NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E1RB-2HLDT
confEVID 1E1RB-2HLDT
pdbIDA 1E1R
pdbIDB 2HLD
pdbChainA B
pdbChainB T
identity 0.713100016117096
indelSize 2
alignment <alignment>
<seq1>DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQV---AGTMKLELAQYREVA--LDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA</seq1>
<seq2>NLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKEGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQDLDASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREKGELSKELLASLKSATESFVAT---</seq2>
<ss_1> EEEEEEE EEEEEEEE EEEEE EEEEEEEEE EEEEEE GGG EEEE EEE GGG EE EEE HHHHHH EEEEEE HHHHHHHHHGGGHHHH EEEEEEE HHHHHHHHHHHHH GGGEEEEEE HHHH HHHHHHHHHHHHH EEEEEEE HHHHHHHHHHHHHH GGG HHHHHHHHGGG EEEEE HHHHH EEEE HHHHH EEGGG GGGG HHHHHH---HHHHHHHHHHHHHH -- HHHHHHHHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHHH </ss_1>
<ss_2> EEEEEEEEEEEEEEEEEE EEEEE EEEEEEE EEEEEE EEEE EEEEE EE EEEEE EEE HHHHHH EE EEEEEE HHHHHHHHHGGGHHHH EEEEEEE HHHHHHHHHHHHH GGGEEEEEE HHHH HHHHHHHHHHHHHH EEEEEEE HHHHHHHHHHHHHH GGG HHHHHHHHGGG EEEE HHHHH EEEE HHHHH EE GGG HHHHHH HHHHHHHHHHHHH HHHHHHHHHHHHHHHH HHHHHHHHHHHH GGGHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHHHH ---</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1E1R</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1E1RB</entryIDChain>
<sequence>AMKQV---AGTMK</sequence>
<secondary-structure>HHHHH---HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6433 CA ALA B 382 98.025 107.921 110.124 1.00 59.69 C </line>
<line>ATOM 6438 CA MET B 383 97.834 105.598 107.136 1.00 59.78 C </line>
<line>ATOM 6446 CA LYS B 384 97.083 102.461 109.176 1.00 62.56 C </line>
<line>ATOM 6455 CA GLN B 385 94.044 104.228 110.604 1.00 62.68 C </line>
<line>ATOM 6464 CA VAL B 386 92.462 104.680 107.177 1.00 61.53 C </line>
<line>ATOM 6471 CA ALA B 387 94.369 102.466 104.749 1.00 64.39 C </line>
<line>ATOM 6476 CA GLY B 388 93.940 99.322 106.844 1.00 70.04 C </line>
<line>ATOM 6480 CA THR B 389 90.162 99.607 106.756 1.00 77.45 C </line>
<line>ATOM 6487 CA MET B 390 90.313 100.628 103.104 1.00 81.36 C </line>
<line>ATOM 6495 CA LYS B 391 92.095 97.457 102.028 1.00 84.27 C </line>
</atom-coordinate>
<distance-map>
<line> LYS MET THR GLY ALA VAL GLN LYS MET ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 14.50 12.73 11.93 10.07 8.49 7.08 5.45 5.62 3.79 </line>
<line>MET CA 11.19 9.88 9.74 7.39 5.25 5.45 5.32 3.82 </line>
<line>LYS CA 10.05 9.28 7.87 5.02 5.19 5.50 3.79 </line>
<line>GLN CA 11.10 9.12 7.16 6.18 6.12 3.80 </line>
<line>VAL CA 8.88 6.13 5.59 5.57 3.80 </line>
<line>ALA CA 6.14 4.75 5.47 3.80 </line>
<line>GLY CA 5.48 5.37 3.79 </line>
<line>THR CA 5.54 3.80 </line>
<line>MET CA 3.79 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>ALA CA 384</line>
<line>MET CA 448</line>
<line>LYS CA 346</line>
<line>GLN CA 341</line>
<line>VAL CA 412</line>
<line>ALA CA 422</line>
<line>GLY CA 329</line>
<line>THR CA 316</line>
<line>MET CA 408</line>
<line>LYS CA 377</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2HLD</pdbID>
<pdbChain>T</pdbChain>
<entryIDChain>2HLDT</entryIDChain>
<sequence>ALKQVAGSLKLFL</sequence>
<secondary-structure>HHHHH HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 55215 CA ALA T 384 -1.255 -37.971 107.187 1.00 74.50 C </line>
<line>ATOM 55220 CA LEU T 385 1.741 -37.161 109.396 1.00 74.58 C </line>
