NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DUIA-2V8BA
confEVID 1DUIA-2V8BA
pdbIDA 1DUI
pdbIDB 2V8B
pdbChainA A
pdbChainB A
identity 0.322899997234344
indelSize 3
alignment <alignment>
<seq1>--AKCVSYGVSQIKAPALHS-----QGYTGSNVKVAVIDSGIDSSHP----DLNVAGGASFVPSETNPFQDNNSHGTHVAGTVLA----VAPSASLYAVKVLGADGSGQYSWIINGIEWAIAN-------NMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSICSTLPGNKYGAKSGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTK---LGNSFYYGKGLINVQAAAQ</seq1>
<seq2>AAQTNAPWGLARISSTSPGTSTYYYDESAGQGSCVYVIDTGIEASHPEFEGRAQMVK--TYYY---SS-RDGNGHGTHCAGTVGSRTYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-YSSSVNSAAARLQSSGVMVAVAAGNNN---ADARNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDLSNIPFGTVNLLAYNNYQA-</seq2>
<ss_1>-- HHHH HHHH ----- EEEE ---- EE EEE HHHHHHHHHHH----H EEEEEE HHHHHHHHHHHHH ------- EEEE HHHHHHHHHHHH EEEE EEEEEE EEE EEEEE EEEEE HHHHHHHHHHHHHHHHHH HHHHHHHHGGG --- HHHH HHHH </ss_1>
<ss_2> HHHGGG EEEE -- --- - HHHHHHHHHH EEEEEE HHHHHHHHHHHHHGGGG EEEEE - HHHHHHHHHHHH EEEE --- GGEEE EEEEEE EEE EEEEE EEEEE HHHHHHHHHHHHHHHHH - HHHHHHHHHH EEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1DUI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DUIA</entryIDChain>
<sequence>GTVLA----VAPSA</sequence>
<secondary-structure>HHHHH----H </secondary-structure>
<atom-coordinate>
<line>ATOM 497 CA GLY A 70 6.067 18.270 17.612 1.00 10.48 C </line>
<line>ATOM 501 CA THR A 71 6.270 16.871 21.107 1.00 7.62 C </line>
<line>ATOM 508 CA VAL A 72 6.552 20.282 22.662 1.00 1.49 C </line>
<line>ATOM 515 CA LEU A 73 3.545 21.368 20.640 1.00 6.13 C </line>
<line>ATOM 523 CA ALA A 74 1.644 18.294 21.741 1.00 8.76 C </line>
<line>ATOM 528 CA VAL A 84 2.177 19.209 25.302 1.00 5.61 C </line>
<line>ATOM 535 CA ALA A 85 1.607 22.993 24.592 1.00 7.79 C </line>
<line>ATOM 540 CA PRO A 86 -0.152 23.401 21.346 1.00 14.00 C </line>
<line>ATOM 547 CA SER A 87 -0.171 27.173 21.425 1.00 13.48 C </line>
<line>ATOM 553 CA ALA A 88 3.468 27.720 22.265 1.00 7.62 C </line>
</atom-coordinate>
<distance-map>
<line> ALA SER PRO ALA VAL ALA LEU VAL THR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 10.85 11.52 8.89 9.54 8.67 6.05 5.01 5.46 3.77 </line>
<line>THR CA 11.26 12.15 9.16 8.45 6.31 4.88 5.28 3.76 </line>
<line>VAL CA 8.06 9.71 7.51 5.96 5.22 5.37 3.78 </line>
<line>LEU CA 6.56 6.94 4.28 4.69 5.32 3.78 </line>
<line>ALA CA 9.62 9.07 5.43 5.50 3.72 </line>
<line>VAL CA 9.13 9.16 6.22 3.89 </line>
<line>ALA CA 5.59 5.54 3.71 </line>
<line>PRO CA 5.71 3.77 </line>
<line>SER CA 3.77 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>GLY CA 522</line>
<line>THR CA 568</line>
<line>VAL CA 588</line>
<line>LEU CA 500</line>
<line>ALA CA 463</line>
<line>VAL CA 498</line>
<line>ALA CA 461</line>
<line>PRO CA 383</line>
<line>SER CA 319</line>
