NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DS8R-1AIJS
confEVID 1DS8R-1AIJS
pdbIDA 1DS8
pdbIDB 1AIJ
pdbChainA R
pdbChainB S
identity 0.279500007629395
indelSize 3
alignment <alignment>
<seq1>------------ALLSFERKYRVPGGTL-------VGGNLFDFWVGPFYVGFFGVATFFFAALGIILIAWSAVLQGTWN-------PQLISVYPPALEYGLGG-APLAKGGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAYLTLVLFRPVMMGAWGYAFPYGIWTHLDWVSNTGYTYGNFHYNPAHMIAISFFFTNALALALHGALVLS------------AANPEKGKEMRTPDHEDTFFRDLVGYSIGTLGIHRLGLLLSLSAVFFSALCMIITGTIWFDQWVDWWQWWVKLPWWANIPGGING</seq1>
<seq2>YQNIFSQVQVRGPADLGMTEDVNLANRSGVGPFSTLLGWFGNAQLGPIYLGSLGVLSLFSGLMWFFTIGIWFWYQAGWNPAVFLRDLFFFSLEPPAPEYGLSFAAPLKEGGLWLIASFFMFVAVWSWWGRTYLRAQALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWSEAVPYGIFSHLDWTNNFSLVHGNLFYNPFHGLSIAFLYGSALLFAMHGATILAVSRFGGERELEQIADRG-----TAAERAALFWRWTMGFNATMEGIHRWAIWMAVLVTLTGGIGILLSGTVVDN-----WYVWGQNH-----------</seq2>
<ss_1>------------ ------- EEE HHHHHHHHHHHHHHHHHHHHHHH -------HHHH GGG - HHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHIIIIHHHHH GGG HHHHHHHHHHGGG GGG HHHHHHHHHHHHHHHHHHHHHHHHHH------------HH HHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHH GGHHHH </ss_1>
<ss_2> GGG HHHHHHHHHHHHHHHHHHHHHHHH HHHHHH HHHH HHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHIIIIHHHHH GGG HHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHH -----HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHH -----HHHHH -----------</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DS8</pdbID>
<pdbChain>R</pdbChain>
<entryIDChain>1DS8R</entryIDChain>
<sequence>YGLGG-APLAK</sequence>
<secondary-structure>G - </secondary-structure>
<atom-coordinate>
<line>ATOM 7062 CA TYR R 73 -3.571 33.912 56.976 1.00 65.17 C </line>
<line>ATOM 7074 CA GLY R 74 -0.226 35.438 57.931 1.00 65.09 C </line>
<line>ATOM 7078 CA LEU R 75 2.388 32.711 58.233 1.00 65.22 C </line>
<line>ATOM 7086 CA GLY R 76 -0.086 30.047 59.280 1.00 65.51 C </line>
<line>ATOM 7090 CA GLY R 77 -1.448 27.290 57.069 1.00 66.24 C </line>
<line>ATOM 7094 CA ALA R 78 -4.633 27.678 55.051 1.00 67.28 C </line>
<line>ATOM 7099 CA PRO R 79 -7.544 25.894 53.330 1.00 68.27 C </line>
<line>ATOM 7106 CA LEU R 80 -6.311 23.902 50.331 1.00 68.90 C </line>
<line>ATOM 7114 CA ALA R 81 -8.255 25.853 47.700 1.00 69.10 C </line>
<line>ATOM 7119 CA LYS R 82 -7.421 29.091 49.533 1.00 68.88 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ALA LEU PRO ALA GLY GLY LEU GLY TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 9.67 13.15 12.32 9.66 6.61 6.95 5.69 6.21 3.80 </line>
<line>GLY CA 12.75 16.16 15.10 12.88 9.38 8.28 5.56 3.79 </line>
<line>LEU CA 13.60 16.47 14.69 13.01 9.21 6.74 3.78 </line>
<line>GLY CA 12.24 14.78 12.51 10.41 6.65 3.79 </line>
<line>GLY CA 9.78 11.67 8.97 7.29 3.79 </line>
<line>ALA CA 6.34 8.40 6.27 3.82 </line>
<line>PRO CA 4.97 5.67 3.81 </line>
<line>LEU CA 5.37 3.81 </line>
<line>ALA CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>TYR CA 208</line>
<line>GLY CA 213</line>
<line>LEU CA 237</line>
<line>GLY CA 215</line>
<line>GLY CA 223</line>
