NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1G9OA-2VPHB
confEVID 1G9OA-2VPHB
pdbIDA 1G9O
pdbIDB 2VPH
pdbChainA A
pdbChainB B
identity 0.266000002622604
indelSize 3
alignment <alignment>
<seq1>RMLPRLCCLEKGPNGYGFHLHGEKGKL-GQYIRLVEPGSPAEKA--GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQL</seq1>
<seq2>MDNLVLIRMKPDNGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKAS--ELMLLVRPNAVESTV</seq2>
<ss_1> EEEEE EEEEEEEEE -EEE EEE -- EEEEE EEE HHHHHHHHH EEEEEEEE </ss_1>
<ss_2> EEEEE EEEEEEE EEE HHHH EEEEE EEE HHHHHHHHH -- EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1G9O</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1G9OA</entryIDChain>
<sequence>EKGKL-GQYIR</sequence>
<secondary-structure>E -EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 168 CA GLU A 31 20.854 36.375 2.802 1.00 21.43 C </line>
<line>ATOM 177 CA LYS A 32 20.797 39.697 0.991 1.00 26.34 C </line>
<line>ATOM 186 CA GLY A 33 20.658 42.575 3.459 1.00 27.86 C </line>
<line>ATOM 190 CA LYS A 34 20.890 40.263 6.474 1.00 28.10 C </line>
<line>ATOM 199 CA LEU A 35 23.520 39.359 9.084 1.00 25.90 C </line>
<line>ATOM 207 CA GLY A 36 22.858 35.689 9.791 1.00 18.46 C </line>
<line>ATOM 211 CA GLN A 37 22.721 32.273 8.198 1.00 12.15 C </line>
<line>ATOM 220 CA TYR A 38 19.676 30.717 6.526 1.00 10.03 C </line>
<line>ATOM 232 CA ILE A 39 18.856 27.239 5.280 1.00 9.85 C </line>
<line>ATOM 242 CA ARG A 40 19.477 27.179 1.543 1.00 10.33 C </line>
</atom-coordinate>
<distance-map>
<line> ARG ILE TYR GLN GLY LEU LYS GLY LYS GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 9.38 9.67 6.88 7.03 7.30 7.45 5.35 6.24 3.78 </line>
<line>LYS CA 12.60 13.32 10.61 10.52 9.89 8.55 5.51 3.79 </line>
<line>GLY CA 15.56 15.55 12.29 11.53 9.61 7.08 3.81 </line>
<line>LYS CA 14.05 13.24 9.62 8.38 5.98 3.81 </line>
<line>LEU CA 14.89 13.53 9.80 7.19 3.80 </line>
<line>GLY CA 12.32 10.38 6.75 3.77 </line>
<line>GLN CA 8.99 6.99 3.81 </line>
<line>TYR CA 6.11 3.78 </line>
<line>ILE CA 3.79 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLU CA 214</line>
<line>LYS CA 125</line>
<line>GLY CA 99</line>
<line>LYS CA 182</line>
<line>LEU CA 206</line>
<line>GLY CA 298</line>
<line>GLN CA 361</line>
<line>TYR CA 377</line>
<line>ILE CA 380</line>
<line>ARG CA 263</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2VPH</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2VPHB</entryIDChain>
<sequence>GYDQKMPVIVS</sequence>
<secondary-structure>E </secondary-structure>
<atom-coordinate>
<line>ATOM 905 CA GLY B 535 18.383 38.571 -0.277 1.00 29.98 C </line>
<line>ATOM 909 CA TYR B 536 20.578 41.556 -1.069 1.00 28.44 C </line>
<line>ATOM 921 CA ASP B 537 22.956 41.010 1.866 1.00 33.27 C </line>
<line>ATOM 929 CA GLN B 538 23.477 37.365 0.769 1.00 36.15 C </line>
<line>ATOM 938 CA LYS B 539 24.152 38.354 -2.883 1.00 38.40 C </line>
<line>ATOM 943 CA MET B 540 21.575 35.704 -3.803 1.00 34.95 C </line>
<line>ATOM 951 CA PRO B 541 18.072 35.924 -5.261 1.00 36.61 C </line>
<line>ATOM 958 CA VAL B 542 15.139 35.398 -2.892 1.00 29.28 C </line>
<line>ATOM 965 CA ILE B 543 14.109 31.789 -3.546 1.00 28.43 C </line>
<line>ATOM 973 CA VAL B 544 11.316 29.690 -2.050 1.00 28.57 C </line>
<line>ATOM 980 CA SER B 545 13.254 26.815 -0.397 1.00 29.23 C </line>
</atom-coordinate>