<line>ALA CA 387</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2V8B</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2V8BA</entryIDChain>
<sequence>GTVGSRTYGVAKKT</sequence>
<secondary-structure>HHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 613 CA GLY A 75 13.219 22.399 24.786 1.00 3.17 C </line>
<line>ATOM 617 CA THR A 76 16.317 20.273 24.174 1.00 2.86 C </line>
<line>ATOM 624 CA VAL A 77 14.259 17.877 22.043 1.00 2.92 C </line>
<line>ATOM 631 CA GLY A 78 12.485 20.419 19.885 1.00 3.85 C </line>
<line>ATOM 635 CA SER A 79 12.573 24.135 20.709 1.00 3.52 C </line>
<line>ATOM 641 CA ARG A 80 13.529 26.555 17.946 1.00 3.82 C </line>
<line>ATOM 652 CA THR A 81 16.730 27.762 19.641 1.00 4.20 C </line>
<line>ATOM 659 CA TYR A 82 17.563 25.036 22.145 1.00 3.48 C </line>
<line>ATOM 671 CA GLY A 83 16.341 21.935 20.336 1.00 3.40 C </line>
<line>ATOM 675 CA VAL A 84 17.862 19.176 18.258 1.00 3.00 C </line>
<line>ATOM 682 CA ALA A 85 14.765 18.487 16.096 1.00 3.47 C </line>
<line>ATOM 687 CA LYS A 86 13.397 21.969 15.519 1.00 3.90 C </line>
<line>ATOM 698 CA ALYS A 87 10.275 20.922 13.550 0.50 4.26 C </line>
<line>ATOM 711 CA THR A 88 9.148 17.853 15.526 1.00 3.56 C </line>
</atom-coordinate>
<distance-map>
<line> THR LYS LYS ALA VAL GLY TYR THR ARG SER GLY VAL THR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 11.09 11.71 9.28 9.65 8.63 5.46 5.73 8.22 8.01 4.48 5.34 5.39 3.81 </line>
<line>THR CA 11.49 12.24 9.29 8.42 6.21 4.18 5.32 8.76 9.27 6.40 5.75 3.81 </line>
<line>VAL CA 8.28 9.86 7.75 6.00 5.38 4.87 7.89 10.47 9.62 6.62 3.78 </line>
<line>GLY CA 6.06 6.73 4.72 4.83 5.75 4.17 7.23 8.49 6.52 3.81 </line>
<line>SER CA 8.84 8.18 5.68 7.61 7.65 4.38 5.27 5.62 3.80 </line>
<line>ARG CA 10.04 7.85 5.19 8.37 8.56 5.91 6.02 3.82 </line>
<line>THR CA 13.14 11.21 7.85 10.12 8.77 5.88 3.79 </line>
<line>TYR CA 12.89 12.00 8.41 9.34 7.04 3.79 </line>
<line>GLY CA 9.57 9.16 5.65 5.69 3.77 </line>
<line>VAL CA 9.23 9.10 5.94 3.84 </line>
<line>ALA CA 5.68 5.71 3.79 </line>
<line>LYS CA 5.92 3.84 </line>
<line>LYS CA 3.82 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLY CA 575</line>
<line>THR CA 611</line>
<line>VAL CA 629</line>
<line>GLY CA 555</line>
<line>SER CA 482</line>
<line>ARG CA 403</line>
<line>THR CA 386</line>
<line>TYR CA 494</line>
<line>GLY CA 558</line>
<line>VAL CA 583</line>
<line>ALA CA 535</line>
<line>LYS CA 456</line>
<line>LYS CA 402</line>
<line>THR CA 453</line>
</n14>
</entryChain>
<parallel>
<x>-10.895999908447266</x>
<y>-0.5059999823570251</y>
<z>1.690999984741211</z>
</parallel>
<rotation>
<x>-0.09300000220537186</x>
<y>-0.6600000262260437</y>
<z>0.7450000047683716</z>
<x>-0.6779999732971191</x>
<y>-0.5070000290870667</y>
<z>-0.5329999923706055</z>
<x>0.7300000190734863</x>
<y>-0.5540000200271606</y>
<z>-0.4000000059604645</z>
</rotation>
<rmsd>1.4486479759216309</rmsd>