<line>ATOM 55228 CA LYS T 386 2.769 -40.823 109.464 1.00 71.86 C </line>
<line>ATOM 55237 CA GLN T 387 2.910 -40.921 105.669 1.00 75.55 C </line>
<line>ATOM 55246 CA VAL T 388 4.710 -37.671 104.873 1.00 77.10 C </line>
<line>ATOM 55253 CA ALA T 389 7.488 -38.463 107.344 1.00 77.17 C </line>
<line>ATOM 55258 CA GLY T 390 8.352 -42.041 106.421 1.00 77.06 C </line>
<line>ATOM 55262 CA SER T 391 11.753 -42.708 107.955 1.00 76.65 C </line>
<line>ATOM 55268 CA LEU T 392 12.250 -39.192 109.309 1.00 75.05 C </line>
<line>ATOM 55276 CA LYS T 393 12.945 -40.473 112.822 1.00 75.64 C </line>
<line>ATOM 55285 CA LEU T 394 15.482 -43.111 111.773 1.00 78.03 C </line>
<line>ATOM 55293 CA PHE T 395 17.035 -40.634 109.338 1.00 78.36 C </line>
<line>ATOM 55304 CA LEU T 396 17.577 -37.791 111.806 1.00 76.73 C </line>
</atom-coordinate>
<distance-map>
<line> LEU PHE LEU LYS LEU SER GLY ALA VAL GLN LYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 19.39 18.61 18.10 15.48 13.73 13.86 10.46 8.76 6.41 5.32 5.43 3.81 </line>
<line>LEU CA 16.03 15.68 15.16 12.18 10.70 11.54 8.74 6.24 5.43 5.42 3.80 </line>
<line>LYS CA 15.30 14.27 13.12 10.72 9.62 9.30 6.47 5.69 5.90 3.80 </line>
<line>GLN CA 16.20 14.60 14.15 12.33 10.17 9.31 5.61 5.46 3.80 </line>
<line>VAL CA 14.62 13.44 13.90 11.78 8.88 9.19 5.90 3.80 </line>
<line>ALA CA 11.05 9.99 10.25 7.99 5.20 6.05 3.79 </line>
<line>GLY CA 11.50 9.27 8.98 8.03 5.63 3.79 </line>
<line>SER CA 8.54 5.84 5.35 5.49 3.80 </line>
<line>LEU CA 6.05 5.00 5.65 3.80 </line>
<line>LYS CA 5.45 5.38 3.81 </line>
<line>LEU CA 5.72 3.80 </line>
<line>PHE CA 3.80 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>ALA CA 375</line>
<line>LEU CA 430</line>
<line>LYS CA 352</line>
<line>GLN CA 312</line>
<line>VAL CA 390</line>
<line>ALA CA 374</line>
<line>GLY CA 272</line>
<line>SER CA 256</line>
<line>LEU CA 371</line>
<line>LYS CA 361</line>
<line>LEU CA 259</line>
<line>PHE CA 302</line>
<line>LEU CA 351</line>
</n14>
</entryChain>
<parallel>
<x>88.2959976196289</x>
<y>142.9510040283203</y>
<z>-0.9909999966621399</z>
</parallel>
<rotation>
<x>-0.6949999928474426</x>
<y>-0.47999998927116394</y>
<z>-0.5350000262260437</z>
<x>0.3009999990463257</x>
<y>0.4819999933242798</y>
<z>-0.8230000138282776</z>
<x>0.652999997138977</x>
<y>-0.7329999804496765</y>
<z>-0.1899999976158142</z>
</rotation>
<rmsd>3.2638909816741943</rmsd>
<dmax>4.803499221801758</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1E1R</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1E1RB</entryIDChain>
<sequence>YREVA--LDAAT</sequence>
<secondary-structure>HHHH -- HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 6543 CA TYR B 397 84.268 94.402 97.102 1.00 93.56 C </line>
<line>ATOM 6555 CA ARG B 398 86.654 92.088 95.272 1.00 98.20 C </line>
<line>ATOM 6566 CA GLU B 399 84.792 88.987 96.469 1.00102.23 C </line>
<line>ATOM 6575 CA VAL B 400 81.619 90.354 94.853 1.00104.67 C </line>
<line>ATOM 6582 CA ALA B 401 82.189 92.397 91.675 1.00106.06 C </line>
<line>ATOM 6587 CA LEU B 410 70.830 93.002 94.711 1.00110.89 C </line>
<line>ATOM 6595 CA ASP B 411 71.070 92.227 98.436 1.00108.61 C </line>
<line>ATOM 6603 CA ALA B 412 71.739 95.223 100.693 1.00107.88 C </line>
<line>ATOM 6608 CA ALA B 413 74.737 93.396 102.115 1.00106.15 C </line>
<line>ATOM 6613 CA THR B 414 76.668 92.924 98.877 1.00103.18 C </line>
</atom-coordinate>
<distance-map>
