NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DQQA-1X9QA
confEVID 1DQQA-1X9QA
pdbIDA 1DQQ
pdbIDB 1X9Q
pdbChainA A
pdbChainB A
identity 0.306100010871887
indelSize 3
alignment <alignment>
<seq1>-DIVLTQSPATLSVTPGDSVSLSCRASQSIS-----NNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDG-----SER------------------QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK---SFNRNEC</seq1>
<seq2>SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEKDGGV---KLDETGGGLVQPG-GAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRD---DSK----SSVYLQMNNLRVEDTGIYYCTGASY----GMEYLGQGTSVTVS</seq2>
<ss_1>- EEEEE EEE EEEEEE ----- EEEEEEE EEEEE EEE EEEEEEEEEEEEEEE GGG EEEEEEE EEEE EEEEE HHHHH EEEEEEEEEEEEE EEEEEE -----EEE------------------ EEEEE EEEEEEEEEEEHHGGG EEEEEEEE EEE---EEE </ss_1>
<ss_2> EEEEE EEEEEE EEEEEEEE EEEEE EEE EEEEEEEEEEEEEEE GGG EEEEEEE EEEE ---EEEEE - EEEEEEEE GGG EEEEEEEE EEEEEEEE EEEEE EEEEEEE--- ----EEEEEEE GGG EEEEEEEEE ---- EEE EEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DQQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DQQA</entryIDChain>
<sequence>SQSIS-----NNLHW</sequence>
<secondary-structure> ----- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 190 CA SER A 26 8.219 -21.532 -15.710 1.00 34.42 C </line>
<line>ATOM 196 CA GLN A 27 7.332 -25.234 -15.899 1.00 35.66 C </line>
<line>ATOM 205 CA SER A 28 4.325 -27.326 -16.872 1.00 35.25 C </line>
<line>ATOM 211 CA ILE A 29 1.922 -27.341 -13.925 1.00 33.94 C </line>
<line>ATOM 219 CA SER A 30 -0.959 -29.253 -15.487 1.00 33.26 C </line>
<line>ATOM 225 CA ASN A 31 -4.203 -27.641 -14.325 1.00 30.10 C </line>
<line>ATOM 233 CA ASN A 32 -2.996 -26.904 -10.783 1.00 26.21 C </line>
<line>ATOM 241 CA LEU A 33 -3.467 -23.146 -11.225 1.00 24.74 C </line>
<line>ATOM 249 CA HIS A 34 -5.784 -20.908 -9.205 1.00 22.94 C </line>
<line>ATOM 259 CA TRP A 35 -6.896 -17.281 -9.553 1.00 23.21 C </line>
</atom-coordinate>
<distance-map>
<line> TRP HIS LEU ASN ASN SER ILE SER GLN SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 16.87 15.45 12.62 13.38 13.91 12.00 8.75 7.08 3.81 </line>
<line>GLN CA 17.49 15.35 11.95 11.65 11.89 9.22 6.13 3.79 </line>
<line>SER CA 16.74 14.22 10.49 9.53 8.91 5.79 3.80 </line>
<line>ILE CA 14.07 11.09 7.34 5.85 6.15 3.79 </line>
<line>SER CA 14.62 11.51 7.86 5.64 3.80 </line>
<line>ASN CA 11.72 8.61 5.51 3.81 </line>
<line>ASN CA 10.46 6.80 3.81 </line>
<line>LEU CA 7.00 3.80 </line>
<line>HIS CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>SER CA 234</line>
<line>GLN CA 225</line>
<line>SER CA 222</line>
<line>ILE CA 289</line>
<line>SER CA 258</line>
<line>ASN CA 293</line>
<line>ASN CA 339</line>
<line>LEU CA 421</line>
<line>HIS CA 445</line>
<line>TRP CA 489</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1X9Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1X9QA</entryIDChain>
<sequence>SQSLVHSNGNTYLRW</sequence>
