NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DKEC-2ZLWD
confEVID 1DKEC-2ZLWD
pdbIDA 1DKE
pdbIDB 2ZLW
pdbChainA C
pdbChainB D
identity 0.401399999856949
indelSize 1
alignment <alignment>
<seq1>-VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFD------LSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR</seq1>
<seq2>VQLSGEEKAAVLALWDKVN--EEEVGGEALGRLLVVYPWTQRFFDSFGDLSNPGAVMGNPKVKAHGKKVLHSFGEGVHHLDNLKGTFAALSELHCDKLHVDPENFRLLGNVLVVVLARHFGKDFTPELQASYQKVVAGVANALAHKYH</seq2>
<ss_1>- HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHH GGGG ------ HHHHHHHHHHHHHHHHHHH GGGHHHH HHHHHHIIIII HHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHH --HHHHHHHHHHHHHHH GGG GGG HHHHHHHHHHHHHHHHHGGG HHHHHHHHIIIII HHHHHHHHHHHHHHHHHGGG HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2ZLW</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2ZLWD</entryIDChain>
<sequence>WDKVN--EEEVG</sequence>
<secondary-structure> --HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3364 CA TRP D 15 -34.693 14.376 22.932 1.00 9.39 C </line>
<line>ATOM 3378 CA ASP D 16 -38.152 15.870 23.251 1.00 14.74 C </line>
<line>ATOM 3386 CA LYS D 17 -39.432 12.308 23.248 1.00 11.42 C </line>
<line>ATOM 3395 CA VAL D 18 -36.675 11.004 25.537 1.00 8.25 C </line>
<line>ATOM 3402 CA ASN D 19 -38.278 10.039 28.858 1.00 20.92 C </line>
<line>ATOM 3410 CA GLU D 20 -35.552 10.733 31.453 1.00 19.36 C </line>
<line>ATOM 3419 CA GLU D 21 -36.596 8.388 34.268 1.00 17.54 C </line>
<line>ATOM 3428 CA GLU D 22 -37.459 5.552 31.900 1.00 16.80 C </line>
<line>ATOM 3437 CA VAL D 23 -34.329 5.859 29.756 1.00 11.40 C </line>
<line>ATOM 3444 CA GLY D 24 -32.072 6.515 32.744 1.00 15.19 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL GLU GLU GLU ASN VAL LYS ASP TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.84 10.92 12.88 12.96 9.31 8.17 4.70 5.18 3.78 </line>
<line>ASP CA 14.65 12.54 13.48 13.41 10.02 8.09 5.58 3.79 </line>
<line>LYS CA 13.34 10.49 11.15 12.04 9.21 6.16 3.81 </line>
<line>VAL CA 9.66 7.06 8.42 9.11 6.03 3.81 </line>
<line>ASN CA 8.13 5.82 5.48 5.90 3.83 </line>
<line>GLU CA 5.62 5.30 5.54 3.81 </line>
<line>GLU CA 5.13 5.65 3.79 </line>
<line>GLU CA 5.54 3.81 </line>
<line>VAL CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 345</line>
<line>ASP CA 234</line>
<line>LYS CA 240</line>
<line>VAL CA 335</line>
<line>ASN CA 287</line>
<line>GLU CA 319</line>
<line>GLU CA 288</line>
<line>GLU CA 310</line>
<line>VAL CA 374</line>
<line>GLY CA 398</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DKE</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1DKEC</entryIDChain>
<sequence>WGKVGAHAGEYG</sequence>
<secondary-structure>HHHHGGGHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2285 CA TRP C 14 5.520 7.729 -8.451 1.00 31.41 C </line>
<line>ATOM 2299 CA GLY C 15 4.624 9.325 -11.791 1.00 30.44 C </line>
<line>ATOM 2303 CA LYS C 16 6.265 6.333 -13.599 1.00 32.59 C </line>
<line>ATOM 2312 CA VAL C 17 4.108 4.029 -11.481 1.00 35.36 C </line>
<line>ATOM 2319 CA GLY C 18 1.041 5.540 -13.155 1.00 36.60 C </line>
<line>ATOM 2323 CA ALA C 19 -1.913 3.216 -13.822 1.00 39.86 C </line>
<line>ATOM 2328 CA HIS C 20 -0.112 0.192 -12.329 1.00 41.37 C </line>
<line>ATOM 2338 CA ALA C 21 -0.542 1.910 -8.913 1.00 41.71 C </line>
<line>ATOM 2343 CA GLY C 22 -3.343 -0.474 -7.953 1.00 37.77 C </line>
<line>ATOM 2347 CA GLU C 23 -1.385 -3.573 -8.988 1.00 33.93 C </line>
<line>ATOM 2356 CA TYR C 24 1.739 -2.382 -7.113 1.00 25.77 C </line>
<line>ATOM 2368 CA GLY C 25 -0.356 -1.771 -3.997 1.00 26.50 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU GLY ALA HIS ALA GLY VAL LYS GLY TRP </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TRP CA 12.03 10.88 13.26 12.09 8.42 10.18 10.22 6.85 4.99 5.39 3.81 </line>
<line>GLY CA 14.45 12.93 14.50 13.20 9.48 10.30 9.17 5.39 5.33 3.86 </line>
<line>LYS CA 14.20 11.77 13.34 13.06 9.37 8.94 8.75 5.30 3.80 </line>
<line>VAL CA 10.47 8.11 9.70 9.39 5.72 5.77 6.51 3.81 </line>
<line>GLY CA 11.80 9.99 10.31 9.08 5.80 5.53 3.82 </line>
<line>ALA CA 11.13 9.47 8.35 7.08 5.26 3.82 </line>
<line>HIS CA 8.56 6.10 5.19 5.48 3.85 </line>
<line>ALA CA 6.14 5.18 5.55 3.80 </line>
<line>GLY CA 5.12 5.49 3.81 </line>
<line>GLU CA 5.41 3.83 </line>
<line>TYR CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>TRP CA 395</line>
<line>GLY CA 265</line>
<line>LYS CA 252</line>
<line>VAL CA 318</line>
<line>GLY CA 226</line>
<line>ALA CA 190</line>
<line>HIS CA 247</line>
<line>ALA CA 311</line>
<line>GLY CA 282</line>
<line>GLU CA 306</line>
<line>TYR CA 367</line>
<line>GLY CA 397</line>
</n14>
</entryChain>
<parallel>
<x>-39.14099884033203</x>
<y>7.181000232696533</y>
<z>38.22200012207031</z>
</parallel>
<rotation>
<x>0.24300000071525574</x>
<y>-0.22699999809265137</y>
<z>-0.9430000185966492</z>
<x>-0.03099999949336052</x>
<y>0.9700000286102295</y>
<z>-0.2409999966621399</z>
<x>0.9700000286102295</x>
<y>0.08799999952316284</y>
<z>0.2280000001192093</z>
</rotation>
<rmsd>1.5758329629898071</rmsd>
<dmax>3.3447020053863525</dmax>
</indel>