<dmax>3.412830114364624</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2V8B</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2V8BA</entryIDChain>
<sequence>AGNNN---ADARN</sequence>
<secondary-structure> --- GGE</secondary-structure>
<atom-coordinate>
<line>ATOM 1258 CA ALA A 159 21.087 6.589 32.916 1.00 4.34 C </line>
<line>ATOM 1263 CA GLY A 160 20.819 8.404 36.257 1.00 4.55 C </line>
<line>ATOM 1267 CA ASN A 161 22.934 10.788 38.284 1.00 5.30 C </line>
<line>ATOM 1275 CA ASN A 162 24.481 8.543 40.956 1.00 7.77 C </line>
<line>ATOM 1283 CA ASN A 163 28.007 8.172 39.522 1.00 5.70 C </line>
<line>ATOM 1291 CA ALA A 164 27.259 4.452 39.733 1.00 6.68 C </line>
<line>ATOM 1296 CA ASP A 165 26.432 1.440 37.584 1.00 6.15 C </line>
<line>ATOM 1304 CA ALA A 166 23.043 1.969 35.946 1.00 4.81 C </line>
<line>ATOM 1311 CA AARG A 167 22.182 -1.712 36.432 0.60 6.19 C </line>
<line>ATOM 1330 CA AASN A 168 20.574 -0.735 39.784 0.50 5.14 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ARG ALA ASP ALA ASN ASN ASN GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 10.05 9.08 5.86 8.77 9.44 9.70 8.94 7.06 3.81 </line>
<line>GLY CA 9.80 10.21 6.82 9.04 8.32 7.90 5.96 3.78 </line>
<line>ASN CA 11.86 12.66 9.12 10.01 7.81 5.84 3.82 </line>
<line>ASN CA 10.14 11.44 8.39 8.10 5.09 3.82 </line>
<line>ASN CA 11.60 11.88 8.71 7.18 3.80 </line>
<line>ALA CA 8.46 8.64 6.19 3.79 </line>
<line>ASP CA 6.62 5.42 3.80 </line>
<line>ALA CA 5.30 3.81 </line>
<line>ARG CA 3.84 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>ALA CA 507</line>
<line>GLY CA 423</line>
<line>ASN CA 350</line>
<line>ASN CA 260</line>
<line>ASN CA 277</line>
<line>ALA CA 279</line>
<line>ASP CA 312</line>
<line>ALA CA 376</line>
<line>ARG CA 307</line>
<line>ASN CA 260</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DUI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DUIA</entryIDChain>
<sequence>AGNEGTSGSSSTV</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 1003 CA ALA A 153 19.781 13.688 30.359 1.00 6.61 C </line>
<line>ATOM 1008 CA GLY A 154 21.410 11.414 27.896 1.00 7.66 C </line>
<line>ATOM 1012 CA ASN A 155 21.024 7.803 26.671 1.00 5.62 C </line>
<line>ATOM 1020 CA GLU A 156 24.158 6.283 28.170 1.00 11.21 C </line>
<line>ATOM 1029 CA GLY A 157 22.654 3.596 30.440 1.00 1.00 C </line>
<line>ATOM 1033 CA THR A 158 24.630 3.057 33.543 1.00 11.05 C </line>
<line>ATOM 1040 CA SER A 159 28.221 2.532 34.428 1.00 11.45 C </line>
<line>ATOM 1046 CA GLY A 160 28.527 1.287 37.941 1.00 7.72 C </line>
<line>ATOM 1050 CA SER A 161 28.429 4.244 40.246 1.00 19.37 C </line>
<line>ATOM 1056 CA SER A 162 29.369 6.719 37.635 1.00 11.03 C </line>
<line>ATOM 1062 CA SER A 163 27.016 9.494 36.537 1.00 7.45 C </line>
<line>ATOM 1068 CA THR A 164 26.231 8.927 32.851 1.00 5.81 C </line>
<line>ATOM 1075 CA VAL A 165 24.487 12.331 32.526 1.00 9.74 C </line>
</atom-coordinate>
