NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
3DLAB-3DLAC
confEVID 3DLAB-3DLAC
pdbIDA 3DLA
pdbIDB 3DLA
pdbChainA B
pdbChainB C
identity 0.975799977779388
indelSize 2
alignment <alignment>
<seq1>-MNFYSAYQHGFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGTDLLFAASDLPGFVLHVEICEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTTDLAWDGQTMIWENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRRIDFALDPPAGDIGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPG-KNNAIKLARALGVTFSEIDIGDTARLMLHTIGHV----------TFENVQAGLRTDYLFRIANQRGGIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTEITSEAKVGPFALQDFSLFQVLRYGFRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFSQFKRSALPNGPKVSHGGALSPRGDWRAPSDMSARIWLDQIDREVPKG</seq1>
<seq2>SMNFYSAYQHGFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIHRGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGTDLLFAASDLPGFVLHVEICEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAGEGESTTDLAWDGQTMIWENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTFDDNRRHHRELTESFRRIDFALDPPAGDIGLLREVERFPFVPADPQRLQQDCYEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFKNNAIKLARALGVTFSEIDIGDTARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTGDLSELALGWSTYGVGDQMSHYNVNAGVPKTLIQHLIRWVISAGEFGEKVGEVLQSVLDTE----AKVGPFALQDFSLFQVLRYGFRPSKIAFLAWHAWNDAERGNWPPGFPKSERPSYSLAEIRHWLQIFVQRFYSFSQFKRSALPNGPKVSHGGALSPRGDWRAPSDMSARIWLDQIDREVPKG</seq2>
<ss_1>- HHHH EEEEEEE HHHHHHHHHHHHHHH EEE GGGGG HHHHHHHHHHHHHHHHGGGG EEEEEEEEEE EEEEEEEEEE EEEEEEEE HHHH EEEEE EEEE EEEE EEEEEEEGGGG HHHHH EEEEE HHHHHHHHHHHHHHH EEEEEE EEEEEE EEEEEEEEEHHHHHHHHH HHHHHHHHH HHHHH EEE HHHHHHHHHHHHHHHHHHHHHHH EEEE HHHHHHHHHHHHHHHH EEEEE - HHHHHHHH EEE HHHHHHHHHH ---------- HHHHHHHHHHHHHHHHHHH EEEE HHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHIIIII HHHHH HHHHHHHHHH </ss_1>
<ss_2> EEEEEEE HHHHHHHHHHHHHHH EEE GGGGG HHHHHHHHHHHHHHHH EEEEEEEEEE EEEEEEEEEE EEEEE HHHH EEEEE EEEE EEEE EEEEEEEGGGGG HHHHH EEEEE HHHHHHHHHHHHHHH EEEEEE EEEEEE EEEEEEEEEHHHHHHHHH HHHHHHHHH HHHHH EEE HHHHHHHHHHHHHHHHHHHHHHHHH EEEE HHHHHHHHHHHHHHHH EEEEE HHHHHHHH EEE HHHHHHHHHH EE HHHHHHHHHHHHHHHHHHHHH EEEE HHHHH EEE EE HHHHHHHHHHH HHHHHHHHHHHHH ---- HHHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHIIIII HHHHH HHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>3DLA</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLAB</entryIDChain>
<sequence>FALPG-KNNAI</sequence>
<secondary-structure>EE - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 8054 CA PHE B 397 103.966 164.032 54.479 1.00 2.10 C </line>
<line>ATOM 8065 CA ALA B 398 104.721 165.689 57.802 1.00 2.89 C </line>
<line>ATOM 8070 CA LEU B 399 101.380 166.409 59.433 1.00 5.09 C </line>
<line>ATOM 8078 CA PRO B 400 101.954 168.604 62.523 1.00 7.20 C </line>
<line>ATOM 8085 CA GLY B 401 99.036 169.430 64.835 1.00 8.51 C </line>
<line>ATOM 8089 CA LYS B 409 110.379 165.159 62.763 1.00 24.32 C </line>
<line>ATOM 8094 CA ASN B 410 113.705 166.710 61.862 1.00 22.53 C </line>
<line>ATOM 8099 CA ASN B 411 114.993 163.317 60.640 1.00 18.89 C </line>
<line>ATOM 8107 CA ALA B 412 111.650 162.756 58.919 1.00 13.71 C </line>
<line>ATOM 8112 CA ILE B 413 112.354 165.606 56.440 1.00 10.94 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASN ASN LYS GLY PRO LEU ALA PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 8.76 8.97 12.65 12.51 10.54 12.68 9.47 6.07 3.79 </line>
<line>ALA CA 7.75 7.61 10.92 9.91 7.54 9.79 6.20 3.79 </line>
<line>LEU CA 11.40 10.91 14.01 12.57 9.68 6.62 3.83 </line>
<line>PRO CA 12.42 11.88 14.20 11.92 9.11 3.81 </line>
<line>GLY CA 16.20 15.45 17.60 15.21 12.30 </line>
