NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
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Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1DUXC-1MD0B
confEVID 1DUXC-1MD0B
pdbIDA 1DUX
pdbIDB 1MD0
pdbChainA C
pdbChainB B
identity 0.604700028896332
indelSize 1
alignment <alignment>
<seq1>-----------------------------------VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFVSYPE------------------</seq1>
<seq2>PKGTFKDYVRDRADLNKDKPVIPAAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTG-DGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLLGYTPEELHAMLDVKP</seq2>
<ss_1>----------------------------------- HHHHHHHHHHH EEEEE HHHHHHHHHH HHHHHHHHHH EEE EEEEEE ------------------</ss_1>
<ss_2> HHHHHHHHHH HHHHHH HHHHHHHHH GGG -EEEEEE HHHHHHHHHHH HHHHHHHHHHHHH EEE EEEE HHHHH HHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1MD0</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1MD0B</entryIDChain>
<sequence>ISWTG-DGWEF</sequence>
<secondary-structure> -EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1671 CA ILE B 354 52.311 18.689 6.770 1.00 24.15 C </line>
<line>ATOM 1679 CA SER B 355 54.244 15.620 7.875 1.00 22.53 C </line>
<line>ATOM 1685 CA TRP B 356 57.365 14.120 9.423 1.00 22.34 C </line>
<line>ATOM 1699 CA THR B 357 60.007 13.312 6.819 1.00 23.98 C </line>
<line>ATOM 1706 CA GLY B 358 61.079 10.265 8.788 1.00 26.28 C </line>
<line>ATOM 1710 CA ASP B 359 64.400 11.837 9.730 1.00 26.02 C </line>
<line>ATOM 1718 CA GLY B 360 64.278 12.536 13.456 1.00 25.20 C </line>
<line>ATOM 1722 CA TRP B 361 62.249 15.667 14.195 1.00 23.06 C </line>
<line>ATOM 1736 CA GLU B 362 62.333 16.923 10.599 1.00 23.42 C </line>
<line>ATOM 1745 CA PHE B 363 59.069 17.812 8.841 1.00 22.12 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLU TRP GLY ASP GLY THR TRP SER ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 7.12 10.87 12.77 15.03 14.21 12.33 9.39 7.31 3.79 </line>
<line>SER CA 5.39 8.63 10.20 11.89 11.00 8.73 6.30 3.79 </line>
<line>TRP CA 4.11 5.82 7.00 8.16 7.40 5.39 3.80 </line>
<line>THR CA 5.02 5.72 8.06 7.93 5.47 3.78 </line>
<line>GLY CA 7.81 7.01 7.73 6.10 3.79 </line>
<line>ASP CA 8.06 5.56 6.26 3.79 </line>
<line>GLY CA 8.73 5.58 3.80 </line>
<line>TRP CA 6.59 3.81 </line>
<line>GLU CA 3.81 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ILE CA 421</line>
<line>SER CA 430</line>
<line>TRP CA 407</line>
<line>THR CA 324</line>
<line>GLY CA 262</line>
<line>ASP CA 254</line>
<line>GLY CA 297</line>
<line>TRP CA 401</line>
<line>GLU CA 385</line>
<line>PHE CA 447</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1DUX</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1DUXC</entryIDChain>
<sequence>ISWTSRDGGEF</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1220 CA ILE C 24 -4.460 8.374 3.259 1.00 17.21 C </line>
<line>ATOM 1228 CA SER C 25 -7.997 9.095 2.072 1.00 17.94 C </line>
<line>ATOM 1234 CA TRP C 26 -11.609 8.995 3.205 1.00 18.95 C </line>
<line>ATOM 1248 CA THR C 27 -13.467 6.238 1.352 1.00 22.12 C </line>
<line>ATOM 1255 CA SER C 28 -16.863 7.188 2.758 1.00 26.30 C </line>
<line>ATOM 1261 CA ARG C 29 -16.448 10.241 4.973 1.00 30.50 C </line>
<line>ATOM 1272 CA ASP C 30 -20.139 10.229 5.888 1.00 33.17 C </line>
<line>ATOM 1280 CA GLY C 31 -19.459 6.860 7.515 1.00 27.49 C </line>
<line>ATOM 1284 CA GLY C 32 -16.059 7.753 8.962 1.00 22.17 C </line>
<line>ATOM 1288 CA GLU C 33 -14.431 5.162 6.719 1.00 19.66 C </line>
<line>ATOM 1297 CA PHE C 34 -10.918 5.780 5.392 1.00 17.27 C </line>
</atom-coordinate>
<distance-map>
<line> PHE GLU GLY GLY ASP ARG SER THR TRP SER ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 7.28 11.03 12.94 15.66 16.01 12.25 12.47 9.45 7.18 3.80 </line>
<line>SER CA 5.53 8.86 10.69 12.88 12.78 9.01 9.09 6.21 3.79 </line>
<line>TRP CA 3.95 5.92 7.38 9.21 9.03 5.30 5.57 3.81 </line>
<line>THR CA 4.80 5.56 8.18 8.62 9.00 6.17 3.80 </line>
<line>SER CA 6.65 5.07 6.28 5.43 5.46 3.79 </line>
<line>ARG CA 7.12 5.74 4.72 5.19 3.80 </line>
<line>ASP CA 10.25 7.68 5.68 3.80 </line>
<line>GLY CA 8.87 5.37 3.80 </line>
<line>GLY CA 6.56 3.79 </line>
<line>GLU CA 3.81 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>ILE CA 380</line>
<line>SER CA 340</line>
<line>TRP CA 324</line>
<line>THR CA 267</line>
<line>SER CA 229</line>
<line>ARG CA 241</line>
<line>ASP CA 166</line>
<line>GLY CA 210</line>
<line>GLY CA 306</line>
<line>GLU CA 330</line>
<line>PHE CA 399</line>
</n14>
</entryChain>
<parallel>
<x>73.24800109863281</x>
<y>5.914000034332275</y>
<z>5.25600004196167</z>
</parallel>
<rotation>
<x>-0.843999981880188</x>
<y>0.5260000228881836</y>
<z>-0.10599999874830246</z>
<x>0.492000013589859</x>
<y>0.6809999942779541</y>
<z>-0.5429999828338623</z>
<x>0.21299999952316284</x>
<y>0.5099999904632568</y>
<z>0.8330000042915344</z>
</rotation>
<rmsd>1.7739650011062622</rmsd>
<dmax>3.2875359058380127</dmax>
</indel>