<secondary-structure> EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 203 CA SER A 40 20.545 31.921 57.228 1.00 11.62 C </line>
<line>ATOM 209 CA GLN A 41 18.079 31.188 54.456 1.00 13.41 C </line>
<line>ATOM 218 CA SER A 42 17.718 31.798 50.752 1.00 12.10 C </line>
<line>ATOM 224 CA LEU A 43 17.059 35.357 49.731 1.00 10.99 C </line>
<line>ATOM 232 CA VAL A 44 15.475 34.290 46.444 1.00 10.73 C </line>
<line>ATOM 239 CA HIS A 45 11.953 35.690 46.357 1.00 11.64 C </line>
<line>ATOM 249 CA SER A 46 9.054 33.976 44.592 1.00 13.18 C </line>
<line>ATOM 255 CA ASN A 47 8.881 36.988 42.256 1.00 11.98 C </line>
<line>ATOM 263 CA GLY A 48 12.328 36.100 40.951 1.00 12.22 C </line>
<line>ATOM 267 CA ASN A 49 14.298 38.873 42.648 1.00 11.30 C </line>
<line>ATOM 275 CA THR A 50 17.003 38.393 45.292 1.00 9.91 C </line>
<line>ATOM 282 CA TYR A 51 16.759 41.339 47.682 1.00 9.52 C </line>
<line>ATOM 294 CA LEU A 52 20.324 41.863 48.937 1.00 10.85 C </line>
<line>ATOM 302 CA ARG A 53 21.795 45.336 49.393 1.00 10.85 C </line>
<line>ATOM 313 CA TRP A 54 25.279 46.540 50.225 1.00 9.91 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ARG LEU TYR THR ASN GLY ASN SER HIS VAL LEU SER GLN SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 16.89 15.59 12.95 13.93 14.03 17.32 18.71 19.64 17.20 14.36 12.15 8.95 7.07 3.78 </line>
<line>GLN CA 17.48 15.48 12.23 12.27 11.71 14.59 15.48 16.34 13.66 11.11 8.98 6.38 3.77 </line>
<line>SER CA 16.58 14.20 10.55 10.07 8.59 11.29 11.98 13.31 10.85 8.23 5.46 3.76 </line>
<line>LEU CA 13.89 11.05 7.32 6.33 5.38 8.38 10.00 11.20 9.61 6.13 3.80 </line>
<line>VAL CA 16.14 13.06 9.33 7.27 4.53 6.07 6.58 8.26 6.69 3.79 </line>
<line>HIS CA 17.61 14.11 10.72 7.53 5.83 5.42 5.43 5.29 3.80 </line>
<line>SER CA 21.28 17.73 14.43 11.10 9.12 7.43 5.34 3.82 </line>
<line>ASN CA 20.58 16.95 14.12 10.51 8.78 5.75 3.79 </line>
<line>GLY CA 19.05 15.69 12.69 9.61 6.78 3.80 </line>
<line>ASN CA 15.39 11.98 9.21 6.12 3.81 </line>
<line>THR CA 12.62 9.38 6.03 3.80 </line>
<line>TYR CA 10.30 6.65 3.82 </line>
<line>LEU CA 6.93 3.80 </line>
<line>ARG CA 3.78 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>SER CA 239</line>
<line>GLN CA 247</line>
<line>SER CA 269</line>
<line>LEU CA 344</line>
<line>VAL CA 259</line>
<line>HIS CA 248</line>
<line>SER CA 146</line>
<line>ASN CA 154</line>
<line>GLY CA 171</line>
<line>ASN CA 269</line>
<line>THR CA 348</line>
<line>TYR CA 457</line>
<line>LEU CA 500</line>
<line>ARG CA 543</line>
<line>TRP CA 545</line>
</n14>
</entryChain>
<parallel>
<x>-16.599000930786133</x>
<y>-61.816001892089844</y>
<z>-64.34300231933594</z>
</parallel>
<rotation>
<x>-0.20999999344348907</x>
<y>0.8709999918937683</y>
<z>-0.4449999928474426</z>
<x>-0.5609999895095825</x>
<y>0.26600000262260437</y>
<z>0.7839999794960022</z>
<x>0.8009999990463257</x>
<y>0.414000004529953</y>
<z>0.4320000112056732</z>
</rotation>