<line>ALA CA 218</line>
<line>PRO CA 211</line>
<line>LEU CA 264</line>
<line>ALA CA 260</line>
<line>LYS CA 280</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1AIJ</pdbID>
<pdbChain>S</pdbChain>
<entryIDChain>1AIJS</entryIDChain>
<sequence>YGLSFAAPLKE</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 9523 CA TYR S 101 11.254 69.803 15.128 1.00 34.69 C </line>
<line>ATOM 9535 CA GLY S 102 10.501 66.355 13.636 1.00 31.68 C </line>
<line>ATOM 9539 CA LEU S 103 13.706 64.968 12.165 1.00 33.25 C </line>
<line>ATOM 9547 CA SER S 104 15.214 68.316 11.155 1.00 40.47 C </line>
<line>ATOM 9553 CA PHE S 105 18.630 69.391 12.324 1.00 39.96 C </line>
<line>ATOM 9564 CA ALA S 106 17.456 72.983 12.814 1.00 40.96 C </line>
<line>ATOM 9569 CA ALA S 107 17.029 72.666 16.586 1.00 40.98 C </line>
<line>ATOM 9574 CA PRO S 108 18.796 75.432 18.662 1.00 37.75 C </line>
<line>ATOM 9581 CA LEU S 109 21.775 74.097 20.637 1.00 34.99 C </line>
<line>ATOM 9589 CA LYS S 110 20.009 74.404 23.993 1.00 31.41 C </line>
<line>ATOM 9598 CA GLU S 111 16.856 72.755 22.566 1.00 36.70 C </line>
</atom-coordinate>
<distance-map>
<line> GLU LYS LEU PRO ALA ALA PHE SER LEU GLY TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 9.77 13.28 12.63 10.05 6.61 7.34 7.90 5.80 6.18 3.83 </line>
<line>GLY CA 12.69 16.20 15.36 13.28 9.55 9.64 8.78 5.68 3.79 </line>
<line>LEU CA 13.37 16.39 14.84 13.33 9.48 8.87 6.62 3.81 </line>
<line>SER CA 12.35 15.00 12.90 10.95 7.19 5.44 3.77 </line>
<line>PHE CA 10.93 12.77 10.06 8.76 5.61 3.81 </line>
<line>ALA CA 9.77 11.55 9.01 6.48 3.81 </line>
<line>ALA CA 5.98 8.17 6.40 3.88 </line>
<line>PRO CA 5.12 5.56 3.82 </line>
<line>LEU CA 5.45 3.80 </line>
<line>LYS CA 3.83 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>TYR CA 214</line>
<line>GLY CA 227</line>
<line>LEU CA 254</line>
<line>SER CA 234</line>
<line>PHE CA 241</line>
<line>ALA CA 187</line>
<line>ALA CA 228</line>
<line>PRO CA 209</line>
<line>LEU CA 262</line>
<line>LYS CA 265</line>
<line>GLU CA 281</line>
</n14>
</entryChain>
<parallel>
<x>-18.54199981689453</x>
<y>-40.52000045776367</y>
<z>40.987998962402344</z>
</parallel>
<rotation>
<x>0.2619999945163727</x>
<y>-0.9309999942779541</y>
<z>-0.2540000081062317</z>
<x>-0.9200000166893005</x>
<y>-0.32100000977516174</y>
<z>0.2240000069141388</z>
<x>-0.28999999165534973</x>
<y>0.17499999701976776</y>
<z>-0.9409999847412109</z>
</rotation>
<rmsd>0.5360770225524902</rmsd>
<dmax>1.2560280561447144</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1AIJ</pdbID>
<pdbChain>S</pdbChain>
<entryIDChain>1AIJS</entryIDChain>
<sequence>IADRG-----TAAER</sequence>
<secondary-structure>HH -----HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 10625 CA ILE S 238 38.403 20.999 19.695 1.00 32.06 C </line>
<line>ATOM 10633 CA ALA S 239 41.334 19.811 17.597 1.00 35.00 C </line>
<line>ATOM 10638 CA ASP S 240 42.095 16.710 19.726 1.00 35.59 C </line>
<line>ATOM 10646 CA ARG S 241 39.471 15.777 22.295 1.00 33.38 C </line>
<line>ATOM 10657 CA GLY S 242 40.779 14.990 25.771 1.00 22.88 C </line>
