NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
3DLJB-3DLJA
confEVID 3DLJB-3DLJA
pdbIDA 3DLJ
pdbIDB 3DLJ
pdbChainA B
pdbChainB A
identity 0.991500020027161
indelSize 3
alignment <alignment>
<seq1>----LLEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQL-QSLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISKPAITYGTRGNSYFMVEVKCRDQDFHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANIDDTQYLAAKRAIRTVF-TEPDMIRDGSTIPIAKMFQEIVHKSVVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLEMAQL</seq1>
<seq2>PPPALLEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLGQSLPIPPVILAELGSDPTKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISKPAITYGTRGNSYFMVEVKCRDQDFHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTKTVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANIDDTQYLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQEIVH--VVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAFFLEMAQL</seq2>
<ss_1>---- HHHHHHHHH HHHHHHHHHHHH EE HHHHHHHHHHHHHHHHHH EEEEE EEE - EEE EEEEEE EEEEEE EEE EEEE HHHHHHHHHHHHHHHH EEEEEEE HHHHHHH EEEE EEEEEEEEEEEEEEEE EE HHHHHHHHGGG HHHHHHHH HHHHHHH HHHHHHHH EEE EEE EEE EEEEEEEEE HHHHHHHHHHHHHHHHH EEEEE EEE GGGHHHHHHHHHH - HHHHHH EEE EEEEEHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHH HHHHHHHHHHHH EE HHHHHHHHHHHHHHHHHH EEEEE EEE EEEEE EEEEEE EEEEEE EEE EEEE HHHHHHHHHHHHHHHH EEEEEEE HHHHHHH EEEE EEEEEEEEEEEEEEEE EE HHHHHHHHGGG HHHHHHHH HHHHHHH HHHHHHHH EEE EEE EEEEEEEEEEEEEEE HHHHHHHHHHHHHHHHH EEEEE EEE EEEE HHHHHHHHHHH HHHHHHHH -- EE EEEEEHHHHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>3DLJ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLJB</entryIDChain>
<sequence>GPQQL-QSLPI</sequence>
<secondary-structure>EEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 4108 CA GLY B 72 38.688 46.735 35.877 1.00 42.05 C </line>
<line>ATOM 4112 CA PRO B 73 36.776 43.741 34.503 1.00 42.83 C </line>
<line>ATOM 4119 CA GLN B 74 37.624 41.394 31.629 1.00 44.12 C </line>
<line>ATOM 4128 CA GLN B 75 34.522 40.515 29.586 1.00 47.55 C </line>
<line>ATOM 4133 CA LEU B 76 34.370 36.750 29.014 1.00 49.83 C </line>
<line>ATOM 4141 CA GLN B 80 30.556 36.645 32.160 1.00 54.66 C </line>
<line>ATOM 4150 CA SER B 81 33.346 38.713 33.713 1.00 49.19 C </line>
<line>ATOM 4156 CA LEU B 82 36.557 38.324 35.764 1.00 42.78 C </line>
<line>ATOM 4164 CA PRO B 83 38.687 41.070 37.388 1.00 38.33 C </line>
<line>ATOM 4171 CA ILE B 84 41.933 41.908 35.550 1.00 34.71 C </line>
</atom-coordinate>
<distance-map>
<line> ILE PRO LEU SER GLN LEU GLN GLN PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.83 5.86 8.68 9.88 13.48 12.86 9.78 6.91 3.81 </line>
<line>PRO CA 5.57 4.37 5.57 6.14 9.72 9.21 6.30 3.81 </line>
<line>GLN CA 5.85 5.87 5.26 5.46 8.53 6.24 3.82 </line>
<line>GLN CA 9.61 8.86 6.86 4.65 6.11 3.81 </line>
<line>LEU CA 11.25 10.36 7.27 5.19 4.95 </line>
<line>GLN CA 12.99 10.63 7.20 3.80 </line>
<line>SER CA 9.34 6.90 3.83 </line>
<line>LEU CA 6.46 3.84 </line>
<line>PRO CA 3.82 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLY CA 215</line>
<line>PRO CA 216</line>
<line>GLN CA 272</line>
<line>GLN CA 188</line>
<line>LEU CA 220</line>
<line>GLN CA 118</line>
<line>SER CA 161</line>
<line>LEU CA 242</line>
<line>PRO CA 282</line>
<line>ILE CA 373</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3DLJ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLJB</entryIDChain>
