NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DUIA-2G4VA
confEVID 1DUIA-2G4VA
pdbIDA 1DUI
pdbIDB 2G4V
pdbChainA A
pdbChainB A
identity 0.322899997234344
indelSize 3
alignment <alignment>
<seq1>--AKCVSYGVSQIKAPALHS-----QGYTGSNVKVAVIDSGIDSSHP----DLNVAGGASFVPSETNPFQDNNSHGTHVAGTVLA----VAPSASLYAVKVLGADGSGQYSWIINGIEWAIAN-------NMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSICSTLPGNKYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK---LGNSFYYGKGLINVQAAAQ</seq1>
<seq2>AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVK--TYYY---SS-RDGNGHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-YSSSVNSAAARLQSSGVMVAVAAGNNN---ADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA-</seq2>
<ss_1>-- HHHH HHHH ----- EEEE ---- EE EEE HHHHHHHHHHH----H EEEEEE HHHHHHHHHHHHH ------- EEEE HHHHHHHHHHHH EEEE EEEEEE EEE EEEEE EEEEE HHHHHHHHHHHHHHHHHH HHHHHHHHGGG --- HHHH HHHH </ss_1>
<ss_2> HHHHH EEEEE -- --- - HHHHHHHHHH EEEEEE HHHHHHHHHHHHHGGGG EEEEE - HHHHHHHHHHHH EEEE --- GGEEE EEEEEE EEE EEEEE EEEEE HHHHHHHHHHHHHHHHH - HHHHHHHHHH EEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DUI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DUIA</entryIDChain>
<sequence>GTVLA----VAPSA</sequence>
<secondary-structure>HHHHH----H </secondary-structure>
<atom-coordinate>
<line>ATOM 497 CA GLY A 70 6.067 18.270 17.612 1.00 10.48 C </line>
<line>ATOM 501 CA THR A 71 6.270 16.871 21.107 1.00 7.62 C </line>
<line>ATOM 508 CA VAL A 72 6.552 20.282 22.662 1.00 1.49 C </line>
<line>ATOM 515 CA LEU A 73 3.545 21.368 20.640 1.00 6.13 C </line>
<line>ATOM 523 CA ALA A 74 1.644 18.294 21.741 1.00 8.76 C </line>
<line>ATOM 528 CA VAL A 84 2.177 19.209 25.302 1.00 5.61 C </line>
<line>ATOM 535 CA ALA A 85 1.607 22.993 24.592 1.00 7.79 C </line>
<line>ATOM 540 CA PRO A 86 -0.152 23.401 21.346 1.00 14.00 C </line>
<line>ATOM 547 CA SER A 87 -0.171 27.173 21.425 1.00 13.48 C </line>
<line>ATOM 553 CA ALA A 88 3.468 27.720 22.265 1.00 7.62 C </line>
</atom-coordinate>
<distance-map>
<line> ALA SER PRO ALA VAL ALA LEU VAL THR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 10.85 11.52 8.89 9.54 8.67 6.05 5.01 5.46 3.77 </line>
<line>THR CA 11.26 12.15 9.16 8.45 6.31 4.88 5.28 3.76 </line>
<line>VAL CA 8.06 9.71 7.51 5.96 5.22 5.37 3.78 </line>
<line>LEU CA 6.56 6.94 4.28 4.69 5.32 3.78 </line>
<line>ALA CA 9.62 9.07 5.43 5.50 3.72 </line>
<line>VAL CA 9.13 9.16 6.22 3.89 </line>
<line>ALA CA 5.59 5.54 3.71 </line>
<line>PRO CA 5.71 3.77 </line>
<line>SER CA 3.77 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 522</line>
<line>THR CA 568</line>
<line>VAL CA 588</line>
<line>LEU CA 500</line>
<line>ALA CA 463</line>
<line>VAL CA 498</line>
<line>ALA CA 461</line>
<line>PRO CA 383</line>
<line>SER CA 319</line>
<line>ALA CA 387</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2G4V</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2G4VA</entryIDChain>
