NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
2A3TA-2PPDA
confEVID 2A3TA-2PPDA
pdbIDA 2A3T
pdbIDB 2PPD
pdbChainA A
pdbChainB A
identity 0.64740002155304
indelSize 2
alignment <alignment>
<seq1>--------LPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDE-DAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGSAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWDNDLMEQVVAPVG</seq1>
<seq2>ATAAEIAALPRQKVELVDPPFVHAHSQVAEGGPKVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTEINPGEKTILRFKATKPGVFVYHCAPPG-MVPWAVVSGMNGAIMVLPREGLHDGKGKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGDAYEDTVKVMRTLTPTHVVFNGAVGALTGDKAMTAAVGEKVLIVHSQANRDTRPHLIGGHGDYVWATGKFNTPPDVDQETWFIPGGAAGAAFYTFQQPGIYAYVNHNLIEAFELGAAAHFKVTGEWNDDLMTSVLAPSG</seq2>
<ss_1>-------- EEEEEEEEE EE - EEEE EEEE EEEEEEEEE EE GGG EEEEEEEEE EEEEEE GGGHHHH EEEEEEEE EEEEEEEEEE HHHHHHHH EEE GGG EEEE EEEEEEEEE EEEEEE EEEEE EEEEEEEEE EEEEEEEEEHHHH EEEEEEEE </ss_1>
<ss_2> HHHHH EEEEEEEEEEEEEEE EEEEEGGG EEEE EEEEEEEEE EE HHHH EEEEEEEEE EEEEEE - HHHH EEEEEEEE EEEEEEEEEE HHHHHHHHHHHH EEEE GGG EEEE EEEEEEEEE EEEEEE EEEEE EEEEEEEEE EEEEEEEEEHHHH EEEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2A3T</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2A3TA</entryIDChain>
<sequence>VQLDE-DAYLQ</sequence>
<secondary-structure> EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 308 CA VAL A 82 41.581 45.404 -15.880 1.00 24.51 C </line>
<line>ATOM 315 CA GLN A 83 44.614 43.474 -16.931 1.00 22.69 C </line>
<line>ATOM 324 CA LEU A 84 44.657 40.014 -15.318 1.00 22.16 C </line>
<line>ATOM 332 CA ASP A 85 47.824 38.836 -17.054 1.00 25.00 C </line>
<line>ATOM 340 CA GLU A 86 50.149 39.713 -19.949 1.00 31.32 C </line>
<line>ATOM 349 CA ASP A 87 47.607 39.223 -22.733 1.00 30.86 C </line>
<line>ATOM 357 CA ALA A 88 44.468 38.697 -20.630 1.00 24.48 C </line>
<line>ATOM 362 CA TYR A 89 41.981 41.454 -19.731 1.00 22.57 C </line>
<line>ATOM 374 CA LEU A 90 38.745 41.395 -17.728 1.00 21.94 C </line>
<line>ATOM 382 CA GLN A 91 35.759 43.686 -18.213 1.00 23.45 C </line>
</atom-coordinate>
<distance-map>
<line> GLN LEU TYR ALA ASP GLU ASP LEU GLN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.50 5.25 5.53 8.71 11.02 11.06 9.14 6.23 3.75 </line>
<line>GLN CA 8.95 6.28 4.34 6.04 7.79 7.34 5.64 3.82 </line>
<line>LEU CA 10.05 6.53 5.36 5.48 8.02 7.19 3.80 </line>
<line>ASP CA 13.05 9.46 6.94 4.91 5.70 3.82 </line>
<line>GLU CA 15.03 11.74 8.35 5.81 3.80 </line>
<line>ASP CA 13.44 10.41 6.76 3.81 </line>
<line>ALA CA 10.32 6.96 3.82 </line>
<line>TYR CA 6.78 3.81 </line>
<line>LEU CA 3.79 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>VAL CA 354</line>
<line>GLN CA 313</line>
<line>LEU CA 385</line>
<line>ASP CA 307</line>
<line>GLU CA 196</line>
<line>ASP CA 230</line>
<line>ALA CA 316</line>
<line>TYR CA 366</line>
<line>LEU CA 455</line>
<line>GLN CA 428</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2PPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2PPDA</entryIDChain>
<sequence>IVIDDAGTEVH</sequence>
<secondary-structure>EEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 358 CA ILE A 50 37.434 15.533 48.749 1.00 24.26 C </line>
