NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E1QB-2HLDT
confEVID 1E1QB-2HLDT
pdbIDA 1E1Q
pdbIDB 2HLD
pdbChainA B
pdbChainB T
identity 0.713100016117096
indelSize 2
alignment <alignment>
<seq1>DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQV---AGTMKLELAQYREVA--LDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA</seq1>
<seq2>NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVAT---</seq2>
<ss_1> EEEEEEEEEEEEEEEEEE EEEEE EEEEEEE EEEEEE GGG EEEE EEE GGG EE EEE HHHHHH EEEEEE HHHHHHHHHGGGHHHH EEEEEEE HHHHHHHHHHHH GGGEEEEEE HHHH HHHHHHHHHHHHHH EEEEEEE HHHHHHHHHHHHHH GGG HHHHHHHHGGG EEEEE HHHHH HHHH EEEE HHHHH EE GGG HHHHH ---HHHHHHHHHHHH -- HHHHHHHHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHH </ss_1>
<ss_2> EEEEEEEEEEEEEEEEEE EEEEE EEEEEEE EEEEEE EEEE EEEEE EE EEEEE EEE HHHHHH EE EEEEEE HHHHHHHHHGGGHHHH EEEEEEE HHHHHHHHHHHHH GGGEEEEEE HHHH HHHHHHHHHHHHHH EEEEEEE HHHHHHHHHHHHHH GGG HHHHHHHHGGG EEEE HHHHH EEEE HHHHH EE GGG HHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHHH GGGHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHH ---</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1E1Q</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1E1QB</entryIDChain>
<sequence>AMKQV---AGTMK</sequence>
<secondary-structure>HHHH ---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6433 CA ALA B 382 99.256 108.511 111.665 1.00 72.16 C </line>
<line>ATOM 6438 CA MET B 383 98.885 106.106 108.718 1.00 72.55 C </line>
<line>ATOM 6446 CA LYS B 384 98.666 102.977 110.878 1.00 77.42 C </line>
<line>ATOM 6455 CA GLN B 385 95.487 104.684 112.120 1.00 82.83 C </line>
<line>ATOM 6464 CA VAL B 386 93.640 105.403 108.895 1.00 84.95 C </line>
<line>ATOM 6471 CA ALA B 387 95.490 103.304 106.288 1.00 85.74 C </line>
<line>ATOM 6476 CA GLY B 388 95.278 100.296 108.612 1.00 87.16 C </line>
<line>ATOM 6480 CA THR B 389 91.494 100.172 108.200 1.00 87.33 C </line>
<line>ATOM 6487 CA MET B 390 91.688 101.145 104.505 1.00 86.11 C </line>
<line>ATOM 6495 CA LYS B 391 93.530 97.919 103.675 1.00 92.00 C </line>
</atom-coordinate>
<distance-map>
<line> LYS MET THR GLY ALA VAL GLN LYS MET ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 14.45 12.76 11.91 9.62 8.38 6.99 5.39 5.62 3.82 </line>
<line>MET CA 11.01 9.70 9.49 6.84 5.03 5.29 5.01 3.81 </line>
<line>LYS CA 10.19 9.63 8.15 4.88 5.59 5.92 3.82 </line>
<line>GLN CA 11.00 9.22 7.19 5.62 5.99 3.79 </line>
<line>VAL CA 9.13 6.42 5.70 5.37 3.82 </line>
<line>ALA CA 6.30 4.72 5.43 3.81 </line>
<line>GLY CA 5.75 5.52 3.81 </line>
<line>THR CA 5.45 3.83 </line>
<line>MET CA 3.81 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ALA CA 389</line>
<line>MET CA 448</line>
<line>LYS CA 340</line>
<line>GLN CA 337</line>
<line>VAL CA 411</line>
<line>ALA CA 432</line>
<line>GLY CA 333</line>
<line>THR CA 327</line>
<line>MET CA 406</line>
<line>LYS CA 367</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2HLD</pdbID>
<pdbChain>T</pdbChain>
<entryIDChain>2HLDT</entryIDChain>
<sequence>ALKQVAGSLKLFL</sequence>
<secondary-structure>HHHHH HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 55215 CA ALA T 384 -1.255 -37.971 107.187 1.00 74.50 C </line>
<line>ATOM 55220 CA LEU T 385 1.741 -37.161 109.396 1.00 74.58 C </line>
<line>ATOM 55228 CA LYS T 386 2.769 -40.823 109.464 1.00 71.86 C </line>
