NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
2A3TA-2PPDB
confEVID 2A3TA-2PPDB
pdbIDA 2A3T
pdbIDB 2PPD
pdbChainA A
pdbChainB B
identity 0.64740002155304
indelSize 2
alignment <alignment>
<seq1>--------LPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDE-DAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGSAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWDNDLMEQVVAPVG-</seq1>
<seq2>ATAAEIAALPRQKVELVDPPFVHAHSQVAEGGPKVVEFTMVIEEKKIVIDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTEINPGEKTILRFKATKPGVFVYHCAPPG-MVPWAVVSGMNGAIMVLPREGLHDGKGKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGDAYEDTVKVMRTLTPTHVVFNGAVGALTGDKAMTAAVGEKVLIVHSQANRDTRPHLIGGHGDYVWATGKFNTPPDVDQETWFIPGGAAGAAFYTFQQPGIYAYVNHNLIEAFELGAAAHFKVTGEWNDDLMTSVLAPSGT</seq2>
<ss_1>-------- EEEEEEEEE EE - EEEE EEEE EEEEEEEEE EE GGG EEEEEEEEE EEEEEE GGGHHHH EEEEEEEE EEEEEEEEEE HHHHHHHH EEE GGG EEEE EEEEEEEEE EEEEEE EEEEE EEEEEEEEE EEEEEEEEEHHHH EEEEEEEE -</ss_1>
<ss_2> HHHHH EEEEEEEEEEEEEEE EEEEEGGG EEEE EEEEEEEEE EE HHHH EEEEEEEEE EEEEEE - HHHH EEEEEEEE EEEEEEEEEE HHHHHHHHHHHH EEEE GGG EEEE EEEEEEEEE EEEEEE EEEEE EEEEEEEEE EEEEEEEEEHHHH EEEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2A3T</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2A3TA</entryIDChain>
<sequence>VQLDE-DAYLQ</sequence>
<secondary-structure> EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 308 CA VAL A 82 41.581 45.404 -15.880 1.00 24.51 C </line>
<line>ATOM 315 CA GLN A 83 44.614 43.474 -16.931 1.00 22.69 C </line>
<line>ATOM 324 CA LEU A 84 44.657 40.014 -15.318 1.00 22.16 C </line>
<line>ATOM 332 CA ASP A 85 47.824 38.836 -17.054 1.00 25.00 C </line>
<line>ATOM 340 CA GLU A 86 50.149 39.713 -19.949 1.00 31.32 C </line>
<line>ATOM 349 CA ASP A 87 47.607 39.223 -22.733 1.00 30.86 C </line>
<line>ATOM 357 CA ALA A 88 44.468 38.697 -20.630 1.00 24.48 C </line>
<line>ATOM 362 CA TYR A 89 41.981 41.454 -19.731 1.00 22.57 C </line>
<line>ATOM 374 CA LEU A 90 38.745 41.395 -17.728 1.00 21.94 C </line>
<line>ATOM 382 CA GLN A 91 35.759 43.686 -18.213 1.00 23.45 C </line>
</atom-coordinate>
<distance-map>
<line> GLN LEU TYR ALA ASP GLU ASP LEU GLN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 6.50 5.25 5.53 8.71 11.02 11.06 9.14 6.23 3.75 </line>
<line>GLN CA 8.95 6.28 4.34 6.04 7.79 7.34 5.64 3.82 </line>
<line>LEU CA 10.05 6.53 5.36 5.48 8.02 7.19 3.80 </line>
<line>ASP CA 13.05 9.46 6.94 4.91 5.70 3.82 </line>
<line>GLU CA 15.03 11.74 8.35 5.81 3.80 </line>
<line>ASP CA 13.44 10.41 6.76 3.81 </line>
<line>ALA CA 10.32 6.96 3.82 </line>
<line>TYR CA 6.78 3.81 </line>
<line>LEU CA 3.79 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>VAL CA 354</line>
<line>GLN CA 313</line>
<line>LEU CA 385</line>
<line>ASP CA 307</line>
<line>GLU CA 196</line>
<line>ASP CA 230</line>
<line>ALA CA 316</line>
<line>TYR CA 366</line>
<line>LEU CA 455</line>
<line>GLN CA 428</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2PPD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2PPDB</entryIDChain>
<sequence>IVIDDAGTEVH</sequence>
<secondary-structure>EEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 2947 CA ILE B 50 29.855 51.532 73.812 1.00 24.99 C </line>