<line>ATOM 366 CA VAL A 51 39.123 17.333 45.890 1.00 23.57 C </line>
<line>ATOM 373 CA ILE A 52 37.135 20.408 44.823 1.00 23.15 C </line>
<line>ATOM 381 CA ASP A 53 39.052 21.941 41.900 1.00 27.18 C </line>
<line>ATOM 389 CA ASP A 54 41.469 21.164 39.017 1.00 32.85 C </line>
<line>ATOM 397 CA ALA A 55 44.503 22.077 41.149 1.00 32.19 C </line>
<line>ATOM 402 CA GLY A 56 44.012 19.211 43.631 1.00 29.58 C </line>
<line>ATOM 406 CA THR A 57 42.612 21.456 46.388 1.00 26.69 C </line>
<line>ATOM 413 CA GLU A 58 41.346 19.370 49.321 1.00 27.64 C </line>
<line>ATOM 422 CA VAL A 59 38.612 19.871 51.896 1.00 24.96 C </line>
<line>ATOM 429 CA HIS A 60 37.835 17.658 54.850 1.00 22.74 C </line>
</atom-coordinate>
<distance-map>
<line> HIS VAL GLU THR GLY ALA ASP ASP ILE VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.47 5.49 5.51 8.21 9.11 12.27 11.95 9.52 6.27 3.78 </line>
<line>VAL CA 9.06 6.54 4.57 5.42 5.70 8.60 8.21 6.10 3.81 </line>
<line>ILE CA 10.42 7.25 6.25 5.79 7.08 8.40 7.28 3.82 </line>
<line>ASP CA 13.69 10.22 8.18 5.75 5.92 5.50 3.84 </line>
<line>ASP CA 16.62 13.26 10.46 7.46 5.62 3.82 </line>
<line>ALA CA 15.87 12.45 9.17 5.60 3.82 </line>
<line>GLY CA 12.90 9.89 6.29 3.82 </line>
<line>THR CA 10.43 6.99 3.82 </line>
<line>GLU CA 6.77 3.79 </line>
<line>VAL CA 3.77 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>ILE CA 330</line>
<line>VAL CA 294</line>
<line>ILE CA 367</line>
<line>ASP CA 301</line>
<line>ASP CA 197</line>
<line>ALA CA 189</line>
<line>GLY CA 210</line>
<line>THR CA 301</line>
<line>GLU CA 347</line>
<line>VAL CA 432</line>
<line>HIS CA 422</line>
</n14>
</entryChain>
<parallel>
<x>5.086999893188477</x>
<y>21.299999237060547</y>
<z>-63.49300003051758</z>
</parallel>
<rotation>
<x>0.03799999877810478</x>
<y>-0.10100000351667404</y>
<z>-0.9940000176429749</z>
<x>-0.054999999701976776</x>
<y>-0.9940000176429749</y>
<z>0.0989999994635582</z>
<x>-0.9980000257492065</x>
<y>0.050999999046325684</y>
<z>-0.0430000014603138</z>
</rotation>
<rmsd>1.0286099910736084</rmsd>
<dmax>1.7760089635849</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2PPD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2PPDA</entryIDChain>
<sequence>CAPPG-MVPWA</sequence>
<secondary-structure> - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1022 CA CYS A 136 24.329 20.063 60.611 1.00 18.84 C </line>
<line>ATOM 1028 CA ALA A 137 24.466 22.506 63.518 1.00 19.61 C </line>
<line>ATOM 1033 CA PRO A 138 26.702 21.355 66.412 1.00 21.73 C </line>
<line>ATOM 1040 CA PRO A 139 26.592 24.084 69.098 1.00 21.70 C </line>
<line>ATOM 1047 CA GLY A 140 29.808 26.106 69.071 1.00 23.12 C </line>
<line>ATOM 1051 CA MET A 141 30.813 25.062 65.540 1.00 24.76 C </line>
<line>ATOM 1059 CA VAL A 142 27.696 25.682 63.439 1.00 20.72 C </line>
<line>ATOM 1066 CA PRO A 143 29.163 27.635 60.507 1.00 19.52 C </line>
<line>ATOM 1073 CA TRP A 144 32.226 25.394 60.233 1.00 19.10 C </line>
<line>ATOM 1087 CA ALA A 145 30.088 22.263 59.849 1.00 17.82 C </line>
</atom-coordinate>
<distance-map>