<distance-map>
<line> SER VAL ILE VAL PRO MET LYS GLN ASP TYR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 12.83 11.49 8.66 5.24 5.65 5.55 6.33 5.34 5.61 3.79 </line>
<line>TYR CA 16.47 15.08 11.97 8.42 7.45 6.54 5.13 5.42 3.82 </line>
<line>ASP CA 17.34 16.70 13.88 10.73 10.03 7.89 5.57 3.84 </line>
<line>GLN CA 14.74 14.65 11.72 9.32 8.23 5.22 3.84 </line>
<line>LYS CA 16.07 15.51 12.02 9.49 6.97 3.81 </line>
<line>MET CA 12.64 12.02 8.43 6.51 3.80 </line>
<line>PRO CA 11.39 9.74 5.98 3.81 </line>
<line>VAL CA 9.13 6.92 3.81 </line>
<line>ILE CA 5.95 3.80 </line>
<line>VAL CA 3.84 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>GLY CA 267</line>
<line>TYR CA 217</line>
<line>ASP CA 163</line>
<line>GLN CA 166</line>
<line>LYS CA 155</line>
<line>MET CA 204</line>
<line>PRO CA 289</line>
<line>VAL CA 366</line>
<line>ILE CA 349</line>
<line>VAL CA 377</line>
<line>SER CA 273</line>
</n14>
</entryChain>
<parallel>
<x>1.8890000581741333</x>
<y>-0.37700000405311584</y>
<z>7.577000141143799</z>
</parallel>
<rotation>
<x>0.01899999938905239</x>
<y>0.8930000066757202</y>
<z>0.44999998807907104</z>
<x>0.5299999713897705</x>
<y>0.37299999594688416</y>
<z>-0.7620000243186951</z>
<x>-0.8479999899864197</x>
<y>0.2529999911785126</y>
<z>-0.4659999907016754</z>
</rotation>
<rmsd>2.152190923690796</rmsd>
<dmax>3.0942790508270264</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1G9O</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1G9OA</entryIDChain>
<sequence>PAEKA--GLLAG</sequence>
<secondary-structure> -- </secondary-structure>
<atom-coordinate>
<line>ATOM 294 CA PRO A 47 18.032 14.075 9.460 1.00 9.22 C </line>
<line>ATOM 301 CA ALA A 48 17.275 17.755 8.770 1.00 8.62 C </line>
<line>ATOM 306 CA GLU A 49 14.055 16.813 6.988 1.00 9.74 C </line>
<line>ATOM 319 CA LYS A 50 13.118 14.328 9.750 1.00 10.32 C </line>
<line>ATOM 328 CA ALA A 51 13.567 17.070 12.356 1.00 10.74 C </line>
<line>ATOM 333 CA GLY A 52 11.338 19.497 10.459 1.00 11.33 C </line>
<line>ATOM 337 CA LEU A 53 13.885 21.928 9.059 1.00 10.03 C </line>
<line>ATOM 349 CA LEU A 54 12.735 23.968 6.042 1.00 10.21 C </line>
<line>ATOM 357 CA ALA A 55 14.490 25.926 3.298 1.00 9.52 C </line>
<line>ATOM 362 CA GLY A 56 14.350 29.612 4.191 1.00 9.38 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ALA LEU LEU GLY ALA LYS GLU ALA PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 16.81 13.82 11.73 8.89 8.67 6.11 4.93 5.42 3.82 </line>
<line>ALA CA 13.04 10.22 8.16 5.38 6.41 5.20 5.48 3.80 </line>
<line>GLU CA 13.10 9.84 7.34 5.52 5.16 5.40 3.83 </line>
<line>LYS CA 16.31 13.34 10.34 7.67 5.51 3.81 </line>
<line>ALA CA 14.99 12.70 9.39 5.88 3.80 </line>
<line>GLY CA 12.27 10.13 6.44 3.79 </line>
<line>LEU CA 9.11 7.04 3.82 </line>
<line>LEU CA 6.16 3.80 </line>
<line>ALA CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>PRO CA 265</line>
<line>ALA CA 341</line>
<line>GLU CA 266</line>
<line>LYS CA 224</line>
<line>ALA CA 266</line>
<line>GLY CA 272</line>
<line>LEU CA 343</line>
<line>LEU CA 320</line>
<line>ALA CA 298</line>
<line>GLY CA 300</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2VPH</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2VPHB</entryIDChain>
<sequence>PADLCVPRLNEG</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1027 CA PRO B 552 -1.705 27.920 2.181 1.00 34.96 C </line>