<line> THR ALA ALA ASP LEU ALA VAL GLU ARG TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 7.94 10.82 13.06 13.44 13.72 6.15 5.33 5.48 3.79 </line>
<line>ARG CA 10.65 13.80 16.18 15.90 15.86 5.74 5.34 3.81 </line>
<line>GLU CA 9.34 12.35 15.07 14.24 14.63 6.43 3.81 </line>
<line>VAL CA 6.88 10.46 12.47 11.30 11.11 3.82 </line>
<line>ALA CA 9.09 12.87 14.09 13.01 11.77 </line>
<line>LEU CA 7.17 8.38 6.45 3.81 </line>
<line>ASP CA 5.66 5.32 3.81 </line>
<line>ALA CA 5.73 3.79 </line>
<line>ALA CA 3.80 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>TYR CA 277</line>
<line>ARG CA 240</line>
<line>GLU CA 180</line>
<line>VAL CA 175</line>
<line>ALA CA 197</line>
<line>LEU CA 94</line>
<line>ASP CA 97</line>
<line>ALA CA 117</line>
<line>ALA CA 146</line>
<line>THR CA 175</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2HLD</pdbID>
<pdbChain>T</pdbChain>
<entryIDChain>2HLDT</entryIDChain>
<sequence>VAAFAQDLDAST</sequence>
<secondary-structure>HHH HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 55358 CA VAL T 402 27.081 -38.719 109.823 1.00 93.46 C </line>
<line>ATOM 55365 CA ALA T 403 27.485 -35.110 111.039 1.00 94.74 C </line>
<line>ATOM 55370 CA ALA T 404 29.894 -36.114 113.843 1.00 97.28 C </line>
<line>ATOM 55375 CA PHE T 405 32.120 -38.085 111.416 1.00101.13 C </line>
<line>ATOM 55386 CA ALA T 406 32.129 -35.084 109.036 1.00100.93 C </line>
<line>ATOM 55391 CA GLN T 407 34.264 -32.834 111.249 1.00 98.85 C </line>
<line>ATOM 55400 CA ASP T 411 36.369 -36.650 103.022 1.00 95.60 C </line>
<line>ATOM 55408 CA LEU T 412 33.911 -34.695 100.869 1.00 93.37 C </line>
<line>ATOM 55416 CA ASP T 413 32.018 -37.849 99.890 1.00 89.64 C </line>
<line>ATOM 55424 CA ALA T 414 29.241 -37.368 97.292 1.00 88.58 C </line>
<line>ATOM 55429 CA SER T 415 26.536 -39.547 98.872 1.00 88.05 C </line>
<line>ATOM 55435 CA THR T 416 27.004 -38.299 102.470 1.00 84.93 C </line>
</atom-coordinate>
<distance-map>
<line> THR SER ALA ASP LEU ASP GLN ALA PHE ALA ALA VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 7.37 11.00 12.79 11.13 11.96 11.70 9.39 6.27 5.32 5.56 3.83 </line>
<line>ALA CA 9.16 12.99 14.04 12.34 12.04 12.07 7.15 5.06 5.52 3.83 </line>
<line>ALA CA 11.94 15.72 16.61 14.22 13.66 12.62 6.05 5.40 3.84 </line>
<line>PHE CA 10.31 13.81 14.43 11.53 11.22 9.52 5.67 3.83 </line>
<line>ALA CA 8.93 12.43 12.31 9.56 8.37 7.52 3.81 </line>
<line>GLN CA 12.64 16.06 15.51 12.62 10.55 9.31 </line>
<line>ASP CA 9.53 11.06 9.17 5.49 3.81 </line>
<line>LEU CA 7.95 9.05 6.46 3.81 </line>
<line>ASP CA 5.66 5.83 3.83 </line>
<line>ALA CA 5.72 3.82 </line>
<line>SER CA 3.84 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>VAL CA 228</line>
<line>ALA CA 255</line>
<line>ALA CA 179</line>
<line>PHE CA 153</line>
<line>ALA CA 174</line>
<line>GLN CA 127</line>
<line>ASP CA 111</line>
<line>LEU CA 122</line>
<line>ASP CA 120</line>
<line>ALA CA 112</line>
<line>SER CA 144</line>
<line>THR CA 206</line>
</n14>
</entryChain>
<parallel>
<x>48.65999984741211</x>
<y>128.96299743652344</y>
<z>-10.5</z>
</parallel>
<rotation>
<x>-0.45100000500679016</x>
<y>-0.7210000157356262</y>
<z>-0.5260000228881836</z>
<x>-0.026000000536441803</x>
<y>0.6000000238418579</y>
<z>-0.800000011920929</z>
<x>0.8920000195503235</x>
<y>-0.34700000286102295</y>
<z>-0.289000004529953</z>
</rotation>
<rmsd>2.3004350662231445</rmsd>
<dmax>3.1307380199432373</dmax>
</indel>