<line>ATOM 10661 CA THR S 243 39.206 13.482 28.882 1.00 28.49 C </line>
<line>ATOM 10668 CA ALA S 244 38.371 17.097 29.957 1.00 28.79 C </line>
<line>ATOM 10673 CA ALA S 245 36.021 17.472 26.987 1.00 28.75 C </line>
<line>ATOM 10678 CA GLU S 246 34.662 13.934 27.543 1.00 27.20 C </line>
<line>ATOM 10687 CA ARG S 247 33.873 14.422 31.220 1.00 24.98 C </line>
</atom-coordinate>
<distance-map>
<line> ARG GLU ALA ALA THR GLY ARG ASP ALA ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 14.02 11.20 8.44 10.98 11.90 8.87 5.93 5.66 3.80 </line>
<line>ALA CA 16.44 13.34 11.04 13.00 13.11 9.51 6.47 3.84 </line>
<line>ASP CA 14.32 11.14 9.50 10.89 10.13 6.42 3.79 </line>
<line>ARG CA 10.62 7.35 6.07 7.85 6.98 3.80 </line>
<line>GLY CA 8.82 6.46 5.50 5.27 3.80 </line>
<line>THR CA 5.90 4.76 5.45 3.86 </line>
<line>ALA CA 5.38 5.44 3.81 </line>
<line>ALA CA 5.64 3.83 </line>
<line>GLU CA 3.79 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>ILE CA 218</line>
<line>ALA CA 154</line>
<line>ASP CA 157</line>
<line>ARG CA 222</line>
<line>GLY CA 219</line>
<line>THR CA 240</line>
<line>ALA CA 306</line>
<line>ALA CA 336</line>
<line>GLU CA 296</line>
<line>ARG CA 281</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DS8</pdbID>
<pdbChain>R</pdbChain>
<entryIDChain>1DS8R</entryIDChain>
<sequence>AANPEKGKEMRTPDH</sequence>
<secondary-structure>HH H</secondary-structure>
<atom-coordinate>
<line>ATOM 8033 CA ALA R 197 39.399 30.826 16.370 1.00 36.69 C </line>
<line>ATOM 8038 CA ALA R 198 37.989 27.343 15.706 1.00 37.11 C </line>
<line>ATOM 8043 CA ASN R 199 36.367 28.549 12.473 1.00 38.79 C </line>
<line>ATOM 8051 CA PRO R 200 38.881 30.936 10.850 1.00 40.94 C </line>
<line>ATOM 8058 CA GLU R 201 38.494 32.251 7.305 1.00 44.82 C </line>
<line>ATOM 8067 CA LYS R 202 37.804 29.435 4.821 1.00 48.33 C </line>
<line>ATOM 8076 CA GLY R 203 40.875 27.344 4.066 1.00 48.95 C </line>
<line>ATOM 8080 CA LYS R 204 42.928 28.694 6.961 1.00 48.30 C </line>
<line>ATOM 8089 CA GLU R 205 44.393 26.648 9.798 1.00 47.35 C </line>
<line>ATOM 8098 CA MET R 206 42.528 26.457 13.079 1.00 45.42 C </line>
<line>ATOM 8106 CA ARG R 207 43.624 29.378 15.252 1.00 43.03 C </line>
<line>ATOM 8117 CA THR R 208 45.122 29.071 18.710 1.00 41.57 C </line>
<line>ATOM 8124 CA PRO R 209 44.242 30.492 22.162 1.00 40.48 C </line>
<line>ATOM 8131 CA ASP R 210 47.081 32.944 21.477 1.00 39.47 C </line>
<line>ATOM 8139 CA HIS R 211 45.110 34.374 18.573 1.00 39.10 C </line>
</atom-coordinate>
<distance-map>
<line> HIS ASP PRO THR ARG MET GLU LYS GLY LYS GLU PRO ASN ALA ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 7.08 9.46 7.56 6.43 4.60 6.30 9.25 10.27 12.87 11.74 9.22 5.55 5.44 3.82 </line>
<line>ALA CA 10.41 12.14 9.52 7.93 6.01 5.32 8.74 10.13 11.99 11.09 9.74 6.11 3.81 </line>
<line>ASN CA 12.15 14.67 12.64 10.76 7.81 6.53 8.67 8.57 9.62 7.84 6.70 3.83 </line>
<line>PRO CA 10.50 13.57 12.53 10.21 6.66 6.19 7.06 6.04 7.93 6.31 3.80 </line>
<line>GLU CA 13.24 16.59 16.03 13.57 9.89 9.12 8.51 5.69 6.34 3.82 </line>
<line>LYS CA 16.34 19.39 18.53 15.70 11.94 9.97 8.72 5.60 3.79 </line>
