NBDC - アーカイブトップ - ヘルプ
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タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E43A-2DIEA
confEVID 1E43A-2DIEA
pdbIDA 1E43
pdbIDB 2DIE
pdbChainA A
pdbChainB A
identity 0.677699983119965
indelSize 2
alignment <alignment>
<seq1>VNGTLMQYFEWYTPNDGQHWKRLQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFKWHWYHFDGADWDESRKIS-RIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAETKKWGIWYANELSLDGFRIDAAKHIKFSFLRDWVQAVRQATGKEMFTVAEYWQNNAGKLENYLNKTSFNQSVFDVPLHFNLQAASSQGGGYDMRKLLNGTVVSKHPLKSVTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQYAYGAQHDYFDHHDIVGWTREGDSSVANSGLAALITDGPGGAKRMYVGRQNAGETWHDITGNRSEPVVINSEGWGEFHVNGGSVSIYVQR</seq1>
<seq2>TNGTMMQYFEWHLPNDGNHWNRLRDDAANLKSKGITAVWIPPAWKGTSQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQGAVTSLKNNGIQVYGDVVMNHKGGADGTEMVNAVEVNRSNRNQEISGEYTIEAWTKFDFPGRGNTHSNFKWRWYHFDGTDWDQSRQLQNKIYKFRGTGKAWDWEVDIENGNYDYLMYADIDMDHPEVINELRNWGVWYTNTLNLDGFRIDAVKHIKYSYTRDWLTHVRNTTGKPMFAVAEFWKNDLAAIENYLNKTSWNHSVFDVPLHYNLYNASNSGGYFDMRNILNGSVVQKHPIHAVTFVDNHDSQPGEALESFVQSWFKPLAYALILTREQGYPSVFYGDYYGIPTH---GVPSMKSKIDPLLQARQTYAYGTQHDYFDHHDIIGWTREGDSSHPNSGLATIMSDGPGGNKWMYVGKHKAGQVWRDITGNRSGTVTINADGWGNFTVNGGAVSVWVKQ</seq2>
<ss_1> EEE HHHHHHH HHHHHH EEEE HHHHHHHHHHHH EEEEEE EEE EEEEEEE EEEEE HHHH GGG EEE - EEE EEEE HHHHHHHHHHHHHHHHH EEEE GGG HHHHHHHHHHHHHHH EEEEEE HHHHHHHHHH EEEEHHHHHHHHHH GGG HHHH EEE HHHH HHHHHHHHH EEEEEHHHHH HHHHHHHHHHHH EEEEE EEEEEEE EEEEE EEEEE GGG EEEEE EEE EEEEE EEEEEE </ss_1>
<ss_2> EEE HHHHHH HHHHHH EEEE HHHHHHHHHHHHH EEEEEE EEE EEEEEEE EEEEE HHHH GGG EEE EEE EEEE HHHHHHHHHHHHHHHHH EEEE GGG HHHHHHHHHHHHHHH EEEEEE HHHHHHHHHH EEEEHHHHHHHHHHH GGG HHHH EE HHHHHHHHH EEEHHHH --- HHHHHHHHHHHH EEEEE EEEEEEE EEEEEE EEEEE GGG EEEEE EEEEE EEEEE EEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1E43</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1E43A</entryIDChain>
<sequence>SRKIS-RIFKF</sequence>
<secondary-structure> - EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 1359 CA SER A 166 49.035 39.368 46.862 1.00 13.50 C </line>
<line>ATOM 1365 CA ARG A 167 51.148 36.993 44.801 1.00 12.22 C </line>
<line>ATOM 1376 CA LYS A 168 49.144 37.636 41.643 1.00 12.18 C </line>
<line>ATOM 1385 CA ILE A 169 48.522 33.984 40.907 1.00 12.47 C </line>
<line>ATOM 1393 CA SER A 170 45.556 32.030 39.666 1.00 12.64 C </line>
<line>ATOM 1399 CA ARG A 171 44.869 28.776 41.520 1.00 10.85 C </line>
<line>ATOM 1410 CA ILE A 172 41.727 27.125 42.956 1.00 6.83 C </line>
<line>ATOM 1418 CA PHE A 173 41.739 28.509 46.486 1.00 7.37 C </line>
<line>ATOM 1429 CA LYS A 174 39.565 26.911 49.129 1.00 6.22 C </line>
<line>ATOM 1438 CA PHE A 175 38.913 29.134 52.124 1.00 6.15 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LYS PHE ILE ARG SER ILE LYS ARG SER </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 15.33 15.81 13.09 14.78 12.57 10.85 8.04 5.50 3.79 </line>
<line>ARG CA 16.28 15.95 12.78 13.77 10.85 9.07 5.58 3.80 </line>
<line>LYS CA 16.94 16.21 12.71 12.93 9.84 6.94 3.78 </line>
<line>ILE CA 15.55 14.07 10.35 9.87 6.39 3.76 </line>
<line>SER CA 14.41 12.31 8.57 7.04 3.81 </line>
<line>ARG CA 12.17 9.46 5.88 3.83 </line>
<line>ILE CA 9.80 6.54 3.79 </line>
<line>PHE CA 6.34 3.78 </line>