<sequence>GTVGSRTYGVAKKT</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 559 CA GLY A 75 13.092 22.412 24.643 1.00 5.99 C </line>
<line>ATOM 563 CA THR A 76 16.222 20.258 24.031 1.00 6.31 C </line>
<line>ATOM 570 CA VAL A 77 14.236 17.821 21.894 1.00 5.13 C </line>
<line>ATOM 577 CA GLY A 78 12.469 20.380 19.667 1.00 4.64 C </line>
<line>ATOM 581 CA SER A 79 12.464 24.104 20.659 1.00 5.57 C </line>
<line>ATOM 587 CA ARG A 80 13.411 26.450 17.851 1.00 3.71 C </line>
<line>ATOM 598 CA THR A 81 16.611 27.742 19.572 1.00 4.20 C </line>
<line>ATOM 605 CA TYR A 82 17.583 25.004 21.994 1.00 4.89 C </line>
<line>ATOM 617 CA GLY A 83 16.310 21.855 20.210 1.00 3.87 C </line>
<line>ATOM 621 CA VAL A 84 17.868 19.131 18.076 1.00 5.34 C </line>
<line>ATOM 628 CA ALA A 85 14.750 18.495 16.004 1.00 4.63 C </line>
<line>ATOM 633 CA LYS A 86 13.383 22.038 15.470 1.00 5.04 C </line>
<line>ATOM 642 CA LYS A 87 10.367 20.983 13.424 1.00 5.11 C </line>
<line>ATOM 651 CA THR A 88 9.182 17.928 15.440 1.00 6.04 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS LYS ALA VAL GLY TYR THR ARG SER GLY VAL THR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 10.96 11.63 9.19 9.63 8.76 5.51 5.82 8.16 7.91 4.37 5.41 5.47 3.85 </line>
<line>THR CA 11.35 12.14 9.19 8.35 6.28 4.14 5.34 8.72 9.19 6.35 5.76 3.80 </line>
<line>VAL CA 8.20 9.83 7.73 5.95 5.43 4.84 7.93 10.46 9.56 6.64 3.82 </line>
<line>GLY CA 5.89 6.61 4.60 4.71 5.77 4.15 7.28 8.45 6.41 3.85 </line>
<line>SER CA 8.73 8.15 5.66 7.64 7.78 4.48 5.37 5.62 3.78 </line>
<line>ARG CA 9.81 7.67 5.01 8.28 8.57 5.92 6.05 3.86 </line>
<line>THR CA 12.98 11.07 7.73 10.08 8.83 5.93 3.78 </line>
<line>TYR CA 12.79 11.90 8.31 9.29 7.07 3.84 </line>
<line>GLY CA 9.43 9.06 5.57 5.60 3.79 </line>
<line>VAL CA 9.16 9.02 5.95 3.80 </line>
<line>ALA CA 5.63 5.66 3.83 </line>
<line>LYS CA 5.88 3.79 </line>
<line>LYS CA 3.85 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 577</line>
<line>THR CA 615</line>
<line>VAL CA 630</line>
<line>GLY CA 553</line>
<line>SER CA 487</line>
<line>ARG CA 400</line>
<line>THR CA 389</line>
<line>TYR CA 489</line>
<line>GLY CA 556</line>
<line>VAL CA 582</line>
<line>ALA CA 535</line>
<line>LYS CA 456</line>
<line>LYS CA 402</line>
<line>THR CA 453</line>
</n14>
</entryChain>
<parallel>
<x>-10.847000122070312</x>
<y>-0.49399998784065247</y>
<z>1.8200000524520874</z>
</parallel>
<rotation>
<x>-0.0989999994635582</x>
<y>-0.656000018119812</y>
<z>0.7490000128746033</z>
<x>-0.6819999814033508</x>
<y>-0.503000020980835</y>
<z>-0.531000018119812</z>
<x>0.7239999771118164</x>
<y>-0.5630000233650208</y>
<z>-0.3970000147819519</z>
</rotation>
<rmsd>1.4686800241470337</rmsd>
<dmax>3.474252939224243</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4V</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2G4VA</entryIDChain>
