line>
<line>ATOM 5700 CA ALA J 51 36.620 -40.934 47.056 1.00 47.56 C </line>
<line>ATOM 5705 CA ASP J 52 37.489 -44.624 47.158 1.00 49.12 C </line>
<line>ATOM 5713 CA ALA J 53 36.523 -44.462 50.855 1.00 50.00 C </line>
<line>ATOM 5718 CA VAL J 54 32.997 -43.000 50.465 1.00 50.75 C </line>
<line>ATOM 5725 CA MET J 55 31.848 -45.395 47.735 1.00 50.79 C </line>
<line>ATOM 5733 CA ASN J 56 32.715 -48.200 50.173 1.00 50.15 C </line>
<line>ATOM 5741 CA ASN J 57 30.987 -46.766 53.222 1.00 47.84 C </line>
<line>ATOM 5749 CA ALA J 58 28.285 -48.752 54.979 1.00 49.12 C </line>
<line>ATOM 5754 CA LYS J 59 26.141 -45.729 55.858 1.00 49.36 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ALA ASN ASN MET VAL ALA ASP ALA SER SER LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 10.16 10.68 7.67 9.39 8.99 5.19 6.08 9.16 7.79 5.99 3.85 </line>
<line>SER CA 13.66 13.51 10.17 10.85 10.62 7.14 5.96 8.46 7.23 3.84 </line>
<line>SER CA 14.77 14.21 10.48 9.90 8.87 6.28 4.73 5.44 3.82 </line>
<line>ALA CA 14.50 13.91 10.19 8.82 6.57 5.39 5.19 3.79 </line>
<line>ASP CA 14.34 12.76 9.15 6.68 5.72 5.81 3.82 </line>
<line>ALA CA 11.59 10.16 6.45 5.38 5.70 3.84 </line>
<line>VAL CA 9.14 8.70 5.08 5.22 3.81 </line>
<line>MET CA 9.93 8.74 5.72 3.82 </line>
<line>ASN CA 9.04 6.56 3.79 </line>
<line>ASN CA 5.61 3.79 </line>
<line>ALA CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>LEU CA 259</line>
<line>SER CA 189</line>
<line>SER CA 173</line>
<line>ALA CA 214</line>
<line>ASP CA 170</line>
<line>ALA CA 205</line>
<line>VAL CA 288</line>
<line>MET CA 293</line>
<line>ASN CA 229</line>
<line>ASN CA 255</line>
<line>ALA CA 221</line>
<line>LYS CA 264</line>
</n14>
</entryChain>
<parallel>
<x>-42.44599914550781</x>
<y>30.03700065612793</y>
<z>-50.23099899291992</z>
</parallel>
<rotation>
<x>-0.5019999742507935</x>
<y>-0.781000018119812</y>
<z>0.3709999918937683</z>
<x>0.12800000607967377</x>
<y>0.3569999933242798</y>
<z>0.925000011920929</z>
<x>-0.8550000190734863</x>
<y>0.5120000243186951</y>
<z>-0.07900000363588333</z>
</rotation>
<rmsd>3.1030209064483643</rmsd>
<dmax>5.887290000915527</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2RI4</pdbID>
<pdbChain>J</pdbChain>
<entryIDChain>2RI4J</entryIDChain>
<sequence>FWGKV--KVDEV</sequence>
<secondary-structure>HH -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 5395 CA PHE J 14 11.632 -47.057 33.183 1.00 45.45 C </line>
<line>ATOM 5406 CA TRP J 15 11.671 -46.420 36.931 1.00 45.13 C </line>
<line>ATOM 5420 CA GLY J 16 10.995 -50.169 37.198 1.00 45.28 C </line>
<line>ATOM 5424 CA LYS J 17 14.263 -51.091 35.417 1.00 44.03 C </line>
<line>ATOM 5433 CA VAL J 18 16.259 -48.996 37.913 1.00 43.40 C </line>
<line>ATOM 5440 CA LYS J 19 18.114 -51.020 40.474 1.00 44.32 C </line>
<line>ATOM 5449 CA VAL J 20 17.179 -48.418 43.099 1.00 43.50 C </line>
<line>ATOM 5456 CA ASP J 21 19.837 -49.618 45.586 1.00 42.04 C </line>
<line>ATOM 5464 CA GLU J 22 22.888 -49.640 43.284 1.00 39.73 C </line>
<line>ATOM 5473 CA VAL J 23 21.693 -46.279 42.030 1.00 37.24 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLU ASP VAL LYS VAL LYS GLY TRP PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 13.42 15.34 15.09 11.44 10.53 6.90 5.31 5.12 3.80 </line>