<line>LYS CA 3.79 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>SER CA 218</line>
<line>ARG CA 206</line>
<line>LYS CA 182</line>
<line>ILE CA 215</line>
<line>SER CA 276</line>
<line>ARG CA 355</line>
<line>ILE CA 446</line>
<line>PHE CA 496</line>
<line>LYS CA 491</line>
<line>PHE CA 463</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2DIE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2DIEA</entryIDChain>
<sequence>SRQLQNKIYKF</sequence>
<secondary-structure> EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 1334 CA SER A 170 9.244 12.463 -25.929 1.00 22.80 C </line>
<line>ATOM 1340 CA ARG A 171 5.930 12.570 -24.071 1.00 25.19 C </line>
<line>ATOM 1351 CA GLN A 172 6.951 13.923 -20.675 1.00 22.79 C </line>
<line>ATOM 1360 CA LEU A 173 4.146 12.264 -18.675 1.00 15.70 C </line>
<line>ATOM 1368 CA GLN A 174 3.997 11.996 -14.867 1.00 16.32 C </line>
<line>ATOM 1377 CA ASN A 175 2.968 8.999 -12.740 1.00 14.29 C </line>
<line>ATOM 1385 CA LYS A 176 4.160 6.472 -15.316 1.00 15.38 C </line>
<line>ATOM 1394 CA ILE A 177 6.188 3.260 -15.294 1.00 10.22 C </line>
<line>ATOM 1402 CA TYR A 178 7.400 1.786 -18.560 1.00 8.64 C </line>
<line>ATOM 1414 CA LYS A 179 8.317 -1.846 -19.131 1.00 7.94 C </line>
<line>ATOM 1423 CA PHE A 180 10.646 -2.454 -22.076 1.00 11.34 C </line>
</atom-coordinate>
<distance-map>
<line> PHE LYS TYR ILE LYS ASN GLN LEU GLN ARG SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 15.47 15.87 13.10 14.39 13.21 15.01 12.25 8.87 5.92 3.80 </line>
<line>ARG CA 15.87 15.42 12.20 12.80 10.82 12.24 9.42 5.69 3.80 </line>
<line>GLN CA 16.85 15.90 12.33 11.97 9.59 10.15 6.80 3.82 </line>
<line>LEU CA 16.44 14.72 10.97 9.83 6.70 6.88 3.82 </line>
<line>GLN CA 17.46 15.11 11.38 9.02 5.54 3.82 </line>
<line>ASN CA 16.65 13.68 10.27 7.06 3.80 </line>
<line>LYS CA 12.94 10.05 6.56 3.80 </line>
<line>ILE CA 9.93 6.73 3.78 </line>
<line>TYR CA 6.39 3.79 </line>
<line>LYS CA 3.80 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>SER CA 218</line>
<line>ARG CA 220</line>
<line>GLN CA 201</line>
<line>LEU CA 213</line>
<line>GLN CA 200</line>
<line>ASN CA 234</line>
<line>LYS CA 350</line>
<line>ILE CA 462</line>
<line>TYR CA 507</line>
<line>LYS CA 477</line>
<line>PHE CA 447</line>
</n14>
</entryChain>
<parallel>
<x>40.46500015258789</x>
<y>23.711000442504883</y>
<z>62.27799987792969</z>
</parallel>
<rotation>
<x>-0.7250000238418579</x>
<y>0.640999972820282</y>
<z>0.2529999911785126</z>
<x>0.4189999997615814</x>
<y>0.7009999752044678</y>
<z>-0.5759999752044678</z>
<x>-0.546999990940094</x>
<y>-0.31200000643730164</y>
<z>-0.7770000100135803</z>
</rotation>
<rmsd>1.0225419998168945</rmsd>
<dmax>2.259613037109375</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2DIE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2DIEA</entryIDChain>
<sequence>GIPTH---GVPSM</sequence>
<secondary-structure> --- </secondary-structure>
<atom-coordinate>
<line>ATOM 3028 CA GLY A 373 24.062 14.873 15.334 1.00 11.66 C </line>
<line>ATOM 3032 CA ILE A 374 22.077 16.224 12.381 1.00 9.63 C </line>
<line>ATOM 3040 CA PRO A 375 22.693 20.028 12.519 1.00 12.63 C </line>
<line>ATOM 3047 CA THR A 376 20.201 20.706 9.715 1.00 15.00 C </line>
<line>ATOM 3054 CA HIS A 377 17.271 19.293 11.685 1.00 15.26 C </line>