<sequence>AGNNN---ADARN</sequence>
<secondary-structure> --- GGE</secondary-structure>
<atom-coordinate>
<line>ATOM 1149 CA ALA A 159 21.104 6.430 32.752 1.00 4.92 C </line>
<line>ATOM 1154 CA GLY A 160 20.701 8.281 36.126 1.00 2.00 C </line>
<line>ATOM 1158 CA ASN A 161 22.889 10.710 38.042 1.00 6.76 C </line>
<line>ATOM 1166 CA ASN A 162 24.353 8.562 40.855 1.00 6.05 C </line>
<line>ATOM 1174 CA ASN A 163 27.873 8.135 39.336 1.00 4.68 C </line>
<line>ATOM 1182 CA ALA A 164 27.099 4.396 39.642 1.00 5.91 C </line>
<line>ATOM 1187 CA ASP A 165 26.417 1.346 37.459 1.00 4.79 C </line>
<line>ATOM 1195 CA ALA A 166 23.026 1.940 35.818 1.00 4.16 C </line>
<line>ATOM 1200 CA ARG A 167 22.246 -1.836 36.108 1.00 4.82 C </line>
<line>ATOM 1211 CA ASN A 168 20.666 -0.943 39.505 1.00 5.68 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ARG ALA ASP ALA ASN ASN ASN GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 10.01 8.99 5.77 8.73 9.36 9.60 8.99 7.03 3.87 </line>
<line>GLY CA 9.82 10.23 6.76 9.09 8.27 7.86 5.98 3.79 </line>
<line>ASN CA 11.95 12.71 9.05 10.02 7.76 5.76 3.83 </line>
<line>ASN CA 10.28 11.62 8.43 8.24 5.13 3.86 </line>
<line>ASN CA 11.59 11.90 8.62 7.19 3.83 </line>
<line>ALA CA 8.36 8.65 6.10 3.81 </line>
<line>ASP CA 6.52 5.42 3.81 </line>
<line>ALA CA 5.24 3.87 </line>
<line>ARG CA 3.85 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ALA CA 503</line>
<line>GLY CA 425</line>
<line>ASN CA 350</line>
<line>ASN CA 258</line>
<line>ASN CA 279</line>
<line>ALA CA 281</line>
<line>ASP CA 312</line>
<line>ALA CA 375</line>
<line>ARG CA 304</line>
<line>ASN CA 261</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DUI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DUIA</entryIDChain>
<sequence>AGNEGTSGSSSTV</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 1003 CA ALA A 153 19.781 13.688 30.359 1.00 6.61 C </line>
<line>ATOM 1008 CA GLY A 154 21.410 11.414 27.896 1.00 7.66 C </line>
<line>ATOM 1012 CA ASN A 155 21.024 7.803 26.671 1.00 5.62 C </line>
<line>ATOM 1020 CA GLU A 156 24.158 6.283 28.170 1.00 11.21 C </line>
<line>ATOM 1029 CA GLY A 157 22.654 3.596 30.440 1.00 1.00 C </line>
<line>ATOM 1033 CA THR A 158 24.630 3.057 33.543 1.00 11.05 C </line>
<line>ATOM 1040 CA SER A 159 28.221 2.532 34.428 1.00 11.45 C </line>
<line>ATOM 1046 CA GLY A 160 28.527 1.287 37.941 1.00 7.72 C </line>
<line>ATOM 1050 CA SER A 161 28.429 4.244 40.246 1.00 19.37 C </line>
<line>ATOM 1056 CA SER A 162 29.369 6.719 37.635 1.00 11.03 C </line>
<line>ATOM 1062 CA SER A 163 27.016 9.494 36.537 1.00 7.45 C </line>
<line>ATOM 1068 CA THR A 164 26.231 8.927 32.851 1.00 5.81 C </line>
<line>ATOM 1075 CA VAL A 165 24.487 12.331 32.526 1.00 9.74 C </line>
</atom-coordinate>
<distance-map>