<line>GLY CA 16.67 19.31 18.67 15.34 11.70 9.21 6.76 3.80 </line>
<line>LYS CA 13.11 15.69 15.36 11.96 8.35 6.53 3.79 </line>
<line>GLU CA 11.71 13.54 12.95 9.26 6.15 3.78 </line>
<line>MET CA 9.98 11.55 10.09 6.73 3.80 </line>
<line>ARG CA 6.18 7.96 7.03 3.78 </line>
<line>THR CA 5.30 5.15 3.84 </line>
<line>PRO CA 5.36 3.81 </line>
<line>ASP CA 3.79 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>ALA CA 235</line>
<line>ALA CA 189</line>
<line>ASN CA 168</line>
<line>PRO CA 172</line>
<line>GLU CA 129</line>
<line>LYS CA 94</line>
<line>GLY CA 88</line>
<line>LYS CA 109</line>
<line>GLU CA 129</line>
<line>MET CA 155</line>
<line>ARG CA 191</line>
<line>THR CA 199</line>
<line>PRO CA 239</line>
<line>ASP CA 208</line>
<line>HIS CA 244</line>
</n14>
</entryChain>
<parallel>
<x>-1.0549999475479126</x>
<y>-12.814000129699707</y>
<z>9.010000228881836</z>
</parallel>
<rotation>
<x>-0.027000000700354576</x>
<y>-0.24400000274181366</y>
<z>0.968999981880188</z>
<x>-0.6970000267028809</x>
<y>-0.6899999976158142</y>
<z>-0.19300000369548798</z>
<x>-0.7160000205039978</x>
<y>0.6809999942779541</y>
<z>0.15199999511241913</z>
</rotation>
<rmsd>4.238992214202881</rmsd>
<dmax>7.358476161956787</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1AIJ</pdbID>
<pdbChain>S</pdbChain>
<entryIDChain>1AIJS</entryIDChain>
<sequence>TVVDN-----WYVWG</sequence>
<secondary-structure> -----HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 11018 CA THR S 289 5.254 52.143 14.594 1.00 38.70 C </line>
<line>ATOM 11025 CA VAL S 290 3.077 49.026 14.406 1.00 34.03 C </line>
<line>ATOM 11032 CA VAL S 291 1.808 48.413 17.953 1.00 30.23 C </line>
<line>ATOM 11039 CA ASP S 292 0.814 51.252 20.251 1.00 33.89 C </line>
<line>ATOM 11047 CA ASN S 293 -0.327 48.975 23.059 1.00 30.55 C </line>
<line>ATOM 11055 CA TRP S 294 0.906 45.489 23.666 1.00 30.58 C </line>
<line>ATOM 11069 CA TYR S 295 -1.891 44.506 26.143 1.00 27.11 C </line>
<line>ATOM 11081 CA VAL S 296 -4.435 45.313 23.412 1.00 26.45 C </line>
<line>ATOM 11088 CA TRP S 297 -2.416 43.505 20.722 1.00 34.18 C </line>
<line>ATOM 11102 CA GLY S 298 -2.213 40.553 23.111 1.00 29.50 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TRP VAL TYR TRP ASN ASP VAL VAL THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 16.21 13.08 14.77 15.58 12.06 10.62 7.25 6.09 3.81 </line>
<line>VAL CA 13.25 10.03 12.30 13.52 10.15 9.30 6.65 3.82 </line>
<line>VAL CA 10.23 7.04 8.85 9.80 6.48 5.56 3.79 </line>
<line>ASP CA 11.48 8.41 8.53 9.36 6.70 3.79 </line>
<line>ASN CA 8.63 6.30 5.51 5.65 3.75 </line>
<line>TRP CA 5.87 4.86 5.35 3.86 </line>
<line>TYR CA 4.99 5.54 3.82 </line>
<line>VAL CA 5.26 3.82 </line>
<line>TRP CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>THR CA 264</line>
<line>VAL CA 243</line>
<line>VAL CA 289</line>
<line>ASP CA 274</line>
<line>ASN CA 281</line>
<line>TRP CA 294</line>
<line>TYR CA 233</line>
<line>VAL CA 196</line>
<line>TRP CA 221</line>
<line>GLY CA 205</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DS8</pdbID>