<sequence>GPQQLGQSLPI</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 536 CA GLY A 72 41.988 -9.337 43.040 1.00 47.29 C </line>
<line>ATOM 540 CA PRO A 73 44.026 -6.505 41.361 1.00 48.60 C </line>
<line>ATOM 547 CA GLN A 74 43.296 -4.392 38.307 1.00 50.15 C </line>
<line>ATOM 556 CA GLN A 75 46.573 -3.974 36.405 1.00 53.34 C </line>
<line>ATOM 562 CA LEU A 76 46.933 -0.341 35.279 1.00 55.04 C </line>
<line>ATOM 570 CA GLY A 79 52.800 0.189 35.867 1.00 56.73 C </line>
<line>ATOM 574 CA GLN A 80 50.470 0.480 38.882 1.00 55.88 C </line>
<line>ATOM 579 CA SER A 81 47.382 -1.395 40.155 1.00 52.23 C </line>
<line>ATOM 585 CA LEU A 82 44.062 -1.048 42.075 1.00 48.96 C </line>
<line>ATOM 593 CA PRO A 83 41.835 -3.592 43.876 1.00 45.53 C </line>
<line>ATOM 600 CA ILE A 84 38.729 -4.664 41.944 1.00 42.45 C </line>
</atom-coordinate>
<distance-map>
<line> ILE PRO LEU SER GLN GLY LEU GLN GLN PRO GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.80 5.81 8.60 10.02 13.62 16.10 12.87 9.69 6.97 3.87 </line>
<line>PRO CA 5.64 4.43 5.50 6.23 9.82 12.33 9.13 6.12 3.78 </line>
<line>GLN CA 5.84 5.81 5.10 5.39 8.69 10.83 6.23 3.81 </line>
<line>GLN CA 9.63 8.85 6.86 4.62 6.42 7.51 3.82 </line>
<line>LEU CA 11.42 10.51 7.41 5.01 5.12 5.92 </line>
<line>GLY CA 16.08 14.10 10.79 7.09 3.82 </line>
<line>GLN CA 13.18 10.77 7.32 3.83 </line>
<line>SER CA 9.42 7.03 3.85 </line>
<line>LEU CA 6.44 3.83 </line>
<line>PRO CA 3.81 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>GLY CA 207</line>
<line>PRO CA 209</line>
<line>GLN CA 244</line>
<line>GLN CA 152</line>
<line>LEU CA 157</line>
<line>GLY CA 63</line>
<line>GLN CA 104</line>
<line>SER CA 159</line>
<line>LEU CA 238</line>
<line>PRO CA 271</line>
<line>ILE CA 361</line>
</n14>
</entryChain>
<parallel>
<x>0.0</x>
<y>0.0</y>
<z>0.0</z>
</parallel>
<rotation>
<x>1.0</x>
<y>0.0</y>
<z>-0.0</z>
<x>-0.0</x>
<y>1.0</y>
<z>-0.0</z>
<x>0.0</x>
<y>0.0</y>
<z>1.0</z>
</rotation>
<rmsd>9.999999974752427E-7</rmsd>
<dmax>1.9999999949504854E-6</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3DLJ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLJB</entryIDChain>
<sequence>IRTVF-TEPDM</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 6632 CA ILE B 408 75.808 41.653 25.466 1.00 35.81 C </line>
<line>ATOM 6640 CA ARG B 409 79.414 41.966 24.188 1.00 38.36 C </line>
<line>ATOM 6645 CA THR B 410 80.791 42.621 27.717 1.00 39.39 C </line>
<line>ATOM 6652 CA VAL B 411 79.020 39.629 29.386 1.00 39.45 C </line>
<line>ATOM 6659 CA PHE B 412 78.914 37.175 26.454 1.00 40.15 C </line>
<line>ATOM 6670 CA THR B 414 80.327 37.486 20.933 1.00 43.30 C </line>
<line>ATOM 6675 CA GLU B 415 78.254 40.249 19.273 1.00 42.38 C </line>
<line>ATOM 6680 CA PRO B 416 74.506 39.562 19.227 1.00 40.93 C </line>
<line>ATOM 6687 CA ASP B 417 72.760 38.179 16.178 1.00 40.25 C </line>
<line>ATOM 6695 CA MET B 418 69.897 40.375 14.986 1.00 36.95 C </line>
</atom-coordinate>
<distance-map>
<line> MET ASP PRO GLU THR PHE VAL THR ARG ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 12.10 10.37 6.71 6.80 7.64 5.54 5.46 5.55 3.84 </line>
<line>ARG CA 13.33 11.08 7.38 5.33 5.61 5.32 5.71 3.84 </line>
<line>THR CA 16.91 14.74 11.00 9.13 8.52 5.90 3.86 </line>
<line>VAL CA 17.06 14.69 11.12 10.16 8.82 3.82 </line>
<line>PHE CA 14.94 12.02 8.80 7.84 5.71 </line>
<line>THR CA 12.35 8.96 6.41 3.83 </line>