<line> VAL THR SER SER SER GLY SER THR GLY GLU ASN GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 5.36 8.40 10.40 13.91 16.18 16.96 14.57 12.11 10.49 8.88 7.06 3.73 </line>
<line>GLY CA 5.63 7.35 10.48 13.43 15.91 15.94 12.96 10.59 8.32 5.83 3.83 </line>
<line>ASN CA 8.17 8.16 11.67 13.82 15.87 15.03 11.82 9.10 5.88 3.79 </line>
<line>GLU CA 7.46 5.76 9.41 10.81 12.97 11.81 8.35 6.28 3.83 </line>
<line>GLY CA 9.17 6.86 9.54 10.33 11.40 9.80 6.93 3.72 </line>
<line>THR CA 9.33 6.12 7.49 7.25 7.80 6.14 3.74 </line>
<line>SER CA 10.66 6.88 7.37 5.40 6.07 3.74 </line>
<line>GLY CA 12.95 9.46 8.46 5.51 3.75 </line>
<line>SER CA 11.85 9.02 6.58 3.72 </line>
<line>SER CA 9.02 6.13 3.80 </line>
<line>SER CA 5.53 3.81 </line>
<line>THR CA 3.84 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ALA CA 513</line>
<line>GLY CA 446</line>
<line>ASN CA 359</line>
<line>GLU CA 287</line>
<line>GLY CA 270</line>
<line>THR CA 233</line>
<line>SER CA 162</line>
<line>GLY CA 131</line>
<line>SER CA 145</line>
<line>SER CA 185</line>
<line>SER CA 280</line>
<line>THR CA 312</line>
<line>VAL CA 401</line>
</n14>
</entryChain>
<parallel>
<x>-0.04699999839067459</x>
<y>-1.6799999475479126</y>
<z>5.260000228881836</z>
</parallel>
<rotation>
<x>-0.24500000476837158</x>
<y>-0.6589999794960022</y>
<z>0.7110000252723694</z>
<x>-0.7839999794960022</x>
<y>-0.29600000381469727</y>
<z>-0.5450000166893005</z>
<x>0.5699999928474426</x>
<y>-0.6909999847412109</y>
<z>-0.4440000057220459</z>
</rotation>
<rmsd>3.0916430950164795</rmsd>
<dmax>6.453779220581055</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4V</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2G4VA</entryIDChain>
<sequence>YLMTL-GKTTA</sequence>
<secondary-structure>HHHH - H</secondary-structure>
<atom-coordinate>
<line>ATOM 1702 CA TYR A 236 15.639 13.935 13.146 1.00 3.86 C </line>
<line>ATOM 1714 CA LEU A 237 17.180 10.780 11.714 1.00 6.00 C </line>
<line>ATOM 1722 CA MET A 238 13.830 9.068 11.266 1.00 6.45 C </line>
<line>ATOM 1730 CA THR A 239 12.534 12.147 9.288 1.00 3.82 C </line>
<line>ATOM 1737 CA LEU A 240 15.636 11.681 7.109 1.00 4.06 C </line>
<line>ATOM 1745 CA GLY A 241 14.736 8.030 6.442 1.00 5.41 C </line>
<line>ATOM 1749 CA LYS A 242 18.080 6.943 7.905 1.00 5.92 C </line>
<line>ATOM 1758 CA THR A 243 16.592 4.692 10.587 1.00 6.75 C </line>
<line>ATOM 1765 CA THR A 244 13.365 3.477 12.322 1.00 9.70 C </line>
<line>ATOM 1772 CA ALA A 245 12.135 3.230 15.950 1.00 8.41 C </line>
</atom-coordinate>
<distance-map>
<line> ALA THR THR LYS GLY LEU THR MET LEU TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 11.61 10.73 9.64 9.07 8.98 6.44 5.27 5.52 3.79 </line>
<line>LEU CA 10.02 8.26 6.22 5.48 6.43 4.94 5.42 3.79 </line>
<line>MET CA 7.67 5.71 5.22 5.82 5.02 5.23 3.88 </line>
<line>THR CA 11.14 9.22 8.59 7.73 5.47 3.82 </line>