<line>ATOM 2955 CA VAL B 51 31.233 48.011 74.298 1.00 24.19 C </line>
<line>ATOM 2962 CA ILE B 52 30.245 45.695 71.453 1.00 22.05 C </line>
<line>ATOM 2970 CA ASP B 53 31.592 42.291 72.498 1.00 22.92 C </line>
<line>ATOM 2978 CA ASP B 54 32.601 40.161 75.515 1.00 26.05 C </line>
<line>ATOM 2986 CA ALA B 55 36.278 41.019 74.934 1.00 27.28 C </line>
<line>ATOM 2991 CA GLY B 56 35.597 44.708 75.663 1.00 27.57 C </line>
<line>ATOM 2995 CA THR B 57 35.918 46.082 72.114 1.00 26.52 C </line>
<line>ATOM 3002 CA GLU B 58 34.858 49.745 72.035 1.00 28.87 C </line>
<line>ATOM 3011 CA VAL B 59 33.133 51.873 69.435 1.00 27.20 C </line>
<line>ATOM 3018 CA HIS B 60 32.501 55.610 69.630 1.00 26.57 C </line>
</atom-coordinate>
<distance-map>
<line> HIS VAL GLU THR GLY ALA ASP ASP ILE VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 6.41 5.48 5.60 8.33 9.11 12.37 11.82 9.49 6.31 3.81 </line>
<line>VAL CA 9.01 6.49 4.61 5.52 5.64 8.65 8.06 6.01 3.80 </line>
<line>ILE CA 10.33 7.11 6.17 5.72 6.88 8.39 7.26 3.81 </line>
<line>ASP CA 13.65 10.18 8.15 5.76 5.65 5.43 3.83 </line>
<line>ASP CA 16.53 13.21 10.44 7.59 5.45 3.82 </line>
<line>ALA CA 15.98 12.57 9.30 5.81 3.82 </line>
<line>GLY CA 12.84 9.81 6.25 3.82 </line>
<line>THR CA 10.42 6.96 3.81 </line>
<line>GLU CA 6.76 3.78 </line>
<line>VAL CA 3.80 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>ILE CA 340</line>
<line>VAL CA 294</line>
<line>ILE CA 371</line>
<line>ASP CA 306</line>
<line>ASP CA 201</line>
<line>ALA CA 185</line>
<line>GLY CA 207</line>
<line>THR CA 297</line>
<line>GLU CA 348</line>
<line>VAL CA 433</line>
<line>HIS CA 416</line>
</n14>
</entryChain>
<parallel>
<x>12.623000144958496</x>
<y>-5.176000118255615</y>
<z>-91.9520034790039</z>
</parallel>
<rotation>
<x>-0.2540000081062317</x>
<y>-0.38499999046325684</y>
<z>-0.8870000243186951</z>
<x>-0.8199999928474426</x>
<y>0.5730000138282776</y>
<z>-0.014000000432133675</z>
<x>0.5130000114440918</x>
<y>0.7229999899864197</y>
<z>-0.4620000123977661</z>
</rotation>
<rmsd>0.9885730147361755</rmsd>
<dmax>1.7064980268478394</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2PPD</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>2PPDB</entryIDChain>
<sequence>CAPPG-MVPWA</sequence>
<secondary-structure> - HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3595 CA CYS B 136 21.470 60.094 60.425 1.00 24.79 C </line>
<line>ATOM 3601 CA ALA B 137 22.870 61.390 57.143 1.00 26.31 C </line>
<line>ATOM 3606 CA PRO B 138 25.260 64.363 57.433 1.00 28.38 C </line>
<line>ATOM 3613 CA PRO B 139 26.523 65.298 53.916 1.00 30.23 C </line>
<line>ATOM 3620 CA GLY B 140 30.111 64.017 53.410 1.00 31.45 C </line>
<line>ATOM 3624 CA MET B 141 29.937 61.560 56.335 1.00 30.88 C </line>
<line>ATOM 3632 CA VAL B 142 26.737 59.553 55.680 1.00 26.30 C </line>
<line>ATOM 3639 CA PRO B 143 27.974 55.945 55.937 1.00 25.66 C </line>
<line>ATOM 3646 CA TRP B 144 30.244 56.750 58.906 1.00 25.79 C </line>
<line>ATOM 3660 CA ALA B 145 27.262 58.083 60.917 1.00 24.88 C </line>
</atom-coordinate>
<distance-map>