<line>GLU CA 9.39 6.64 3.81 </line>
<line>PRO CA 6.32 3.78 </line>
<line>ASP CA 3.80 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>ILE CA 386</line>
<line>ARG CA 278</line>
<line>THR CA 274</line>
<line>VAL CA 324</line>
<line>PHE CA 283</line>
<line>THR CA 189</line>
<line>GLU CA 244</line>
<line>PRO CA 356</line>
<line>ASP CA 364</line>
<line>MET CA 421</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3DLJ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLJB</entryIDChain>
<sequence>IRTVFGTEPDM</sequence>
<secondary-structure>HH </secondary-structure>
<atom-coordinate>
<line>ATOM 3049 CA ILE A 408 4.335 -5.312 30.824 1.00 35.62 C </line>
<line>ATOM 3057 CA ARG A 409 0.735 -5.679 29.695 1.00 36.13 C </line>
<line>ATOM 3062 CA THR A 410 -0.361 -6.159 33.341 1.00 35.26 C </line>
<line>ATOM 3069 CA VAL A 411 1.418 -3.055 34.732 1.00 36.46 C </line>
<line>ATOM 3076 CA PHE A 412 1.157 -0.567 31.869 1.00 38.70 C </line>
<line>ATOM 3087 CA GLY A 413 -2.043 -1.862 30.305 1.00 41.93 C </line>
<line>ATOM 3091 CA THR A 414 -0.461 -2.009 26.867 1.00 44.90 C </line>
<line>ATOM 3098 CA GLU A 415 1.598 -4.195 24.552 1.00 46.31 C </line>
<line>ATOM 3107 CA PRO A 416 5.380 -3.635 24.586 1.00 44.37 C </line>
<line>ATOM 3114 CA ASP A 417 7.118 -3.005 21.292 1.00 42.65 C </line>
<line>ATOM 3122 CA MET A 418 9.952 -5.425 20.642 1.00 38.96 C </line>
</atom-coordinate>
<distance-map>
<line> MET ASP PRO GLU THR GLY PHE VAL THR ARG ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 11.63 10.19 6.54 6.93 7.04 7.27 5.81 5.37 5.39 3.79 </line>
<line>ARG CA 12.92 10.89 7.20 5.42 4.79 4.76 5.57 5.72 3.84 </line>
<line>THR CA 16.38 14.53 10.77 9.22 7.69 5.52 5.98 3.84 </line>
<line>VAL CA 16.64 14.60 10.91 10.25 8.15 5.74 3.80 </line>
<line>PHE CA 15.07 12.38 8.96 8.18 5.45 3.79 </line>
<line>GLY CA 15.81 12.90 9.54 7.20 3.79 </line>
<line>THR CA 12.60 9.46 6.48 3.79 </line>
<line>GLU CA 9.31 6.52 3.82 </line>
<line>PRO CA 6.30 3.78 </line>
<line>ASP CA 3.78 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>ILE CA 410</line>
<line>ARG CA 301</line>
<line>THR CA 314</line>
<line>VAL CA 376</line>
<line>PHE CA 313</line>
<line>GLY CA 216</line>
<line>THR CA 216</line>
<line>GLU CA 242</line>
<line>PRO CA 363</line>
<line>ASP CA 367</line>
<line>MET CA 417</line>
</n14>
</entryChain>
<parallel>
<x>0.0</x>
<y>0.0</y>
<z>0.0</z>
</parallel>
<rotation>
<x>1.0</x>
<y>-0.0</y>
<z>-0.0</z>
<x>-0.0</x>
<y>1.0</y>
<z>0.0</z>
<x>0.0</x>
<y>0.0</y>
<z>1.0</z>
</rotation>
<rmsd>9.999999974752427E-7</rmsd>
<dmax>9.999999974752427E-7</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>3DLJ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLJB</entryIDChain>
<sequence>QEIVH--VVLIP</sequence>
<secondary-structure>HH -- EE </secondary-structure>
<atom-coordinate>
<line>ATOM 3227 CA GLN A 432 25.349 -16.107 25.877 1.00 52.55 C </line>
<line>ATOM 3236 CA GLU A 433 28.931 -17.293 25.144 1.00 54.55 C </line>
<line>ATOM 3245 CA ILE A 434 29.823 -18.771 28.569 1.00 55.49 C </line>
<line>ATOM 3250 CA VAL A 435 26.496 -19.847 30.175 1.00 56.04 C </line>
<line>ATOM 3255 CA HIS A 436 24.612 -20.244 26.835 1.00 56.89 C </line>
<line>ATOM 3265 CA VAL A 439 19.072 -13.204 28.529 1.00 40.96 C </line>
<line>ATOM 3272 CA VAL A 440 16.015 -10.897 28.566 1.00 38.29 C </line>
<line>ATOM 3279 CA LEU A 441 16.496 -7.129 28.432 1.00 37.54 C </line>
