NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DSUB-2IOTA
confEVID 1DSUB-2IOTA
pdbIDA 1DSU
pdbIDB 2IOT
pdbChainA B
pdbChainB A
identity 0.3125
indelSize 1
alignment <alignment>
<seq1>ILGGREAEAHARPYMASVQLN----GAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPDSQPDTI--DHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAES-NRRDSCKGDSGGPLVCG----GVLEGVVTS-GSRVCGNRKKPGIYTRVASYAAWIDSVLA--</seq1>
<seq2>VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVGEHNLNQNDGTEQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN</seq2>
<ss_1> EEEEEEE ---- EEEEEEEEEEEEE HHHHH EEEEEE EEEE EEEEE -- EEEEE EEEEEEE EEEEEEEEE HHHH EEEEE - EEE EEEEE ---- EEEEEE - EEEEEEGGGHHHHHHH --</ss_1>
<ss_2> EEEEEEEEE EEE EEEEEEEEEEEEE GGGG -- EEEEEE EEEE EEEEE GGG EEEEE EEEEE EEEE HHHH GGG EEEEE EEE EEEEEEE EEEEEEEEEE EEEEEEGG HHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DSU</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1DSUB</entryIDChain>
<sequence>SVQLN----GAHLC</sequence>
<secondary-structure>EEEE ---- E</secondary-structure>
<atom-coordinate>
<line>ATOM 1836 CA SER B 32 -7.590 17.327 -10.046 1.00 7.32 C </line>
<line>ATOM 1842 CA VAL B 33 -10.138 19.074 -7.854 1.00 7.18 C </line>
<line>ATOM 1849 CA GLN B 34 -11.639 21.793 -10.004 1.00 7.56 C </line>
<line>ATOM 1858 CA LEU B 35 -13.602 24.939 -9.326 1.00 12.16 C </line>
<line>ATOM 1866 CA ASN B 36 -15.819 26.215 -12.118 1.00 16.02 C </line>
<line>ATOM 1874 CA GLY B 38 -13.732 24.295 -14.721 1.00 12.21 C </line>
<line>ATOM 1878 CA ALA B 39 -10.229 25.212 -13.498 1.00 9.92 C </line>
<line>ATOM 1883 CA HIS B 40 -7.708 23.210 -11.470 1.00 8.89 C </line>
<line>ATOM 1893 CA LEU B 41 -7.744 24.289 -7.820 1.00 6.03 C </line>
<line>ATOM 1901 CA CYS B 42 -6.238 21.442 -5.783 1.00 11.92 C </line>
</atom-coordinate>
<distance-map>
<line> CYS LEU HIS ALA GLY ASN LEU GLN VAL SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 6.08 7.31 6.05 9.00 10.40 12.29 9.73 6.03 3.79 </line>
<line>VAL CA 5.01 5.74 6.01 8.34 9.35 10.07 6.97 3.78 </line>
<line>GLN CA 6.86 5.12 4.43 5.09 5.74 6.44 3.77 </line>
<line>LEU CA 8.89 6.08 6.51 5.37 5.43 3.79 </line>
<line>ASN CA 12.44 9.35 8.67 5.84 3.85 </line>
<line>GLY CA 12.01 9.14 6.93 3.82 </line>
<line>ALA CA 9.47 6.27 3.80 </line>
<line>HIS CA 6.13 3.81 </line>
<line>LEU CA 3.81 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>SER CA 524</line>
<line>VAL CA 485</line>
<line>GLN CA 384</line>
<line>LEU CA 264</line>
<line>ASN CA 190</line>
<line>GLY CA 232</line>
<line>ALA CA 280</line>
<line>HIS CA 385</line>
<line>LEU CA 390</line>
<line>CYS CA 472</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2IOTA</entryIDChain>
<sequence>SLQYRSGSSWAHTC</sequence>