<line>LYS CA 6.64 4.71 5.40 3.78 </line>
<line>ASN CA 5.70 5.34 3.83 </line>
<line>ASN CA 5.46 3.80 </line>
<line>ALA CA 3.84 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>PHE CA 410</line>
<line>ALA CA 339</line>
<line>LEU CA 327</line>
<line>PRO CA 261</line>
<line>GLY CA 239</line>
<line>LYS CA 268</line>
<line>ASN CA 225</line>
<line>ASN CA 302</line>
<line>ALA CA 354</line>
<line>ILE CA 299</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3DLA</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLAB</entryIDChain>
<sequence>FALPGFKNNAI</sequence>
<secondary-structure>EE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 13096 CA PHE C 397 72.855 163.296 62.637 1.00 3.26 C </line>
<line>ATOM 13107 CA ALA C 398 72.003 165.252 59.523 1.00 4.57 C </line>
<line>ATOM 13112 CA LEU C 399 75.283 166.107 57.789 1.00 6.58 C </line>
<line>ATOM 13120 CA PRO C 400 74.555 168.498 54.955 1.00 8.42 C </line>
<line>ATOM 13127 CA GLY C 401 77.292 169.674 52.569 1.00 11.54 C </line>
<line>ATOM 13131 CA PHE C 402 77.332 171.841 49.413 1.00 13.71 C </line>
<line>ATOM 13142 CA LYS C 409 66.015 165.292 54.077 1.00 21.05 C </line>
<line>ATOM 13151 CA ASN C 410 63.098 166.899 55.906 1.00 18.93 C </line>
<line>ATOM 13156 CA ASN C 411 62.233 163.162 56.013 1.00 15.96 C </line>
<line>ATOM 13164 CA ALA C 412 65.284 162.598 58.195 1.00 13.70 C </line>
<line>ATOM 13169 CA ILE C 413 64.319 165.157 60.877 1.00 12.45 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA ASN ASN LYS PHE GLY PRO LEU ALA PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 8.91 8.81 12.52 12.39 11.14 16.37 12.72 9.43 6.11 3.77 </line>
<line>ALA CA 7.80 7.35 10.59 9.75 8.09 13.19 9.79 6.16 3.81 </line>
<line>LEU CA 11.43 10.60 13.50 12.36 10.02 10.36 6.63 3.78 </line>
<line>PRO CA 12.29 11.46 13.47 11.61 9.16 7.04 3.82 </line>
<line>GLY CA 16.05 15.03 16.76 14.84 12.19 3.83 </line>
<line>PHE CA 18.59 17.54 18.62 16.41 13.88 </line>
<line>LYS CA 7.01 4.97 4.75 3.80 </line>
<line>ASN CA 5.41 5.34 3.84 </line>
<line>ASN CA 5.66 3.79 </line>
<line>ALA CA 3.83 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>PHE CA 416</line>
<line>ALA CA 354</line>
<line>LEU CA 352</line>
<line>PRO CA 287</line>
<line>GLY CA 284</line>
<line>PHE CA 259</line>
<line>LYS CA 269</line>
<line>ASN CA 236</line>
<line>ASN CA 305</line>
<line>ALA CA 361</line>
<line>ILE CA 300</line>
</n14>
</entryChain>
<parallel>
<x>0.0</x>
<y>0.0</y>
<z>0.0</z>
</parallel>
<rotation>
<x>1.0</x>
<y>0.0</y>
<z>0.0</z>
<x>0.0</x>
<y>1.0</y>
<z>-0.0</z>
<x>-0.0</x>
<y>0.0</y>
<z>1.0</z>
</rotation>
<rmsd>9.999999974752427E-7</rmsd>
<dmax>1.9999999949504854E-6</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>3DLA</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLAB</entryIDChain>
<sequence>VLDTE----AKVGP</sequence>
<secondary-structure>HHHH ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 14120 CA VAL C 537 60.628 158.119 52.271 1.00 10.64 C </line>
<line>ATOM 14127 CA LEU C 538 59.463 155.349 49.929 1.00 13.15 C </line>
<line>ATOM 14135 CA ASP C 539 57.488 157.795 47.809 1.00 16.96 C </line>
<line>ATOM 14143 CA THR C 540 60.453 160.188 47.565 1.00 19.38 C </line>
<line>ATOM 14150 CA GLU C 541 62.833 157.453 46.324 1.00 21.73 C </line>
<line>ATOM 14159 CA ALA C 559 73.357 154.484 39.582 1.00 19.49 C </line>
<line>ATOM 14164 CA LYS C 560 75.209 154.790 36.296 1.00 19.69 C </line>
<line>ATOM 14173 CA VAL C 561 76.731 151.597 37.669 1.00 15.25 C </line>
<line>ATOM 14180 CA GLY C 562 73.416 150.414 36.099 1.00 10.37 C </line>