<line>ATOM 3287 CA ILE A 442 13.805 -5.241 30.346 1.00 35.66 C </line>
<line>ATOM 3295 CA PRO A 443 14.388 -1.490 29.948 1.00 33.59 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ILE LEU VAL VAL HIS VAL ILE GLU GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 18.72 16.47 12.86 11.02 7.41 4.31 5.81 5.86 3.84 </line>
<line>GLU CA 22.01 20.03 16.39 14.81 11.20 5.50 6.15 3.84 </line>
<line>ILE CA 23.21 21.04 17.70 15.90 12.11 5.69 3.85 </line>
<line>VAL CA 21.99 19.35 16.27 13.88 10.10 3.86 </line>
<line>HIS CA 21.59 18.82 15.51 12.82 9.12 </line>
<line>VAL CA 12.70 9.72 6.60 3.83 </line>
<line>VAL CA 9.65 6.33 3.80 </line>
<line>LEU CA 6.21 3.80 </line>
<line>ILE CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>GLN CA 322</line>
<line>GLU CA 240</line>
<line>ILE CA 249</line>
<line>VAL CA 288</line>
<line>HIS CA 248</line>
<line>VAL CA 440</line>
<line>VAL CA 498</line>
<line>LEU CA 536</line>
<line>ILE CA 586</line>
<line>PRO CA 568</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3DLJ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLJB</entryIDChain>
<sequence>QEIVHKSVVLIP</sequence>
<secondary-structure>HH EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 6803 CA GLN B 432 55.728 51.977 18.870 1.00 39.08 C </line>
<line>ATOM 6812 CA GLU B 433 52.355 53.140 17.503 1.00 39.60 C </line>
<line>ATOM 6817 CA ILE B 434 51.291 55.075 20.648 1.00 39.30 C </line>
<line>ATOM 6825 CA VAL B 435 54.447 56.460 22.314 1.00 40.17 C </line>
<line>ATOM 6832 CA HIS B 436 56.723 56.648 19.235 1.00 41.88 C </line>
<line>ATOM 6842 CA LYS B 437 59.767 55.487 21.236 1.00 40.75 C </line>
<line>ATOM 6849 CA SER B 438 62.064 52.507 20.553 1.00 39.07 C </line>
<line>ATOM 6855 CA VAL B 439 61.610 48.875 21.675 1.00 35.84 C </line>
<line>ATOM 6862 CA VAL B 440 64.698 46.858 22.677 1.00 35.21 C </line>
<line>ATOM 6869 CA LEU B 441 64.164 43.120 23.070 1.00 35.30 C </line>
<line>ATOM 6877 CA ILE B 442 66.990 41.273 24.862 1.00 36.40 C </line>
<line>ATOM 6885 CA PRO B 443 66.154 37.549 24.968 1.00 35.34 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ILE LEU VAL VAL SER LYS HIS VAL ILE GLU GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 18.82 16.65 12.93 11.01 7.22 6.58 5.85 4.79 5.80 5.70 3.82 </line>
<line>GLU CA 22.12 20.23 16.46 14.78 11.01 10.20 8.62 5.86 6.21 3.84 </line>
<line>ILE CA 23.38 21.32 17.73 15.86 12.08 11.08 8.51 5.83 3.83 </line>
<line>VAL CA 22.40 19.86 16.52 14.05 10.45 8.76 5.51 3.83 </line>
<line>HIS CA 22.06 19.33 15.91 13.09 9.50 6.89 3.82 </line>
<line>LYS CA 19.40 16.35 13.25 10.04 6.88 3.82 </line>
<line>SER CA 16.12 13.00 9.94 6.58 3.83 </line>
<line>VAL CA 12.64 9.84 6.45 3.82 </line>
<line>VAL CA 9.70 6.42 3.80 </line>
<line>LEU CA 6.21 3.82 </line>
<line>ILE CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>GLN CA 364</line>
<line>GLU CA 260</line>
<line>ILE CA 276</line>
<line>VAL CA 291</line>
<line>HIS CA 264</line>
<line>LYS CA 332</line>
<line>SER CA 381</line>
<line>VAL CA 475</line>
<line>VAL CA 526</line>
<line>LEU CA 569</line>
<line>ILE CA 583</line>
<line>PRO CA 563</line>
</n14>
</entryChain>
<parallel>
<x>0.0</x>
<y>0.0</y>
<z>0.0</z>
</parallel>
<rotation>
<x>1.0</x>
<y>0.0</y>
<z>-0.0</z>
<x>-0.0</x>
<y>1.0</y>
<z>0.0</z>
<x>0.0</x>
<y>0.0</y>
<z>1.0</z>
</rotation>
<rmsd>1.9999999949504854E-6</rmsd>
<dmax>3.000000106112566E-6</dmax>
</indel>