<rmsd>0.6732779741287231</rmsd>
<dmax>1.1121900081634521</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1X9Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1X9QA</entryIDChain>
<sequence>KDGGV---KLDET</sequence>
<secondary-structure> ---EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 878 CA LYS A 149 22.024 64.456 43.093 1.00 29.70 C </line>
<line>ATOM 883 CA ASP A 150 20.369 61.031 42.910 1.00 28.34 C </line>
<line>ATOM 891 CA GLY A 151 17.733 62.434 40.583 1.00 24.43 C </line>
<line>ATOM 895 CA GLY A 152 16.862 65.039 43.189 1.00 21.38 C </line>
<line>ATOM 899 CA VAL A 153 15.583 62.516 45.751 1.00 18.12 C </line>
<line>ATOM 906 CA LYS A 154 15.160 63.912 49.291 1.00 16.54 C </line>
<line>ATOM 915 CA LEU A 155 14.124 62.370 52.602 1.00 15.86 C </line>
<line>ATOM 923 CA ASP A 156 14.271 64.561 55.673 1.00 17.18 C </line>
<line>ATOM 931 CA GLU A 157 13.751 63.189 59.181 1.00 17.09 C </line>
<line>ATOM 940 CA THR A 158 12.626 65.464 62.022 1.00 15.97 C </line>
</atom-coordinate>
<distance-map>
<line> THR GLU ASP LEU LYS VAL GLY GLY ASP LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 21.16 18.13 14.78 12.54 9.26 7.23 5.20 5.37 3.81 </line>
<line>ASP CA 21.09 17.70 14.58 11.61 8.73 5.76 5.33 3.79 </line>
<line>GLY CA 22.25 19.03 15.63 12.55 9.20 5.60 3.79 </line>
<line>GLY CA 19.31 16.40 12.76 10.16 6.43 3.82 </line>
<line>VAL CA 16.80 13.57 10.22 7.01 3.83 </line>
<line>LYS CA 13.07 10.02 6.48 3.80 </line>
<line>LEU CA 10.03 6.64 3.78 </line>
<line>ASP CA 6.62 3.80 </line>
<line>GLU CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>LYS CA 134</line>
<line>ASP CA 200</line>
<line>GLY CA 147</line>
<line>GLY CA 144</line>
<line>VAL CA 253</line>
<line>LYS CA 273</line>
<line>LEU CA 374</line>
<line>ASP CA 323</line>
<line>GLU CA 344</line>
<line>THR CA 282</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DQQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DQQA</entryIDChain>
<sequence>IKRADAAPTVSIF</sequence>
<secondary-structure> EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 840 CA ILE A 106 -10.499 2.019 -14.345 1.00 30.60 C </line>
<line>ATOM 848 CA LYS A 107 -9.693 4.090 -17.410 1.00 29.83 C </line>
<line>ATOM 857 CA ARG A 108 -10.735 7.733 -17.460 1.00 27.71 C </line>
<line>ATOM 868 CA ALA A 109 -10.034 10.890 -19.425 1.00 26.87 C </line>
<line>ATOM 873 CA ASP A 110 -6.494 12.142 -18.903 1.00 27.93 C </line>
<line>ATOM 881 CA ALA A 111 -6.283 14.806 -16.197 1.00 24.87 C </line>
<line>ATOM 886 CA ALA A 112 -3.397 17.173 -15.509 1.00 22.71 C </line>
<line>ATOM 891 CA PRO A 113 -2.091 17.250 -11.934 1.00 20.73 C </line>
<line>ATOM 898 CA THR A 114 -2.664 20.296 -9.730 1.00 18.52 C </line>
<line>ATOM 905 CA VAL A 115 0.814 20.992 -8.302 1.00 16.14 C </line>
<line>ATOM 912 CA SER A 116 1.482 22.825 -5.019 1.00 16.40 C </line>
<line>ATOM 918 CA ILE A 117 4.816 23.549 -3.310 1.00 15.87 C </line>