<secondary-structure>EEEEEE EEE E</secondary-structure>
<atom-coordinate>
<line>ATOM 123 CA SER A 32 -2.177 -1.125 -1.316 1.00 4.22 C </line>
<line>ATOM 129 CA LEU A 33 -2.685 2.664 -1.421 1.00 4.99 C </line>
<line>ATOM 137 CA GLN A 34 -3.348 3.621 -5.039 1.00 7.43 C </line>
<line>ATOM 146 CA TYR A 35 -3.944 6.836 -6.998 1.00 11.08 C </line>
<line>ATOM 158 CA ARG A 36 -5.999 7.455 -10.152 1.00 17.17 C </line>
<line>ATOM 169 CA SER A 36A -4.001 7.754 -13.369 1.00 21.83 C </line>
<line>ATOM 175 CA GLY A 36B -6.223 8.086 -16.440 1.00 25.03 C </line>
<line>ATOM 179 CA SER A 36C -8.548 5.105 -16.905 1.00 26.29 C </line>
<line>ATOM 185 CA SER A 37 -6.509 2.961 -14.489 1.00 24.44 C </line>
<line>ATOM 191 CA TRP A 38 -5.127 3.006 -10.933 1.00 19.22 C </line>
<line>ATOM 205 CA ALA A 39 -1.471 2.920 -9.871 1.00 13.39 C </line>
<line>ATOM 210 CA HIS A 40 0.128 1.704 -6.627 1.00 7.69 C </line>
<line>ATOM 220 CA THR A 41 2.021 4.405 -4.750 1.00 7.17 C </line>
<line>ATOM 227 CA CYS A 42 2.328 3.159 -1.177 1.00 5.42 C </line>
</atom-coordinate>
<distance-map>
<line> CYS THR HIS ALA TRP SER SER GLY SER ARG TYR GLN LEU SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 6.22 7.75 6.44 9.49 10.87 14.46 17.96 18.16 15.08 12.90 9.94 6.14 3.82 </line>
<line>LEU CA 5.04 6.02 5.99 8.54 9.83 13.62 16.74 16.35 13.05 10.50 7.08 3.80 </line>
<line>GLN CA 6.88 5.43 4.28 5.23 6.19 9.99 13.04 12.58 9.32 6.92 3.81 </line>
<line>TYR CA 9.31 6.82 6.56 5.45 5.62 8.82 11.06 9.79 6.44 3.81 </line>
<line>ARG CA 12.97 10.14 9.11 6.41 4.60 6.27 7.59 6.32 3.80 </line>
<line>SER CA 14.48 11.03 9.96 6.48 5.45 5.52 6.34 3.81 </line>
<line>GLY CA 18.18 14.77 13.32 9.61 7.57 5.49 3.81 </line>
<line>SER CA 19.22 16.12 13.87 10.21 7.20 3.82 </line>
<line>SER CA 15.98 13.03 10.37 6.83 3.82 </line>
<line>TRP CA 12.28 9.55 6.92 3.81 </line>
<line>ALA CA 9.49 6.37 3.82 </line>
<line>HIS CA 6.05 3.79 </line>
<line>THR CA 3.80 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>SER CA 538</line>
<line>LEU CA 515</line>
<line>GLN CA 431</line>
<line>TYR CA 298</line>
<line>ARG CA 224</line>
<line>SER CA 159</line>
<line>GLY CA 107</line>
<line>SER CA 101</line>
<line>SER CA 172</line>
<line>TRP CA 255</line>
<line>ALA CA 320</line>
<line>HIS CA 425</line>
<line>THR CA 415</line>
<line>CYS CA 508</line>
</n14>
</entryChain>
<parallel>
<x>-8.229000091552734</x>
<y>19.37299919128418</y>
<z>-4.585000038146973</z>
</parallel>
<rotation>
<x>0.8730000257492065</x>
<y>0.43700000643730164</y>
<z>0.2160000056028366</z>
<x>-0.4659999907016754</x>
<y>0.6179999709129333</y>
<z>0.6330000162124634</z>
<x>0.14300000667572021</x>
<y>-0.652999997138977</y>
<z>0.7429999709129333</z>
</rotation>
<rmsd>0.33258700370788574</rmsd>
<dmax>0.5366389751434326</dmax>
</indel>