NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E3DA-1YRQD
confEVID 1E3DA-1YRQD
pdbIDA 1E3D
pdbIDB 1YRQ
pdbChainA A
pdbChainB D
identity 0.622099995613098
indelSize 1
alignment <alignment>
<seq1>--SRPSVVYLHAAECTGCSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDGFICLVEGAIPTGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKAINVPGCPPNPLNMVGTLVAFLKGQKIELDEVGRPVMFFGQSVHDLCERRKHFDAGEFAPSFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNETNWPVAAGHPCIGCSEPNFWDDMTPFYQN-</seq1>
<seq2>AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEAL---GVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG</seq2>
<ss_1>-- EEEE HHHHHGGG HHHIIIII HHHHHHHHHHHH EEEEEEEEEE EEE EEEHHHHHHHGGG EEEEE EEE HHHHH EEE HHHHHHHHHH HHHH HHHHH HHHH GGG HHHH HHHH -</ss_1>
<ss_2> EEEE HHHHHGGG HHHHHH EE HHHHHHHHHHHH EEEEEEEE EEE EEEHHHHHHHHH EEEE HHHH GGG EEE HHHHH--- EEE HHHHHHHHHH GGG HHHH HHHH GGG HHHH HHHH HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1YRQ</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1YRQD</entryIDChain>
<sequence>VSEAL---GVKTI</sequence>
<secondary-structure>HHHHH--- E</secondary-structure>
<atom-coordinate>
<line>ATOM 19345 CA VAL D 133 91.881 29.006 87.084 1.00 8.29 C </line>
<line>ATOM 19352 CA SER D 134 91.399 32.356 88.816 1.00 8.51 C </line>
<line>ATOM 19358 CA GLU D 135 94.043 31.504 91.405 1.00 11.21 C </line>
<line>ATOM 19367 CA ALA D 136 96.569 30.180 88.806 1.00 10.64 C </line>
<line>ATOM 19372 CA LEU D 137 96.092 33.004 86.285 1.00 13.56 C </line>
<line>ATOM 19380 CA GLY D 138 95.110 35.915 88.514 1.00 8.75 C </line>
<line>ATOM 19384 CA VAL D 139 92.032 36.991 86.641 1.00 9.74 C </line>
<line>ATOM 19391 CA LYS D 140 88.382 36.972 87.459 1.00 11.36 C </line>
<line>ATOM 19400 CA THR D 141 86.382 34.173 85.821 1.00 10.17 C </line>
<line>ATOM 19407 CA ILE D 142 82.693 33.430 85.325 1.00 6.98 C </line>
</atom-coordinate>
<distance-map>
<line> ILE THR LYS VAL GLY LEU ALA GLU SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 10.35 7.65 8.71 8.00 7.76 5.86 5.13 5.44 3.80 </line>
<line>SER CA 9.44 6.12 5.68 5.16 5.15 5.37 5.61 3.80 </line>
<line>GLU CA 13.02 9.85 8.80 7.54 5.38 5.72 3.86 </line>
<line>ALA CA 14.67 11.34 10.72 8.47 5.92 3.82 </line>
<line>LEU CA 13.44 9.79 8.75 5.70 3.80 </line>
<line>GLY CA 13.06 9.30 6.89 3.76 </line>
<line>VAL CA 10.08 6.37 3.74 </line>
<line>LYS CA 7.03 3.81 </line>
<line>THR CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>VAL CA 430</line>
<line>SER CA 356</line>
<line>GLU CA 284</line>
<line>ALA CA 321</line>
<line>LEU CA 293</line>
<line>GLY CA 207</line>
<line>VAL CA 243</line>
<line>LYS CA 285</line>
<line>THR CA 402</line>
<line>ILE CA 449</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1E3D</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1E3DA</entryIDChain>
<sequence>INDCYADLGVKAI</sequence>
<secondary-structure>HHHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 1855 CA ILE A 133 26.068 7.124 46.165 1.00 18.01 C </line>
<line>ATOM 1874 CA ASN A 134 28.789 9.507 47.341 1.00 21.65 C </line>
<line>ATOM 1888 CA ASP A 135 28.101 8.594 50.986 1.00 24.70 C </line>
<line>ATOM 1900 CA CYS A 136 28.189 4.912 50.238 1.00 27.81 C </line>
<line>ATOM 1910 CA TYR A 137 31.244 4.749 47.937 1.00 26.21 C </line>
<line>ATOM 1931 CA ALA A 138 33.398 7.576 49.307 1.00 31.79 C </line>
<line>ATOM 1941 CA ASP A 139 35.878 4.965 50.514 1.00 41.64 C </line>
<line>ATOM 1953 CA LEU A 140 36.163 3.656 46.946 1.00 36.97 C </line>
<line>ATOM 1972 CA GLY A 141 37.182 7.030 45.578 1.00 38.44 C </line>
<line>ATOM 1979 CA VAL A 142 33.896 7.340 43.744 1.00 33.90 C </line>
<line>ATOM 1995 CA LYS A 143 33.041 11.011 43.318 1.00 35.25 C </line>
<line>ATOM 2017 CA ALA A 144 29.783 11.518 41.466 1.00 24.38 C </line>
<line>ATOM 2027 CA ILE A 145 28.324 14.788 40.264 1.00 18.82 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA LYS VAL GLY LEU ASP ALA TYR CYS ASP ASN ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.93 7.43 8.48 8.20 11.13 10.70 10.95 7.99 5.96 5.10 5.43 3.80 </line>
<line>ASN CA 8.84 6.29 6.04 6.61 8.93 9.42 9.00 5.37 5.39 5.47 3.82 </line>
<line>ASP CA 12.38 10.10 9.44 9.36 10.68 10.28 8.60 5.65 5.83 3.76 </line>
<line>CYS CA 14.04 11.10 10.42 8.98 10.35 8.72 7.69 5.92 3.83 </line>
<line>TYR CA 12.97 9.48 7.99 5.60 6.78 5.14 5.31 3.81 </line>
<line>ALA CA 12.63 9.49 6.91 5.59 5.34 5.35 3.80 </line>
<line>ASP CA 16.08 12.73 9.82 7.44 5.51 3.81 </line>
<line>LEU CA 15.17 11.51 8.78 5.38 3.78 </line>
<line>GLY CA 12.92 9.58 6.17 3.78 </line>
<line>VAL CA 9.93 6.29 3.79 </line>
<line>LYS CA 6.77 3.78 </line>
<line>ALA CA 3.78 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ILE CA 918</line>
<line>ASN CA 741</line>
<line>ASP CA 618</line>
<line>CYS CA 667</line>
<line>TYR CA 609</line>
<line>ALA CA 446</line>
<line>ASP CA 328</line>
<line>LEU CA 410</line>
<line>GLY CA 363</line>
<line>VAL CA 585</line>
<line>LYS CA 626</line>
<line>ALA CA 845</line>
<line>ILE CA 900</line>
</n14>
</entryChain>
<parallel>
<x>62.375</x>
<y>25.70800018310547</y>
<z>41.2130012512207</z>
</parallel>
<rotation>
<x>0.296999990940094</x>
<y>0.949999988079071</y>
<z>0.09399999678134918</z>
<x>-0.7519999742507935</x>
<y>0.1720000058412552</y>
<z>0.6359999775886536</z>
<x>0.5879999995231628</x>
<y>-0.2590000033378601</y>
<z>0.765999972820282</z>
</rotation>
<rmsd>1.651705026626587</rmsd>
<dmax>3.8346359729766846</dmax>
</indel>