<line> ALA TRP PRO VAL MET GLY PRO PRO ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 6.15 9.51 8.93 7.11 9.52 11.80 9.75 6.45 3.80 </line>
<line>ALA CA 6.67 8.89 7.56 4.52 7.12 8.56 6.25 3.83 </line>
<line>PRO CA 7.46 9.22 8.97 5.33 5.56 6.31 3.85 </line>
<line>PRO CA 10.08 10.57 9.68 6.01 5.61 3.84 </line>
<line>GLY CA 9.98 9.11 8.72 6.04 3.82 </line>
<line>MET CA 6.34 5.46 5.96 3.83 </line>
<line>VAL CA 5.46 5.53 3.82 </line>
<line>PRO CA 5.47 3.82 </line>
<line>TRP CA 3.84 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>CYS CA 496</line>
<line>ALA CA 360</line>
<line>PRO CA 317</line>
<line>PRO CA 218</line>
<line>GLY CA 189</line>
<line>MET CA 286</line>
<line>VAL CA 334</line>
<line>PRO CA 374</line>
<line>TRP CA 421</line>
<line>ALA CA 466</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2A3T</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2A3TA</entryIDChain>
<sequence>CAPGGPMIPWH</sequence>
<secondary-structure> GGGHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 954 CA CYS A 167 27.206 42.205 -5.484 1.00 18.48 C </line>
<line>ATOM 960 CA ALA A 168 24.034 40.194 -6.204 1.00 21.64 C </line>
<line>ATOM 965 CA PRO A 169 21.645 42.135 -8.399 1.00 24.91 C </line>
<line>ATOM 972 CA GLY A 170 19.416 39.125 -9.217 1.00 27.93 C </line>
<line>ATOM 976 CA GLY A 171 19.153 36.017 -11.404 1.00 29.12 C </line>
<line>ATOM 980 CA PRO A 172 22.005 35.441 -13.903 1.00 28.51 C </line>
<line>ATOM 987 CA MET A 173 23.481 38.812 -12.861 1.00 27.36 C </line>
<line>ATOM 995 CA ILE A 174 24.508 37.262 -9.549 1.00 23.73 C </line>
<line>ATOM 1003 CA PRO A 175 27.375 34.919 -10.661 1.00 20.69 C </line>
<line>ATOM 1010 CA TRP A 176 28.371 37.311 -13.446 1.00 19.79 C </line>
<line>ATOM 1024 CA HIS A 177 28.890 40.385 -11.239 1.00 17.35 C </line>
</atom-coordinate>
<distance-map>
<line> HIS TRP PRO ILE MET PRO GLY GLY PRO ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 6.27 9.42 8.94 6.95 8.93 11.99 11.76 9.17 6.28 3.82 </line>
<line>ALA CA 7.00 8.92 7.67 4.47 6.82 9.27 8.27 5.62 3.78 </line>
<line>PRO CA 7.98 9.69 9.49 5.77 5.86 8.67 7.26 3.83 </line>
<line>GLY CA 9.77 10.07 9.12 5.43 5.47 6.50 3.81 </line>
<line>GLY CA 10.67 9.53 8.33 5.80 5.35 3.84 </line>
<line>PRO CA 8.89 6.65 6.29 5.34 3.82 </line>
<line>MET CA 5.86 5.15 5.93 3.80 </line>
<line>ILE CA 5.64 5.49 3.87 </line>
<line>PRO CA 5.70 3.80 </line>
<line>TRP CA 3.82 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>CYS CA 508</line>
<line>ALA CA 365</line>
<line>PRO CA 348</line>
<line>GLY CA 240</line>
<line>GLY CA 180</line>
<line>PRO CA 234</line>
<line>MET CA 318</line>
<line>ILE CA 350</line>
<line>PRO CA 379</line>
<line>TRP CA 431</line>
<line>HIS CA 486</line>
</n14>
</entryChain>
<parallel>
<x>3.007999897003174</x>
<y>22.694000244140625</y>
<z>65.50700378417969</z>
</parallel>
<rotation>
<x>-0.11800000071525574</x>
<y>-0.8370000123977661</y>
<z>0.5339999794960022</z>
<x>-0.23000000417232513</x>
<y>0.546999990940094</y>
<z>0.8050000071525574</z>
<x>-0.9660000205039978</x>
<y>-0.02800000086426735</y>
<z>-0.257999986410141</z>
</rotation>
<rmsd>0.6772429943084717</rmsd>
<dmax>1.2683559656143188</dmax>
</indel>