<line>ATOM 1034 CA ALA B 553 1.324 28.034 -0.140 1.00 29.05 C </line>
<line>ATOM 1039 CA ASP B 554 0.837 24.300 -0.901 1.00 32.62 C </line>
<line>ATOM 1047 CA LEU B 555 -2.920 24.553 -1.602 1.00 33.45 C </line>
<line>ATOM 1055 CA CYS B 556 -3.191 27.879 -3.471 1.00 36.77 C </line>
<line>ATOM 1061 CA VAL B 557 -3.803 28.277 -7.243 1.00 39.40 C </line>
<line>ATOM 1066 CA PRO B 558 -1.419 29.030 -8.888 1.00 37.92 C </line>
<line>ATOM 1073 CA ARG B 559 0.722 26.971 -6.503 1.00 29.96 C </line>
<line>ATOM 1084 CA LEU B 560 3.881 28.389 -4.853 1.00 27.90 C </line>
<line>ATOM 1092 CA ASN B 561 6.707 26.029 -5.846 1.00 34.65 C </line>
<line>ATOM 1100 CA GLU B 562 10.182 25.503 -4.443 1.00 33.13 C </line>
<line>ATOM 1109 CA GLY B 563 12.814 27.194 -6.631 1.00 31.24 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLU ASN LEU ARG PRO VAL CYS LEU ASP ALA PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 17.00 13.82 11.78 8.99 9.07 11.13 9.66 5.84 5.21 5.39 3.82 </line>
<line>ALA CA 13.22 10.17 8.10 5.37 6.48 9.22 8.76 5.61 5.68 3.84 </line>
<line>ASP CA 13.59 10.07 7.87 6.45 6.21 9.55 8.81 5.97 3.83 </line>
<line>LEU CA 16.73 13.44 10.62 8.46 6.57 8.68 6.82 3.82 </line>
<line>CYS CA 16.33 13.62 10.35 7.22 5.03 5.81 3.84 </line>
<line>VAL CA 16.66 14.53 10.84 8.05 4.77 2.99 </line>
<line>PRO CA 14.53 12.91 9.18 6.69 3.81 </line>
<line>ARG CA 12.09 9.79 6.09 3.84 </line>
<line>LEU CA 9.19 6.94 3.81 </line>
<line>ASN CA 6.27 3.78 </line>
<line>GLU CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>PRO CA 261</line>
<line>ALA CA 332</line>
<line>ASP CA 270</line>
<line>LEU CA 224</line>
<line>CYS CA 252</line>
<line>VAL CA 217</line>
<line>PRO CA 258</line>
<line>ARG CA 317</line>
<line>LEU CA 391</line>
<line>ASN CA 350</line>
<line>GLU CA 305</line>
<line>GLY CA 280</line>
</n14>
</entryChain>
<parallel>
<x>13.543999671936035</x>
<y>-8.579999923706055</y>
<z>11.751999855041504</z>
</parallel>
<rotation>
<x>0.20100000500679016</x>
<y>0.7409999966621399</y>
<z>-0.640999972820282</z>
<x>0.6029999852180481</x>
<y>0.421999990940094</y>
<z>0.6769999861717224</z>
<x>0.7720000147819519</x>
<y>-0.5230000019073486</y>
<z>-0.3619999885559082</z>
</rotation>
<rmsd>0.5647680163383484</rmsd>
<dmax>0.9274740219116211</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2VPH</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2VPHB</entryIDChain>
<sequence>FIKAS--ELMLL</sequence>
<secondary-structure>HHH -- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1279 CA PHE B 585 7.530 42.464 4.511 1.00 28.59 C </line>
<line>ATOM 1290 CA ILE B 586 5.931 39.031 4.255 1.00 32.86 C </line>
<line>ATOM 1298 CA LYS B 587 4.883 38.868 7.935 1.00 45.38 C </line>
<line>ATOM 1307 CA ALA B 588 3.573 42.444 7.705 1.00 49.90 C </line>
<line>ATOM 1312 CA SER B 589 0.811 41.066 5.433 1.00 51.49 C </line>
<line>ATOM 1318 CA GLU B 596 -3.963 38.470 1.383 1.00 43.00 C </line>
<line>ATOM 1323 CA LEU B 597 -0.327 38.012 0.470 1.00 33.53 C </line>
<line>ATOM 1331 CA MET B 598 0.415 38.993 -3.138 1.00 33.19 C </line>
<line>ATOM 1336 CA LEU B 599 3.713 37.615 -4.475 1.00 33.64 C </line>
<line>ATOM 1344 CA LEU B 600 4.939 38.097 -7.990 1.00 27.60 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU MET LEU GLU SER ALA LYS ILE PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 13.49 10.90 11.01 9.89 12.56 6.92 5.09 5.63 3.80 </line>