<pdbChain>R</pdbChain>
<entryIDChain>1DS8R</entryIDChain>
<sequence>TIWFDQWVDWWQWWV</sequence>
<secondary-structure> GGHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 8461 CA THR R 253 11.237 44.665 55.103 1.00 45.17 C </line>
<line>ATOM 8468 CA ILE R 254 13.616 47.565 55.632 1.00 45.34 C </line>
<line>ATOM 8476 CA TRP R 255 12.422 49.778 52.776 1.00 44.41 C </line>
<line>ATOM 8490 CA PHE R 256 8.738 50.612 52.342 1.00 45.81 C </line>
<line>ATOM 8501 CA ASP R 257 8.383 53.840 50.373 1.00 45.75 C </line>
<line>ATOM 8509 CA GLN R 258 9.047 54.869 46.779 1.00 44.04 C </line>
<line>ATOM 8518 CA TRP R 259 12.516 53.635 45.849 1.00 41.14 C </line>
<line>ATOM 8532 CA VAL R 260 13.234 56.856 44.009 1.00 41.45 C </line>
<line>ATOM 8539 CA ASP R 261 13.235 58.649 47.384 1.00 42.77 C </line>
<line>ATOM 8547 CA TRP R 262 16.000 56.468 48.788 1.00 43.24 C </line>
<line>ATOM 8561 CA TRP R 263 18.408 58.433 46.602 1.00 44.61 C </line>
<line>ATOM 8575 CA GLN R 264 17.681 61.583 48.592 1.00 47.79 C </line>
<line>ATOM 8584 CA TRP R 265 20.380 60.492 51.063 1.00 49.52 C </line>
<line>ATOM 8598 CA TRP R 266 23.022 61.331 48.463 1.00 50.98 C </line>
<line>ATOM 8612 CA VAL R 267 21.436 64.630 47.479 1.00 52.24 C </line>
</atom-coordinate>
<distance-map>
<line> VAL TRP TRP GLN TRP TRP ASP VAL TRP GLN ASP PHE TRP ILE THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 23.68 21.46 18.72 19.24 17.70 14.21 16.10 16.60 12.95 13.35 10.71 7.02 5.74 3.79 </line>
<line>ILE CA 20.47 18.15 15.29 16.20 14.92 11.48 13.82 14.88 11.57 12.35 9.72 6.63 3.81 </line>
<line>TRP CA 18.16 16.26 13.46 13.58 12.20 8.57 10.41 11.30 7.93 8.56 6.21 3.80 </line>
<line>PHE CA 19.53 18.28 15.32 14.64 13.70 9.98 10.46 11.34 8.10 7.01 3.80 </line>
<line>ASP CA 17.18 16.55 13.74 12.23 11.65 8.21 7.46 8.55 6.13 3.80 </line>
<line>GLN CA 15.79 15.49 13.36 11.09 10.02 7.41 5.67 5.40 3.80 </line>
<line>TRP CA 14.25 13.28 11.66 9.87 7.64 5.37 5.29 3.78 </line>
<line>VAL CA 11.82 11.65 10.68 7.95 6.00 5.54 3.82 </line>
<line>ASP CA 10.15 10.21 8.25 5.46 5.24 3.79 </line>
<line>TRP CA 9.89 8.55 6.37 5.39 3.80 </line>
<line>TRP CA 6.95 5.76 5.29 3.80 </line>
<line>GLN CA 4.96 5.35 3.82 </line>
<line>TRP CA 5.58 3.80 </line>
<line>TRP CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>THR CA 267</line>
<line>ILE CA 233</line>
<line>TRP CA 300</line>
<line>PHE CA 265</line>
<line>ASP CA 255</line>
<line>GLN CA 275</line>
<line>TRP CA 319</line>
<line>VAL CA 287</line>
<line>ASP CA 255</line>
<line>TRP CA 287</line>
<line>TRP CA 270</line>
<line>GLN CA 242</line>
<line>TRP CA 214</line>
<line>TRP CA 209</line>
<line>VAL CA 209</line>
</n14>
</entryChain>
<parallel>
<x>-13.206999778747559</x>
<y>-5.230999946594238</y>
<z>-31.125</z>
</parallel>
<rotation>
<x>-0.08299999684095383</x>
<y>-0.9769999980926514</y>
<z>-0.19599999487400055</z>
<x>-0.7720000147819519</x>
<y>-0.061000000685453415</y>
<z>0.6320000290870667</z>
<x>-0.6299999952316284</x>
<y>0.20399999618530273</y>
<z>-0.75</z>
</rotation>
<rmsd>3.233458995819092</rmsd>
<dmax>4.63168478012085</dmax>
</indel>