<distance-map>
<line> VAL THR SER SER SER GLY SER THR GLY GLU ASN GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 5.36 8.40 10.40 13.91 16.18 16.96 14.57 12.11 10.49 8.88 7.06 3.73 </line>
<line>GLY CA 5.63 7.35 10.48 13.43 15.91 15.94 12.96 10.59 8.32 5.83 3.83 </line>
<line>ASN CA 8.17 8.16 11.67 13.82 15.87 15.03 11.82 9.10 5.88 3.79 </line>
<line>GLU CA 7.46 5.76 9.41 10.81 12.97 11.81 8.35 6.28 3.83 </line>
<line>GLY CA 9.17 6.86 9.54 10.33 11.40 9.80 6.93 3.72 </line>
<line>THR CA 9.33 6.12 7.49 7.25 7.80 6.14 3.74 </line>
<line>SER CA 10.66 6.88 7.37 5.40 6.07 3.74 </line>
<line>GLY CA 12.95 9.46 8.46 5.51 3.75 </line>
<line>SER CA 11.85 9.02 6.58 3.72 </line>
<line>SER CA 9.02 6.13 3.80 </line>
<line>SER CA 5.53 3.81 </line>
<line>THR CA 3.84 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ALA CA 513</line>
<line>GLY CA 446</line>
<line>ASN CA 359</line>
<line>GLU CA 287</line>
<line>GLY CA 270</line>
<line>THR CA 233</line>
<line>SER CA 162</line>
<line>GLY CA 131</line>
<line>SER CA 145</line>
<line>SER CA 185</line>
<line>SER CA 280</line>
<line>THR CA 312</line>
<line>VAL CA 401</line>
</n14>
</entryChain>
<parallel>
<x>0.02800000086426735</x>
<y>-1.6100000143051147</y>
<z>5.406000137329102</z>
</parallel>
<rotation>
<x>-0.24199999868869781</x>
<y>-0.6650000214576721</y>
<z>0.7059999704360962</z>
<x>-0.7889999747276306</x>
<y>-0.289000004529953</y>
<z>-0.5429999828338623</z>
<x>0.5649999976158142</x>
<y>-0.6880000233650208</y>
<z>-0.45500001311302185</z>
</rotation>
<rmsd>3.076436996459961</rmsd>
<dmax>6.424499034881592</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2V8B</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2V8BA</entryIDChain>
<sequence>YLMTL-GKTTA</sequence>
<secondary-structure>HHHH - H</secondary-structure>
<atom-coordinate>
<line>ATOM 1844 CA TYR A 236 15.681 13.880 13.269 1.00 3.81 C </line>
<line>ATOM 1856 CA LEU A 237 17.251 10.701 11.858 1.00 4.11 C </line>
<line>ATOM 1866 CA AMET A 238 13.836 9.005 11.490 0.70 4.84 C </line>
<line>ATOM 1877 CA THR A 239 12.531 12.002 9.506 1.00 4.71 C </line>
<line>ATOM 1884 CA LEU A 240 15.583 11.635 7.227 1.00 5.38 C </line>
<line>ATOM 1892 CA GLY A 241 14.661 7.958 6.706 1.00 6.38 C </line>
<line>ATOM 1898 CA ALYS A 242 18.090 6.841 7.992 0.70 6.83 C </line>
<line>ATOM 1911 CA THR A 243 16.704 4.576 10.688 1.00 5.68 C </line>
<line>ATOM 1918 CA THR A 244 13.528 3.394 12.391 1.00 6.60 C </line>
<line>ATOM 1925 CA ALA A 245 12.158 3.422 15.936 1.00 7.16 C </line>
</atom-coordinate>
<distance-map>
<line> ALA THR THR LYS GLY LEU THR MET LEU TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 11.35 10.74 9.71 9.12 8.90 6.45 5.25 5.51 3.82 </line>
<line>LEU CA 9.78 8.22 6.26 5.53 6.39 5.01 5.43 3.83 </line>
<line>MET CA 7.33 5.69 5.34 5.92 4.97 5.30 3.82 </line>
<line>THR CA 10.73 9.13 8.60 7.74 5.36 3.83 </line>