<line>ILE CA 12.32 9.12 9.22 7.38 10.32 5.63 5.40 3.83 </line>
<line>LYS CA 15.94 12.53 11.94 9.14 11.02 5.26 3.82 </line>
<line>ALA CA 16.34 13.10 11.81 9.34 10.61 3.83 </line>
<line>SER CA 14.35 10.89 8.83 5.94 6.78 </line>
<line>GLU CA 12.93 9.69 6.32 3.78 </line>
<line>LEU CA 9.97 6.40 3.81 </line>
<line>MET CA 6.69 3.82 </line>
<line>LEU CA 3.75 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>PHE CA 278</line>
<line>ILE CA 344</line>
<line>LYS CA 248</line>
<line>ALA CA 202</line>
<line>SER CA 222</line>
<line>GLU CA 207</line>
<line>LEU CA 308</line>
<line>MET CA 300</line>
<line>LEU CA 392</line>
<line>LEU CA 339</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1G9O</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1G9OA</entryIDChain>
<sequence>RIRAALNAVRLL</sequence>
<secondary-structure>HHH EEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 534 CA ARG A 78 29.398 24.609 15.356 1.00 9.90 C </line>
<line>ATOM 545 CA ILE A 79 27.329 22.099 13.376 1.00 10.05 C </line>
<line>ATOM 553 CA ARG A 80 30.178 20.017 11.973 1.00 10.66 C </line>
<line>ATOM 564 CA ALA A 81 31.655 19.592 15.457 1.00 9.62 C </line>
<line>ATOM 569 CA ALA A 82 28.321 18.248 16.799 1.00 8.79 C </line>
<line>ATOM 574 CA LEU A 83 29.119 14.607 16.052 1.00 9.49 C </line>
<line>ATOM 582 CA ASN A 84 25.892 12.989 17.199 1.00 11.48 C </line>
<line>ATOM 590 CA ALA A 85 23.078 15.507 17.459 1.00 9.94 C </line>
<line>ATOM 595 CA VAL A 86 22.470 19.189 16.941 1.00 10.73 C </line>
<line>ATOM 602 CA ARG A 87 19.707 21.449 18.250 1.00 13.07 C </line>
<line>ATOM 613 CA LEU A 88 18.778 24.281 15.907 1.00 11.48 C </line>
<line>ATOM 621 CA LEU A 89 16.518 27.113 17.047 1.00 10.45 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LEU ARG VAL ALA ASN LEU ALA ALA ARG ILE ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 13.23 10.64 10.60 8.94 11.28 12.28 10.03 6.61 5.50 5.76 3.81 </line>
<line>ILE CA 12.47 9.18 9.07 6.69 8.84 9.98 8.15 5.25 5.42 3.80 </line>
<line>ARG CA 16.21 12.79 12.29 9.21 10.04 9.75 6.86 5.47 3.81 </line>
<line>ALA CA 16.98 13.71 12.41 9.31 9.71 8.94 5.62 3.84 </line>
<line>ALA CA 14.76 11.33 9.30 5.93 5.95 5.81 3.80 </line>
<line>LEU CA 17.78 14.16 11.84 8.12 6.27 3.79 </line>
<line>ASN CA 16.95 13.41 10.53 7.09 3.79 </line>
<line>ALA CA 13.34 9.89 6.88 3.77 </line>
<line>VAL CA 9.91 6.37 3.80 </line>
<line>ARG CA 6.61 3.79 </line>
<line>LEU CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ARG CA 295</line>
<line>ILE CA 355</line>
<line>ARG CA 261</line>
<line>ALA CA 207</line>
<line>ALA CA 243</line>
<line>LEU CA 188</line>
<line>ASN CA 182</line>
<line>ALA CA 242</line>
<line>VAL CA 322</line>
<line>ARG CA 335</line>
<line>LEU CA 415</line>
<line>LEU CA 344</line>
</n14>
</entryChain>
<parallel>
<x>-24.15999984741211</x>
<y>19.829999923706055</y>
<z>-12.131999969482422</z>
</parallel>
<rotation>
<x>0.26499998569488525</x>
<y>0.5260000228881836</y>
<z>0.8080000281333923</z>
<x>0.8610000014305115</x>
<y>0.24799999594688416</y>
<z>-0.4440000057220459</z>
<x>-0.4339999854564667</x>
<y>0.8140000104904175</y>
<z>-0.3869999945163727</z>
</rotation>
<rmsd>0.5937920212745667</rmsd>
<dmax>1.0352280139923096</dmax>
</indel>