<line>ATOM 926 CA PHE A 118 5.443 24.317 0.367 1.00 15.54 C </line>
</atom-coordinate>
<distance-map>
<line> PHE ILE SER VAL THR PRO ALA ALA ASP ALA ARG LYS ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 31.11 28.63 25.76 22.90 20.41 17.56 16.78 13.59 11.80 10.23 6.51 3.79 </line>
<line>LYS CA 30.89 28.07 25.09 21.89 19.26 16.15 14.64 11.31 8.79 7.10 3.79 </line>
<line>ARG CA 29.23 26.31 23.06 19.83 16.81 13.99 12.11 8.45 6.29 3.78 </line>
<line>ALA CA 28.49 25.31 21.97 18.53 15.39 12.64 9.94 6.31 3.79 </line>
<line>ASP CA 25.73 22.39 19.25 15.62 12.86 9.70 6.81 3.80 </line>
<line>ALA CA 22.41 19.12 15.80 12.29 9.22 6.46 3.80 </line>
<line>ALA CA 19.53 16.03 12.88 9.18 6.61 3.81 </line>
<line>PRO CA 16.06 12.72 9.57 5.97 3.80 </line>
<line>THR CA 13.56 10.38 6.77 3.82 </line>
<line>VAL CA 10.37 6.89 3.82 </line>
<line>SER CA 6.85 3.82 </line>
<line>ILE CA 3.81 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ILE CA 360</line>
<line>LYS CA 307</line>
<line>ARG CA 278</line>
<line>ALA CA 227</line>
<line>ASP CA 243</line>
<line>ALA CA 276</line>
<line>ALA CA 291</line>
<line>PRO CA 360</line>
<line>THR CA 297</line>
<line>VAL CA 334</line>
<line>SER CA 283</line>
<line>ILE CA 343</line>
<line>PHE CA 327</line>
</n14>
</entryChain>
<parallel>
<x>22.993999481201172</x>
<y>50.66699981689453</y>
<z>60.46099853515625</z>
</parallel>
<rotation>
<x>-0.0729999989271164</x>
<y>-0.8209999799728394</y>
<z>0.5659999847412109</z>
<x>-0.8529999852180481</x>
<y>0.3449999988079071</y>
<z>0.39100000262260437</z>
<x>0.515999972820282</x>
<y>0.45399999618530273</y>
<z>0.7260000109672546</z>
</rotation>
<rmsd>4.924289226531982</rmsd>
<dmax>6.02150821685791</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1X9Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1X9QA</entryIDChain>
<sequence>LVQPG-GAMKL</sequence>
<secondary-structure> - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 959 CA LEU A 162 16.163 63.676 74.289 1.00 14.13 C </line>
<line>ATOM 967 CA VAL A 163 13.489 62.079 76.450 1.00 13.64 C </line>
<line>ATOM 974 CA GLN A 164 13.400 60.115 79.707 1.00 11.63 C </line>
<line>ATOM 983 CA PRO A 165 12.128 56.500 79.828 1.00 11.86 C </line>
<line>ATOM 990 CA GLY A 166 8.366 56.070 79.510 1.00 11.34 C </line>
<line>ATOM 994 CA GLY A 167 8.261 59.096 77.251 1.00 12.37 C </line>
<line>ATOM 998 CA ALA A 168 6.942 59.403 73.715 1.00 14.07 C </line>
<line>ATOM 1003 CA MET A 169 8.269 61.040 70.604 1.00 16.35 C </line>
<line>ATOM 1013 CA LYS A 170 6.942 61.416 67.067 1.00 15.89 C </line>
<line>ATOM 1022 CA LEU A 171 9.339 61.287 64.127 1.00 14.64 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS MET ALA GLY GLY PRO GLN VAL LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.47 11.93 9.10 10.18 9.60 12.08 9.92 7.05 3.79 </line>
<line>VAL CA 13.03 11.46 7.91 7.58 6.07 8.47 6.66 3.80 </line>
<line>GLN CA 16.14 14.25 10.49 8.84 5.79 6.46 3.83 </line>