<line>TRP CA 11.25 13.29 12.32 8.51 8.67 5.35 5.55 3.82 </line>
<line>GLY CA 12.37 13.37 12.20 8.73 7.88 5.44 3.83 </line>
<line>LYS CA 11.05 11.76 11.69 8.64 6.36 3.82 </line>
<line>VAL CA 7.34 8.56 8.49 5.30 3.75 </line>
<line>LYS CA 6.14 5.71 5.57 3.81 </line>
<line>VAL CA 5.11 5.84 3.83 </line>
<line>ASP CA 5.22 3.82 </line>
<line>GLU CA 3.78 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>PHE CA 307</line>
<line>TRP CA 353</line>
<line>GLY CA 245</line>
<line>LYS CA 235</line>
<line>VAL CA 321</line>
<line>LYS CA 276</line>
<line>VAL CA 327</line>
<line>ASP CA 293</line>
<line>GLU CA 309</line>
<line>VAL CA 372</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DKE</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1DKEC</entryIDChain>
<sequence>AWGKVGAHAGEY</sequence>
<secondary-structure>HHHHHGGGHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2280 CA ALA C 13 9.232 7.951 -9.436 1.00 32.68 C </line>
<line>ATOM 2285 CA TRP C 14 5.520 7.729 -8.451 1.00 31.41 C </line>
<line>ATOM 2299 CA GLY C 15 4.624 9.325 -11.791 1.00 30.44 C </line>
<line>ATOM 2303 CA LYS C 16 6.265 6.333 -13.599 1.00 32.59 C </line>
<line>ATOM 2312 CA VAL C 17 4.108 4.029 -11.481 1.00 35.36 C </line>
<line>ATOM 2319 CA GLY C 18 1.041 5.540 -13.155 1.00 36.60 C </line>
<line>ATOM 2323 CA ALA C 19 -1.913 3.216 -13.822 1.00 39.86 C </line>
<line>ATOM 2328 CA HIS C 20 -0.112 0.192 -12.329 1.00 41.37 C </line>
<line>ATOM 2338 CA ALA C 21 -0.542 1.910 -8.913 1.00 41.71 C </line>
<line>ATOM 2343 CA GLY C 22 -3.343 -0.474 -7.953 1.00 37.77 C </line>
<line>ATOM 2347 CA GLU C 23 -1.385 -3.573 -8.988 1.00 33.93 C </line>
<line>ATOM 2356 CA TYR C 24 1.739 -2.382 -7.113 1.00 25.77 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 12.97 15.68 15.21 11.50 12.49 12.88 9.31 6.77 5.36 5.35 3.85 </line>
<line>TRP CA 10.88 13.26 12.09 8.42 10.18 10.22 6.85 4.99 5.39 3.81 </line>
<line>GLY CA 12.93 14.50 13.20 9.48 10.30 9.17 5.39 5.33 3.86 </line>
<line>LYS CA 11.77 13.34 13.06 9.37 8.94 8.75 5.30 3.80 </line>
<line>VAL CA 8.11 9.70 9.39 5.72 5.77 6.51 3.81 </line>
<line>GLY CA 9.99 10.31 9.08 5.80 5.53 3.82 </line>
<line>ALA CA 9.47 8.35 7.08 5.26 3.82 </line>
<line>HIS CA 6.10 5.19 5.48 3.85 </line>
<line>ALA CA 5.18 5.55 3.80 </line>
<line>GLY CA 5.49 3.81 </line>
<line>GLU CA 3.83 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 356</line>
<line>TRP CA 395</line>
<line>GLY CA 265</line>
<line>LYS CA 252</line>
<line>VAL CA 318</line>
<line>GLY CA 226</line>
<line>ALA CA 190</line>
<line>HIS CA 247</line>
<line>ALA CA 311</line>
<line>GLY CA 282</line>
<line>GLU CA 306</line>
<line>TYR CA 367</line>
</n14>
</entryChain>
<parallel>
<x>11.774999618530273</x>
<y>-53.722999572753906</y>
<z>49.21900177001953</z>
</parallel>
<rotation>
<x>0.017000000923871994</x>
<y>0.35899999737739563</y>
<z>-0.9330000281333923</z>
<x>-0.9950000047683716</x>
<y>-0.08799999952316284</y>
<z>-0.052000001072883606</z>
<x>-0.10100000351667404</x>
<y>0.9290000200271606</y>
<z>0.35499998927116394</z>
</rotation>
<rmsd>0.9768159985542297</rmsd>
<dmax>1.7986270189285278</dmax>
</indel>