NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E3DA-1YRQB
confEVID 1E3DA-1YRQB
pdbIDA 1E3D
pdbIDB 1YRQ
pdbChainA A
pdbChainB B
identity 0.622099995613098
indelSize 1
alignment <alignment>
<seq1>--SRPSVVYLHAAECTGCSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDGFICLVEGAIPTGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKAINVPGCPPNPLNMVGTLVAFLKGQKIELDEVGRPVMFFGQSVHDLCERRKHFDAGEFAPSFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNETNWPVAAGHPCIGCSEPNFWDDMTPFYQN-</seq1>
<seq2>AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEAL---GVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG</seq2>
<ss_1>-- EEEE HHHHHGGG HHHIIIII HHHHHHHHHHHH EEEEEEEEEE EEE EEEHHHHHHHGGG EEEEE EEE HHHHH EEE HHHHHHHHHH HHHH HHHHH HHHH GGG HHHH HHHH -</ss_1>
<ss_2> EEEE HHHHHGGG HHHHHH HHHHHHHHHHHH EEEEEEEEEE EEE EEEHHHHHHHH EEEEE HHHHH EEE HHHHH--- EEE HHHHHHHHHHHH GGG HHHH HHHH GGG HHHH HHHH HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1YRQ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1YRQB</entryIDChain>
<sequence>VSEAL---GVKTI</sequence>
<secondary-structure>HHHHH--- E</secondary-structure>
<atom-coordinate>
<line>ATOM 7090 CA VAL B 133 76.548 -33.246 46.218 1.00 8.52 C </line>
<line>ATOM 7097 CA SER B 134 79.796 -35.078 45.486 1.00 10.57 C </line>
<line>ATOM 7103 CA GLU B 135 81.446 -31.926 44.107 1.00 10.58 C </line>
<line>ATOM 7112 CA ALA B 136 80.565 -29.724 47.114 1.00 10.47 C </line>
<line>ATOM 7117 CA LEU B 137 81.224 -32.303 49.847 1.00 12.73 C </line>
<line>ATOM 7125 CA GLY B 138 83.713 -34.750 48.387 1.00 13.02 C </line>
<line>ATOM 7129 CA VAL B 139 81.602 -37.775 49.278 1.00 15.97 C </line>
<line>ATOM 7136 CA LYS B 140 81.040 -40.717 46.933 1.00 15.92 C </line>
<line>ATOM 7145 CA THR B 141 77.458 -40.960 45.756 1.00 14.30 C </line>
<line>ATOM 7152 CA ILE B 142 75.261 -43.479 43.962 1.00 11.17 C </line>
</atom-coordinate>
<distance-map>
<line> ILE THR LYS VAL GLY LEU ALA GLU SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 10.56 7.78 8.75 7.44 7.64 5.99 5.42 5.49 3.80 </line>
<line>SER CA 9.67 6.34 5.95 4.99 4.89 5.36 5.65 3.82 </line>
<line>GLU CA 13.11 10.01 9.24 7.81 5.61 5.76 3.83 </line>
<line>ALA CA 15.08 11.74 11.00 8.40 6.07 3.82 </line>
<line>LEU CA 13.97 10.29 8.91 5.51 3.78 </line>
<line>GLY CA 12.93 9.20 6.70 3.79 </line>
<line>VAL CA 10.05 6.30 3.80 </line>
<line>LYS CA 7.06 3.78 </line>
<line>THR CA 3.79 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>VAL CA 430</line>
<line>SER CA 359</line>
<line>GLU CA 289</line>
<line>ALA CA 306</line>
<line>LEU CA 276</line>
<line>GLY CA 209</line>
<line>VAL CA 266</line>
<line>LYS CA 291</line>
<line>THR CA 413</line>
<line>ILE CA 451</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1E3D</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1E3DA</entryIDChain>
<sequence>INDCYADLGVKAI</sequence>
<secondary-structure>HHHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 1855 CA ILE A 133 26.068 7.124 46.165 1.00 18.01 C </line>
<line>ATOM 1874 CA ASN A 134 28.789 9.507 47.341 1.00 21.65 C </line>
<line>ATOM 1888 CA ASP A 135 28.101 8.594 50.986 1.00 24.70 C </line>
<line>ATOM 1900 CA CYS A 136 28.189 4.912 50.238 1.00 27.81 C </line>
<line>ATOM 1910 CA TYR A 137 31.244 4.749 47.937 1.00 26.21 C </line>
<line>ATOM 1931 CA ALA A 138 33.398 7.576 49.307 1.00 31.79 C </line>
<line>ATOM 1941 CA ASP A 139 35.878 4.965 50.514 1.00 41.64 C </line>
<line>ATOM 1953 CA LEU A 140 36.163 3.656 46.946 1.00 36.97 C </line>
<line>ATOM 1972 CA GLY A 141 37.182 7.030 45.578 1.00 38.44 C </line>
<line>ATOM 1979 CA VAL A 142 33.896 7.340 43.744 1.00 33.90 C </line>
<line>ATOM 1995 CA LYS A 143 33.041 11.011 43.318 1.00 35.25 C </line>
<line>ATOM 2017 CA ALA A 144 29.783 11.518 41.466 1.00 24.38 C </line>
<line>ATOM 2027 CA ILE A 145 28.324 14.788 40.264 1.00 18.82 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA LYS VAL GLY LEU ASP ALA TYR CYS ASP ASN ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.93 7.43 8.48 8.20 11.13 10.70 10.95 7.99 5.96 5.10 5.43 3.80 </line>
<line>ASN CA 8.84 6.29 6.04 6.61 8.93 9.42 9.00 5.37 5.39 5.47 3.82 </line>
<line>ASP CA 12.38 10.10 9.44 9.36 10.68 10.28 8.60 5.65 5.83 3.76 </line>
<line>CYS CA 14.04 11.10 10.42 8.98 10.35 8.72 7.69 5.92 3.83 </line>
<line>TYR CA 12.97 9.48 7.99 5.60 6.78 5.14 5.31 3.81 </line>
<line>ALA CA 12.63 9.49 6.91 5.59 5.34 5.35 3.80 </line>
<line>ASP CA 16.08 12.73 9.82 7.44 5.51 3.81 </line>
<line>LEU CA 15.17 11.51 8.78 5.38 3.78 </line>
<line>GLY CA 12.92 9.58 6.17 3.78 </line>
<line>VAL CA 9.93 6.29 3.79 </line>
<line>LYS CA 6.77 3.78 </line>
<line>ALA CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ILE CA 918</line>
<line>ASN CA 741</line>
<line>ASP CA 618</line>
<line>CYS CA 667</line>
<line>TYR CA 609</line>
<line>ALA CA 446</line>
<line>ASP CA 328</line>
<line>LEU CA 410</line>
<line>GLY CA 363</line>
<line>VAL CA 585</line>
<line>LYS CA 626</line>
<line>ALA CA 845</line>
<line>ILE CA 900</line>
</n14>
</entryChain>
<parallel>
<x>49.928001403808594</x>
<y>-41.972999572753906</y>
<z>0.257999986410141</z>
</parallel>
<rotation>
<x>0.8650000095367432</x>
<y>-0.35199999809265137</y>
<z>0.35600000619888306</z>
<x>0.0949999988079071</x>
<y>-0.5820000171661377</y>
<z>-0.8080000281333923</z>
<x>0.492000013589859</x>
<y>0.7329999804496765</y>
<z>-0.4699999988079071</z>
</rotation>
<rmsd>1.5920790433883667</rmsd>
<dmax>3.818887948989868</dmax>
</indel>