<line>ATOM 55237 CA GLN T 387 2.910 -40.921 105.669 1.00 75.55 C </line>
<line>ATOM 55246 CA VAL T 388 4.710 -37.671 104.873 1.00 77.10 C </line>
<line>ATOM 55253 CA ALA T 389 7.488 -38.463 107.344 1.00 77.17 C </line>
<line>ATOM 55258 CA GLY T 390 8.352 -42.041 106.421 1.00 77.06 C </line>
<line>ATOM 55262 CA SER T 391 11.753 -42.708 107.955 1.00 76.65 C </line>
<line>ATOM 55268 CA LEU T 392 12.250 -39.192 109.309 1.00 75.05 C </line>
<line>ATOM 55276 CA LYS T 393 12.945 -40.473 112.822 1.00 75.64 C </line>
<line>ATOM 55285 CA LEU T 394 15.482 -43.111 111.773 1.00 78.03 C </line>
<line>ATOM 55293 CA PHE T 395 17.035 -40.634 109.338 1.00 78.36 C </line>
<line>ATOM 55304 CA LEU T 396 17.577 -37.791 111.806 1.00 76.73 C </line>
</atom-coordinate>
<distance-map>
<line> LEU PHE LEU LYS LEU SER GLY ALA VAL GLN LYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 19.39 18.61 18.10 15.48 13.73 13.86 10.46 8.76 6.41 5.32 5.43 3.81 </line>
<line>LEU CA 16.03 15.68 15.16 12.18 10.70 11.54 8.74 6.24 5.43 5.42 3.80 </line>
<line>LYS CA 15.30 14.27 13.12 10.72 9.62 9.30 6.47 5.69 5.90 3.80 </line>
<line>GLN CA 16.20 14.60 14.15 12.33 10.17 9.31 5.61 5.46 3.80 </line>
<line>VAL CA 14.62 13.44 13.90 11.78 8.88 9.19 5.90 3.80 </line>
<line>ALA CA 11.05 9.99 10.25 7.99 5.20 6.05 3.79 </line>
<line>GLY CA 11.50 9.27 8.98 8.03 5.63 3.79 </line>
<line>SER CA 8.54 5.84 5.35 5.49 3.80 </line>
<line>LEU CA 6.05 5.00 5.65 3.80 </line>
<line>LYS CA 5.45 5.38 3.81 </line>
<line>LEU CA 5.72 3.80 </line>
<line>PHE CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ALA CA 375</line>
<line>LEU CA 430</line>
<line>LYS CA 352</line>
<line>GLN CA 312</line>
<line>VAL CA 390</line>
<line>ALA CA 374</line>
<line>GLY CA 272</line>
<line>SER CA 256</line>
<line>LEU CA 371</line>
<line>LYS CA 361</line>
<line>LEU CA 259</line>
<line>PHE CA 302</line>
<line>LEU CA 351</line>
</n14>
</entryChain>
<parallel>
<x>89.58000183105469</x>
<y>143.5970001220703</y>
<z>0.6100000143051147</z>
</parallel>
<rotation>
<x>-0.7099999785423279</x>
<y>-0.4650000035762787</y>
<z>-0.5289999842643738</z>
<x>0.26499998569488525</x>
<y>0.5199999809265137</y>
<z>-0.8119999766349792</z>
<x>0.6520000100135803</x>
<y>-0.7170000076293945</y>
<z>-0.2460000067949295</z>
</rotation>
<rmsd>3.3254590034484863</rmsd>
<dmax>4.682192802429199</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1E1Q</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1E1QB</entryIDChain>
<sequence>YREVA--LDAAT</sequence>
<secondary-structure>HH -- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6543 CA TYR B 397 85.312 94.983 98.958 1.00 90.99 C </line>
<line>ATOM 6555 CA ARG B 398 87.717 92.958 96.828 1.00 98.78 C </line>
<line>ATOM 6566 CA GLU B 399 86.007 89.766 98.044 1.00103.02 C </line>
<line>ATOM 6575 CA VAL B 400 82.576 90.992 96.939 1.00107.57 C </line>
<line>ATOM 6582 CA ALA B 401 83.115 92.899 93.682 1.00111.69 C </line>
<line>ATOM 6587 CA LEU B 410 71.524 93.502 96.501 1.00114.91 C </line>
<line>ATOM 6595 CA ASP B 411 71.668 93.006 100.264 1.00114.17 C </line>
<line>ATOM 6603 CA ALA B 412 72.267 96.034 102.474 1.00115.69 C </line>
<line>ATOM 6608 CA ALA B 413 75.247 94.440 104.190 1.00116.93 C </line>
<line>ATOM 6613 CA THR B 414 77.272 93.754 101.034 1.00115.84 C </line>
</atom-coordinate>
<distance-map>
