NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E3DC-1YRQB
confEVID 1E3DC-1YRQB
pdbIDA 1E3D
pdbIDB 1YRQ
pdbChainA C
pdbChainB B
identity 0.622099995613098
indelSize 1
alignment <alignment>
<seq1>--SRPSVVYLHAAECTGCSEALLRTYQPFIDTLILDTISLDYHETIMAAAGEAAEEALQAAVNGPDGFICLVEGAIPTGMDNKYGYIAGHTMYDICKNILPKAKAVVSIGTCACYGGIQAAKPNPTAAKGINDCYADLGVKAINVPGCPPNPLNMVGTLVAFLKGQKIELDEVGRPVMFFGQSVHDLCERRKHFDAGEFAPSFNSEEARKGWCLYDVGCKGPETYNNCPKVLFNETNWPVAAGHPCIGCSEPNFWDDMTPFYQN-</seq1>
<seq2>AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEAL---GVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG</seq2>
<ss_1>-- EEEE HHHHHGGG HHHIIIII HHHHHHHHHHHH EEEEEEEEEE EEE EEEHHHHHHHGGG EEEEE HHHHH GGG EEE HHHHH EEE HHHHHHHHHH HHHH HHHHH HHHH GGG HHHH HHHH -</ss_1>
<ss_2> EEEE HHHHHGGG HHHHHH HHHHHHHHHHHH EEEEEEEEEE EEE EEEHHHHHHHH EEEEE HHHHH EEE HHHHH--- EEE HHHHHHHHHHHH GGG HHHH HHHH GGG HHHH HHHH HHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1YRQ</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1YRQB</entryIDChain>
<sequence>VSEAL---GVKTI</sequence>
<secondary-structure>HHHHH--- E</secondary-structure>
<atom-coordinate>
<line>ATOM 7090 CA VAL B 133 76.548 -33.246 46.218 1.00 8.52 C </line>
<line>ATOM 7097 CA SER B 134 79.796 -35.078 45.486 1.00 10.57 C </line>
<line>ATOM 7103 CA GLU B 135 81.446 -31.926 44.107 1.00 10.58 C </line>
<line>ATOM 7112 CA ALA B 136 80.565 -29.724 47.114 1.00 10.47 C </line>
<line>ATOM 7117 CA LEU B 137 81.224 -32.303 49.847 1.00 12.73 C </line>
<line>ATOM 7125 CA GLY B 138 83.713 -34.750 48.387 1.00 13.02 C </line>
<line>ATOM 7129 CA VAL B 139 81.602 -37.775 49.278 1.00 15.97 C </line>
<line>ATOM 7136 CA LYS B 140 81.040 -40.717 46.933 1.00 15.92 C </line>
<line>ATOM 7145 CA THR B 141 77.458 -40.960 45.756 1.00 14.30 C </line>
<line>ATOM 7152 CA ILE B 142 75.261 -43.479 43.962 1.00 11.17 C </line>
</atom-coordinate>
<distance-map>
<line> ILE THR LYS VAL GLY LEU ALA GLU SER VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 10.56 7.78 8.75 7.44 7.64 5.99 5.42 5.49 3.80 </line>
<line>SER CA 9.67 6.34 5.95 4.99 4.89 5.36 5.65 3.82 </line>
<line>GLU CA 13.11 10.01 9.24 7.81 5.61 5.76 3.83 </line>
<line>ALA CA 15.08 11.74 11.00 8.40 6.07 3.82 </line>
<line>LEU CA 13.97 10.29 8.91 5.51 3.78 </line>
<line>GLY CA 12.93 9.20 6.70 3.79 </line>
<line>VAL CA 10.05 6.30 3.80 </line>
<line>LYS CA 7.06 3.78 </line>
<line>THR CA 3.79 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>VAL CA 430</line>
<line>SER CA 359</line>
<line>GLU CA 289</line>
<line>ALA CA 306</line>
<line>LEU CA 276</line>
<line>GLY CA 209</line>
<line>VAL CA 266</line>
<line>LYS CA 291</line>
<line>THR CA 413</line>