<line>ATOM 14184 CA PRO C 563 70.014 149.332 37.471 1.00 6.51 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLY VAL LYS ALA GLU THR ASP LEU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 19.60 22.01 22.69 21.88 18.34 6.38 5.14 5.47 3.81 </line>
<line>LEU CA 17.40 20.26 21.51 20.84 17.35 5.36 5.48 3.79 </line>
<line>ASP CA 18.31 21.10 22.62 21.35 18.18 5.56 3.82 </line>
<line>THR CA 17.64 19.88 20.90 19.34 16.21 3.83 </line>
<line>GLU CA 14.00 16.31 17.39 16.15 12.85 </line>
<line>ALA CA 6.49 5.36 4.84 3.78 </line>
<line>LYS CA 7.63 4.73 3.79 </line>
<line>VAL CA 7.09 3.85 </line>
<line>GLY CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>VAL CA 313</line>
<line>LEU CA 316</line>
<line>ASP CA 231</line>
<line>THR CA 202</line>
<line>GLU CA 263</line>
<line>ALA CA 246</line>
<line>LYS CA 212</line>
<line>VAL CA 312</line>
<line>GLY CA 327</line>
<line>PRO CA 388</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3DLA</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3DLAB</entryIDChain>
<sequence>VLDTEITSEAKVGP</sequence>
<secondary-structure>HHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 8972 CA VAL B 537 116.095 157.719 63.914 1.00 10.24 C </line>
<line>ATOM 8979 CA LEU B 538 117.394 154.762 65.978 1.00 12.14 C </line>
<line>ATOM 8987 CA ASP B 539 119.286 156.855 68.551 1.00 15.30 C </line>
<line>ATOM 8995 CA THR B 540 116.458 159.405 68.812 1.00 17.35 C </line>
<line>ATOM 9002 CA GLU B 541 113.495 157.084 68.869 1.00 19.28 C </line>
<line>ATOM 9011 CA ILE B 542 114.888 154.360 71.193 1.00 21.69 C </line>
<line>ATOM 9019 CA THR B 543 116.384 156.944 73.583 1.00 23.20 C </line>
<line>ATOM 9026 CA SER B 557 104.813 157.003 74.662 1.00 34.27 C </line>
<line>ATOM 9032 CA GLU B 558 103.183 153.601 73.904 1.00 33.06 C </line>
<line>ATOM 9041 CA ALA B 559 104.430 151.527 76.863 1.00 30.58 C </line>
<line>ATOM 9046 CA LYS B 560 101.488 151.994 79.194 1.00 27.88 C </line>
<line>ATOM 9055 CA VAL B 561 100.135 149.096 77.215 1.00 22.13 C </line>
<line>ATOM 9062 CA GLY B 562 103.470 147.854 78.691 1.00 16.44 C </line>
<line>ATOM 9066 CA PRO B 563 107.034 147.109 77.516 1.00 12.27 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLY VAL LYS ALA GLU SER THR ILE GLU THR ASP LEU VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 19.49 21.80 22.49 21.90 18.50 16.84 15.60 9.70 8.11 5.63 5.19 5.69 3.83 </line>
<line>LEU CA 17.29 20.08 21.36 20.86 17.23 16.31 15.45 7.98 5.80 5.38 5.52 3.82 </line>
<line>ASP CA 18.04 20.83 22.41 21.30 17.84 17.28 15.71 5.81 5.71 5.80 3.82 </line>
<line>THR CA 17.77 19.99 21.06 19.67 16.48 15.36 13.25 5.37 5.80 3.76 </line>
<line>GLU CA 14.70 16.80 17.66 16.63 13.30 11.99 10.44 5.53 3.84 </line>
<line>ILE CA 12.42 15.13 16.78 15.79 12.23 12.04 10.98 3.82 </line>
<line>THR CA 14.13 16.60 18.41 16.67 13.53 13.62 11.62 </line>
<line>SER CA 10.53 10.09 9.54 7.53 5.91 3.85 </line>
<line>GLU CA 8.37 7.49 6.37 5.78 3.82 </line>
<line>ALA CA 5.17 4.21 4.95 3.78 </line>
<line>LYS CA 7.58 4.62 3.76 </line>
<line>VAL CA 7.19 3.85 </line>
<line>GLY CA 3.83 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>VAL CA 333</line>
<line>LEU CA 333</line>
<line>ASP CA 243</line>
<line>THR CA 217</line>
<line>GLU CA 280</line>
<line>ILE CA 300</line>
<line>THR CA 181</line>
<line>SER CA 195</line>
<line>GLU CA 284</line>
<line>ALA CA 272</line>
<line>LYS CA 231</line>
<line>VAL CA 324</line>
<line>GLY CA 344</line>
<line>PRO CA 404</line>
</n14>
</entryChain>
<parallel>
<x>0.0</x>
<y>0.0</y>
<z>0.0</z>
</parallel>
<rotation>
<x>1.0</x>
<y>-0.0</y>
<z>0.0</z>
<x>0.0</x>
<y>1.0</y>
<z>-0.0</z>
<x>-0.0</x>
<y>0.0</y>
<z>1.0</z>
</rotation>
<rmsd>9.999999974752427E-7</rmsd>
<dmax>9.999999974752427E-7</dmax>
</indel>