<line> THR ALA ALA ASP LEU ALA VAL GLU ARG TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 8.39 11.36 13.55 13.85 14.08 6.08 5.24 5.34 3.80 </line>
<line>ARG CA 11.29 14.56 16.73 16.41 16.21 5.57 5.51 3.82 </line>
<line>GLU CA 10.06 13.24 15.74 14.87 15.04 6.10 3.81 </line>
<line>VAL CA 7.25 10.87 12.74 11.58 11.34 3.81 </line>
<line>ALA CA 9.43 13.22 14.31 13.20 11.94 </line>
<line>LEU CA 7.32 8.59 6.53 3.80 </line>
<line>ASP CA 5.71 5.50 3.80 </line>
<line>ALA CA 5.69 3.79 </line>
<line>ALA CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>TYR CA 272</line>
<line>ARG CA 236</line>
<line>GLU CA 180</line>
<line>VAL CA 175</line>
<line>ALA CA 192</line>
<line>LEU CA 89</line>
<line>ASP CA 91</line>
<line>ALA CA 111</line>
<line>ALA CA 138</line>
<line>THR CA 173</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2HLD</pdbID>
<pdbChain>T</pdbChain>
<entryIDChain>2HLDT</entryIDChain>
<sequence>VAAFAQDLDAST</sequence>
<secondary-structure>HHH HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 55358 CA VAL T 402 27.081 -38.719 109.823 1.00 93.46 C </line>
<line>ATOM 55365 CA ALA T 403 27.485 -35.110 111.039 1.00 94.74 C </line>
<line>ATOM 55370 CA ALA T 404 29.894 -36.114 113.843 1.00 97.28 C </line>
<line>ATOM 55375 CA PHE T 405 32.120 -38.085 111.416 1.00101.13 C </line>
<line>ATOM 55386 CA ALA T 406 32.129 -35.084 109.036 1.00100.93 C </line>
<line>ATOM 55391 CA GLN T 407 34.264 -32.834 111.249 1.00 98.85 C </line>
<line>ATOM 55400 CA ASP T 411 36.369 -36.650 103.022 1.00 95.60 C </line>
<line>ATOM 55408 CA LEU T 412 33.911 -34.695 100.869 1.00 93.37 C </line>
<line>ATOM 55416 CA ASP T 413 32.018 -37.849 99.890 1.00 89.64 C </line>
<line>ATOM 55424 CA ALA T 414 29.241 -37.368 97.292 1.00 88.58 C </line>
<line>ATOM 55429 CA SER T 415 26.536 -39.547 98.872 1.00 88.05 C </line>
<line>ATOM 55435 CA THR T 416 27.004 -38.299 102.470 1.00 84.93 C </line>
</atom-coordinate>
<distance-map>
<line> THR SER ALA ASP LEU ASP GLN ALA PHE ALA ALA VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.37 11.00 12.79 11.13 11.96 11.70 9.39 6.27 5.32 5.56 3.83 </line>
<line>ALA CA 9.16 12.99 14.04 12.34 12.04 12.07 7.15 5.06 5.52 3.83 </line>
<line>ALA CA 11.94 15.72 16.61 14.22 13.66 12.62 6.05 5.40 3.84 </line>
<line>PHE CA 10.31 13.81 14.43 11.53 11.22 9.52 5.67 3.83 </line>
<line>ALA CA 8.93 12.43 12.31 9.56 8.37 7.52 3.81 </line>
<line>GLN CA 12.64 16.06 15.51 12.62 10.55 9.31 </line>
<line>ASP CA 9.53 11.06 9.17 5.49 3.81 </line>
<line>LEU CA 7.95 9.05 6.46 3.81 </line>
<line>ASP CA 5.66 5.83 3.83 </line>
<line>ALA CA 5.72 3.82 </line>
<line>SER CA 3.84 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>VAL CA 228</line>
<line>ALA CA 255</line>
<line>ALA CA 179</line>
<line>PHE CA 153</line>
<line>ALA CA 174</line>
<line>GLN CA 127</line>
<line>ASP CA 111</line>
<line>LEU CA 122</line>
<line>ASP CA 120</line>
<line>ALA CA 112</line>
<line>SER CA 144</line>
<line>THR CA 206</line>
</n14>
</entryChain>
<parallel>
<x>49.53799819946289</x>
<y>129.64599609375</y>
<z>-8.6899995803833</z>
</parallel>
<rotation>
<x>-0.4410000145435333</x>
<y>-0.7540000081062317</y>
<z>-0.4869999885559082</z>
<x>-0.03999999910593033</x>
<y>0.5580000281333923</y>
<z>-0.8289999961853027</z>
<x>0.8960000276565552</x>
<y>-0.34700000286102295</y>
<z>-0.2759999930858612</z>
</rotation>
<rmsd>2.23728609085083</rmsd>
<dmax>2.993690013885498</dmax>
</indel>