<line>LEU CA 12.45 9.94 7.94 5.46 3.83 </line>
<line>GLY CA 10.58 7.38 5.61 3.83 </line>
<line>LYS CA 10.49 7.21 3.78 </line>
<line>THR CA 7.04 3.79 </line>
<line>THR CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>TYR CA 495</line>
<line>LEU CA 447</line>
<line>MET CA 373</line>
<line>THR CA 339</line>
<line>LEU CA 305</line>
<line>GLY CA 241</line>
<line>LYS CA 270</line>
<line>THR CA 278</line>
<line>THR CA 305</line>
<line>ALA CA 375</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DUI</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1DUIA</entryIDChain>
<sequence>LILSKHPNWTN</sequence>
<secondary-structure>HHHHH H</secondary-structure>
<atom-coordinate>
<line>ATOM 1538 CA LEU A 233 1.979 25.447 30.174 1.00 12.06 C </line>
<line>ATOM 1546 CA ILE A 234 2.997 26.595 33.568 1.00 7.14 C </line>
<line>ATOM 1554 CA LEU A 235 4.132 29.932 32.162 1.00 14.77 C </line>
<line>ATOM 1562 CA SER A 236 0.846 30.531 30.253 1.00 8.33 C </line>
<line>ATOM 1568 CA LYS A 237 -0.976 30.167 33.540 1.00 13.05 C </line>
<line>ATOM 1577 CA HIS A 238 1.511 32.162 35.487 1.00 11.28 C </line>
<line>ATOM 1587 CA PRO A 239 3.273 34.525 33.280 1.00 14.88 C </line>
<line>ATOM 1594 CA ASN A 240 4.821 36.362 36.127 1.00 14.56 C </line>
<line>ATOM 1602 CA TRP A 241 6.575 33.358 37.550 1.00 16.04 C </line>
<line>ATOM 1616 CA THR A 242 10.269 33.319 37.184 1.00 13.55 C </line>
<line>ATOM 1623 CA ASN A 243 12.188 30.376 35.686 1.00 18.67 C </line>
</atom-coordinate>
<distance-map>
<line> ASN THR TRP ASN PRO HIS LYS SER LEU ILE LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 12.61 13.41 11.75 12.75 9.68 8.58 6.51 5.21 5.36 3.72 </line>
<line>ILE CA 10.16 10.54 8.63 10.26 7.94 6.07 5.34 5.58 3.79 </line>
<line>LEU CA 8.80 8.62 6.84 7.59 4.80 4.79 5.30 3.85 </line>
<line>SER CA 12.58 12.03 9.70 9.18 5.57 5.52 3.78 </line>
<line>LYS CA 13.34 12.23 9.13 8.87 6.09 3.74 </line>
<line>HIS CA 10.83 9.00 5.60 5.39 3.68 </line>
<line>PRO CA 10.12 8.10 5.52 3.73 </line>
<line>ASN CA 9.50 6.33 3.76 </line>
<line>TRP CA 6.62 3.71 </line>
<line>THR CA 3.82 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LEU CA 470</line>
<line>ILE CA 465</line>
<line>LEU CA 415</line>
<line>SER CA 354</line>
<line>LYS CA 315</line>
<line>HIS CA 278</line>
<line>PRO CA 276</line>
<line>ASN CA 211</line>
<line>TRP CA 254</line>
<line>THR CA 272</line>
<line>ASN CA 373</line>
</n14>
</entryChain>
<parallel>
<x>12.586000442504883</x>
<y>-21.290000915527344</y>
<z>-23.489999771118164</z>
</parallel>
<rotation>
<x>-0.1509999930858612</x>
<y>-0.7409999966621399</y>
<z>0.6549999713897705</z>
<x>-0.2849999964237213</x>
<y>-0.6010000109672546</y>
<z>-0.7459999918937683</z>
<x>0.9459999799728394</x>
<y>-0.30000001192092896</y>
<z>-0.12099999934434891</z>
</rotation>
<rmsd>1.8381340503692627</rmsd>
<dmax>3.5690488815307617</dmax>
</indel>