<line>PRO CA 16.65 14.63 10.98 8.53 5.32 3.80 </line>
<line>GLY CA 16.27 13.62 10.20 6.84 3.78 </line>
<line>GLY CA 13.35 10.53 6.93 3.79 </line>
<line>ALA CA 10.06 6.95 3.76 </line>
<line>MET CA 6.57 3.80 </line>
<line>LYS CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 209</line>
<line>VAL CA 217</line>
<line>GLN CA 181</line>
<line>PRO CA 189</line>
<line>GLY CA 194</line>
<line>GLY CA 227</line>
<line>ALA CA 268</line>
<line>MET CA 322</line>
<line>LYS CA 328</line>
<line>LEU CA 396</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DQQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DQQA</entryIDChain>
<sequence>SEQLTSGGASV</sequence>
<secondary-structure>HHHHH EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 957 CA SER A 122 9.455 28.067 10.860 1.00 16.47 C </line>
<line>ATOM 963 CA GLU A 123 8.491 25.434 13.425 1.00 16.09 C </line>
<line>ATOM 972 CA GLN A 124 10.439 22.658 11.702 1.00 15.01 C </line>
<line>ATOM 981 CA LEU A 125 13.450 24.876 10.980 1.00 17.29 C </line>
<line>ATOM 989 CA THR A 126 13.744 25.586 14.699 1.00 19.59 C </line>
<line>ATOM 997 CA ASER A 127 14.141 21.841 15.240 0.50 21.37 C </line>
<line>ATOM 1008 CA GLY A 128 16.827 21.731 12.550 1.00 20.04 C </line>
<line>ATOM 1012 CA GLY A 129 14.811 20.063 9.807 1.00 18.61 C </line>
<line>ATOM 1016 CA ALA A 130 13.763 21.412 6.422 1.00 15.63 C </line>
<line>ATOM 1021 CA SER A 131 11.111 19.454 4.529 1.00 15.37 C </line>
<line>ATOM 1027 CA VAL A 132 10.045 20.919 1.192 1.00 14.32 C </line>
</atom-coordinate>
<distance-map>
<line> VAL SER ALA GLY GLY SER THR LEU GLN GLU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 12.04 10.82 9.09 9.69 9.87 8.94 6.27 5.11 5.56 3.80 </line>
<line>GLU CA 13.13 11.03 9.64 9.05 9.16 6.94 5.41 5.56 3.80 </line>
<line>GLN CA 10.66 7.88 6.36 5.43 6.51 5.19 5.34 3.81 </line>
<line>LEU CA 11.09 8.75 5.73 5.14 4.87 5.28 3.80 </line>
<line>THR CA 14.76 12.16 9.27 7.45 5.38 3.80 </line>
<line>SER CA 14.66 11.38 8.84 5.76 3.80 </line>
<line>GLY CA 13.25 10.11 6.86 3.79 </line>
<line>GLY CA 9.88 6.47 3.79 </line>
<line>ALA CA 6.44 3.80 </line>
<line>SER CA 3.80 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>SER CA 176</line>
<line>GLU CA 126</line>
<line>GLN CA 180</line>
<line>LEU CA 200</line>
<line>THR CA 138</line>
<line>SER CA 134</line>
<line>GLY CA 170</line>
<line>GLY CA 225</line>
<line>ALA CA 312</line>
<line>SER CA 355</line>
<line>VAL CA 426</line>
</n14>
</entryChain>
<parallel>
<x>-1.7450000047683716</x>
<y>36.01900100708008</y>
<z>65.11399841308594</z>
</parallel>
<rotation>
<x>-0.49799999594688416</x>
<y>-0.8600000143051147</y>
<z>-0.11100000143051147</z>
<x>0.8659999966621399</x>
<y>-0.49900001287460327</y>
<z>-0.01899999938905239</z>
<x>-0.039000000804662704</x>
<y>-0.10599999874830246</y>
<z>0.9940000176429749</z>
</rotation>
<rmsd>3.16241192817688</rmsd>
<dmax>4.38351583480835</dmax>
</indel>