<line> ALA TRP PRO VAL MET GLY PRO PRO ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 6.21 9.54 8.98 7.13 9.56 11.75 9.66 6.40 3.80 </line>
<line>ALA CA 6.72 8.91 7.58 4.53 7.13 8.50 6.18 3.83 </line>
<line>PRO CA 7.44 9.22 8.96 5.34 5.60 6.27 3.83 </line>
<line>PRO CA 10.05 10.59 9.64 5.98 5.61 3.80 </line>
<line>GLY CA 9.99 9.19 8.72 6.03 3.82 </line>
<line>MET CA 6.38 5.50 5.89 3.81 </line>
<line>VAL CA 5.50 5.56 3.82 </line>
<line>PRO CA 5.49 3.81 </line>
<line>TRP CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 498</line>
<line>ALA CA 365</line>
<line>PRO CA 321</line>
<line>PRO CA 224</line>
<line>GLY CA 189</line>
<line>MET CA 290</line>
<line>VAL CA 336</line>
<line>PRO CA 374</line>
<line>TRP CA 422</line>
<line>ALA CA 469</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2A3T</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2A3TA</entryIDChain>
<sequence>CAPGGPMIPWH</sequence>
<secondary-structure> GGGHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 954 CA CYS A 167 27.206 42.205 -5.484 1.00 18.48 C </line>
<line>ATOM 960 CA ALA A 168 24.034 40.194 -6.204 1.00 21.64 C </line>
<line>ATOM 965 CA PRO A 169 21.645 42.135 -8.399 1.00 24.91 C </line>
<line>ATOM 972 CA GLY A 170 19.416 39.125 -9.217 1.00 27.93 C </line>
<line>ATOM 976 CA GLY A 171 19.153 36.017 -11.404 1.00 29.12 C </line>
<line>ATOM 980 CA PRO A 172 22.005 35.441 -13.903 1.00 28.51 C </line>
<line>ATOM 987 CA MET A 173 23.481 38.812 -12.861 1.00 27.36 C </line>
<line>ATOM 995 CA ILE A 174 24.508 37.262 -9.549 1.00 23.73 C </line>
<line>ATOM 1003 CA PRO A 175 27.375 34.919 -10.661 1.00 20.69 C </line>
<line>ATOM 1010 CA TRP A 176 28.371 37.311 -13.446 1.00 19.79 C </line>
<line>ATOM 1024 CA HIS A 177 28.890 40.385 -11.239 1.00 17.35 C </line>
</atom-coordinate>
<distance-map>
<line> HIS TRP PRO ILE MET PRO GLY GLY PRO ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 6.27 9.42 8.94 6.95 8.93 11.99 11.76 9.17 6.28 3.82 </line>
<line>ALA CA 7.00 8.92 7.67 4.47 6.82 9.27 8.27 5.62 3.78 </line>
<line>PRO CA 7.98 9.69 9.49 5.77 5.86 8.67 7.26 3.83 </line>
<line>GLY CA 9.77 10.07 9.12 5.43 5.47 6.50 3.81 </line>
<line>GLY CA 10.67 9.53 8.33 5.80 5.35 3.84 </line>
<line>PRO CA 8.89 6.65 6.29 5.34 3.82 </line>
<line>MET CA 5.86 5.15 5.93 3.80 </line>
<line>ILE CA 5.64 5.49 3.87 </line>
<line>PRO CA 5.70 3.80 </line>
<line>TRP CA 3.82 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>CYS CA 508</line>
<line>ALA CA 365</line>
<line>PRO CA 348</line>
<line>GLY CA 240</line>
<line>GLY CA 180</line>
<line>PRO CA 234</line>
<line>MET CA 318</line>
<line>ILE CA 350</line>
<line>PRO CA 379</line>
<line>TRP CA 431</line>
<line>HIS CA 486</line>
</n14>
</entryChain>
<parallel>
<x>4.093999862670898</x>
<y>-14.772000312805176</y>
<z>73.99700164794922</z>
</parallel>
<rotation>
<x>0.11400000005960464</x>
<y>-0.03799999877810478</y>
<z>-0.9929999709129333</z>
<x>0.03700000047683716</x>
<y>-0.9980000257492065</y>
<z>0.041999999433755875</z>
<x>-0.9929999709129333</x>
<y>-0.04100000113248825</y>
<z>-0.11299999803304672</z>
</rotation>
<rmsd>0.6841930150985718</rmsd>
<dmax>1.2805429697036743</dmax>
</indel>