<line>LEU CA 12.72 9.98 7.86 5.39 3.82 </line>
<line>GLY CA 10.96 7.56 5.64 3.81 </line>
<line>LYS CA 10.67 7.33 3.80 </line>
<line>THR CA 7.12 3.86 </line>
<line>THR CA 3.84 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>TYR CA 490</line>
<line>LEU CA 444</line>
<line>MET CA 367</line>
<line>THR CA 338</line>
<line>LEU CA 303</line>
<line>GLY CA 235</line>
<line>LYS CA 269</line>
<line>THR CA 285</line>
<line>THR CA 307</line>
<line>ALA CA 376</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DUI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DUIA</entryIDChain>
<sequence>LILSKHPNWTN</sequence>
<secondary-structure>HHHHH H</secondary-structure>
<atom-coordinate>
<line>ATOM 1538 CA LEU A 233 1.979 25.447 30.174 1.00 12.06 C </line>
<line>ATOM 1546 CA ILE A 234 2.997 26.595 33.568 1.00 7.14 C </line>
<line>ATOM 1554 CA LEU A 235 4.132 29.932 32.162 1.00 14.77 C </line>
<line>ATOM 1562 CA SER A 236 0.846 30.531 30.253 1.00 8.33 C </line>
<line>ATOM 1568 CA LYS A 237 -0.976 30.167 33.540 1.00 13.05 C </line>
<line>ATOM 1577 CA HIS A 238 1.511 32.162 35.487 1.00 11.28 C </line>
<line>ATOM 1587 CA PRO A 239 3.273 34.525 33.280 1.00 14.88 C </line>
<line>ATOM 1594 CA ASN A 240 4.821 36.362 36.127 1.00 14.56 C </line>
<line>ATOM 1602 CA TRP A 241 6.575 33.358 37.550 1.00 16.04 C </line>
<line>ATOM 1616 CA THR A 242 10.269 33.319 37.184 1.00 13.55 C </line>
<line>ATOM 1623 CA ASN A 243 12.188 30.376 35.686 1.00 18.67 C </line>
</atom-coordinate>
<distance-map>
<line> ASN THR TRP ASN PRO HIS LYS SER LEU ILE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.61 13.41 11.75 12.75 9.68 8.58 6.51 5.21 5.36 3.72 </line>
<line>ILE CA 10.16 10.54 8.63 10.26 7.94 6.07 5.34 5.58 3.79 </line>
<line>LEU CA 8.80 8.62 6.84 7.59 4.80 4.79 5.30 3.85 </line>
<line>SER CA 12.58 12.03 9.70 9.18 5.57 5.52 3.78 </line>
<line>LYS CA 13.34 12.23 9.13 8.87 6.09 3.74 </line>
<line>HIS CA 10.83 9.00 5.60 5.39 3.68 </line>
<line>PRO CA 10.12 8.10 5.52 3.73 </line>
<line>ASN CA 9.50 6.33 3.76 </line>
<line>TRP CA 6.62 3.71 </line>
<line>THR CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 470</line>
<line>ILE CA 465</line>
<line>LEU CA 415</line>
<line>SER CA 354</line>
<line>LYS CA 315</line>
<line>HIS CA 278</line>
<line>PRO CA 276</line>
<line>ASN CA 211</line>
<line>TRP CA 254</line>
<line>THR CA 272</line>
<line>ASN CA 373</line>
</n14>
</entryChain>
<parallel>
<x>12.572999954223633</x>
<y>-21.204999923706055</y>
<z>-23.649999618530273</z>
</parallel>
<rotation>
<x>-0.17499999701976776</x>
<y>-0.7409999966621399</y>
<z>0.6480000019073486</z>
<x>-0.2720000147819519</x>
<y>-0.5960000157356262</y>
<z>-0.7559999823570251</z>
<x>0.9459999799728394</x>
<y>-0.30799999833106995</y>
<z>-0.09700000286102295</z>
</rotation>
<rmsd>1.8598140478134155</rmsd>
<dmax>3.594451904296875</dmax>
</indel>