<line>ILE CA 451</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1E3D</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1E3DC</entryIDChain>
<sequence>INDCYADLGVKAI</sequence>
<secondary-structure>HHHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 14067 CA ILE C 133 50.812 38.905 3.387 1.00 20.99 C </line>
<line>ATOM 14086 CA ASN C 134 53.937 37.601 5.098 1.00 29.62 C </line>
<line>ATOM 14100 CA ASP C 135 52.852 34.001 4.439 1.00 31.20 C </line>
<line>ATOM 14112 CA CYS C 136 51.859 34.681 0.875 1.00 27.51 C </line>
<line>ATOM 14122 CA TYR C 137 54.943 36.637 -0.255 1.00 29.96 C </line>
<line>ATOM 14143 CA ALA C 138 57.746 35.295 1.942 1.00 32.07 C </line>
<line>ATOM 14153 CA ASP C 139 59.194 33.537 -1.095 1.00 36.96 C </line>
<line>ATOM 14165 CA LEU C 140 59.251 36.925 -2.845 1.00 41.47 C </line>
<line>ATOM 14184 CA GLY C 141 61.221 38.278 0.082 1.00 39.11 C </line>
<line>ATOM 14191 CA VAL C 142 58.458 40.532 1.405 1.00 31.38 C </line>
<line>ATOM 14207 CA LYS C 143 58.735 41.161 5.160 1.00 31.89 C </line>
<line>ATOM 14229 CA ALA C 144 55.857 43.206 6.585 1.00 21.53 C </line>
<line>ATOM 14239 CA ILE C 145 55.380 44.666 10.060 1.00 23.76 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ALA LYS VAL GLY LEU ASP ALA TYR CYS ASP ASN ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 9.93 7.36 8.43 8.06 10.94 10.68 10.92 7.95 5.96 5.02 5.41 3.79 </line>
<line>ASN CA 8.75 6.11 5.97 6.53 8.87 9.58 9.08 5.46 5.53 5.54 3.82 </line>
<line>ASP CA 12.32 9.92 9.29 9.13 10.36 10.13 8.43 5.64 5.78 3.76 </line>
<line>CYS CA 14.02 11.01 10.37 8.84 10.06 8.57 7.68 6.01 3.82 </line>
<line>TYR CA 13.08 9.53 8.01 5.50 6.50 5.03 5.33 3.81 </line>
<line>ALA CA 12.62 9.37 6.76 5.31 4.94 5.28 3.80 </line>
<line>ASP CA 16.21 12.79 9.87 7.46 5.29 3.81 </line>
<line>LEU CA 15.54 11.83 9.07 5.63 3.78 </line>
<line>GLY CA 13.21 9.76 6.35 3.80 </line>
<line>VAL CA 10.07 6.38 3.82 </line>
<line>LYS CA 6.90 3.81 </line>
<line>ALA CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ILE CA 916</line>
<line>ASN CA 745</line>
<line>ASP CA 620</line>
<line>CYS CA 668</line>
<line>TYR CA 603</line>
<line>ALA CA 450</line>
<line>ASP CA 326</line>
<line>LEU CA 411</line>
<line>GLY CA 370</line>
<line>VAL CA 580</line>
<line>LYS CA 627</line>
<line>ALA CA 845</line>
<line>ILE CA 893</line>
</n14>
</entryChain>
<parallel>
<x>25.389999389648438</x>
<y>-72.16400146484375</y>
<z>44.64699935913086</z>
</parallel>
<rotation>
<x>0.8109999895095825</x>
<y>-0.5649999976158142</y>
<z>0.15299999713897705</z>
<x>-0.5699999928474426</x>
<y>-0.703000009059906</y>
<z>0.4259999990463257</z>
<x>-0.13300000131130219</x>
<y>-0.4320000112056732</y>
<z>-0.8920000195503235</z>
</rotation>
<rmsd>1.5068180561065674</rmsd>
<dmax>3.6176021099090576</dmax>
</indel>