<line>ATOM 3064 CA GLY A 378 18.163 20.292 15.234 1.00 17.20 C </line>
<line>ATOM 3068 CA VAL A 379 19.241 16.812 16.328 1.00 15.16 C </line>
<line>ATOM 3075 CA PRO A 380 22.003 17.263 18.945 1.00 15.32 C </line>
<line>ATOM 3082 CA SER A 381 25.131 15.133 19.191 1.00 15.26 C </line>
<line>ATOM 3088 CA MET A 382 24.442 12.168 21.469 1.00 15.76 C </line>
</atom-coordinate>
<distance-map>
<line> MET SER PRO VAL GLY HIS THR PRO ILE GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 6.72 4.01 4.79 5.29 8.01 8.89 8.97 6.03 3.81 </line>
<line>ILE CA 10.23 7.54 6.65 4.90 6.33 5.74 5.54 3.86 </line>
<line>PRO CA 12.04 8.63 7.03 6.06 5.29 5.53 3.81 </line>
<line>THR CA 15.13 12.05 10.01 7.73 5.90 3.80 </line>
<line>HIS CA 14.07 11.64 8.90 5.62 3.79 </line>
<line>GLY CA 12.01 9.53 6.14 3.80 </line>
<line>VAL CA 8.66 6.76 3.83 </line>
<line>PRO CA 6.19 3.79 </line>
<line>SER CA 3.80 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>GLY CA 364</line>
<line>ILE CA 348</line>
<line>PRO CA 217</line>
<line>THR CA 207</line>
<line>HIS CA 231</line>
<line>GLY CA 186</line>
<line>VAL CA 302</line>
<line>PRO CA 254</line>
<line>SER CA 292</line>
<line>MET CA 343</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1E43</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1E43A</entryIDChain>
<sequence>GTKGDSQREIPAL</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 3028 CA GLY A 368 22.146 35.135 13.160 1.00 8.93 C </line>
<line>ATOM 3032 CA THR A 369 25.195 35.467 15.419 1.00 9.59 C </line>
<line>ATOM 3039 CA LYS A 370 27.415 38.511 15.308 1.00 12.30 C </line>
<line>ATOM 3052 CA GLY A 371 30.765 37.063 16.339 1.00 15.57 C </line>
<line>ATOM 3056 CA ASP A 372 33.994 37.575 14.504 1.00 23.52 C </line>
<line>ATOM 3064 CA SER A 373 34.610 34.182 12.903 1.00 23.55 C </line>
<line>ATOM 3070 CA GLN A 374 34.068 33.394 9.221 1.00 28.03 C </line>
<line>ATOM 3079 CA ARG A 375 31.654 30.737 10.388 1.00 21.44 C </line>
<line>ATOM 3090 CA GLU A 376 28.892 32.550 12.233 1.00 11.67 C </line>
<line>ATOM 3099 CA ILE A 377 25.364 31.183 12.266 1.00 9.91 C </line>
<line>ATOM 3107 CA PRO A 378 23.310 32.916 9.558 1.00 10.96 C </line>
<line>ATOM 3114 CA ALA A 379 19.797 34.246 10.176 1.00 9.72 C </line>
<line>ATOM 3119 CA LEU A 380 17.579 31.202 9.590 1.00 10.10 C </line>
</atom-coordinate>
<distance-map>
<line> LEU ALA PRO ILE GLU ARG GLN SER ASP GLY LYS THR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 7.01 3.90 4.39 5.17 7.28 10.84 12.68 12.50 12.17 9.39 6.62 3.81 </line>
<line>THR CA 10.50 7.62 6.66 5.32 5.69 9.46 11.02 9.83 9.09 5.87 3.77 </line>
<line>LYS CA 13.52 10.13 9.01 8.20 6.87 10.13 10.37 8.73 6.69 3.79 </line>
<line>GLY CA 15.93 12.89 10.90 8.96 6.38 8.73 8.66 5.91 3.75 </line>
<line>ASP CA 18.28 15.21 12.66 10.97 7.51 8.32 6.74 3.80 </line>
<line>SER CA 17.60 15.06 11.85 9.74 5.98 5.19 3.80 </line>
<line>GLN CA 16.64 14.33 10.77 9.48 6.05 3.77 </line>
<line>ARG CA 14.11 12.37 8.66 6.58 3.78 </line>
<line>GLU CA 11.70 9.48 6.20 3.78 </line>
<line>ILE CA 8.23 6.69 3.82 </line>
<line>PRO CA 5.98 3.81 </line>
<line>ALA CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>GLY CA 391</line>
<line>THR CA 395</line>
<line>LYS CA 297</line>
<line>GLY CA 263</line>
<line>ASP CA 170</line>
<line>SER CA 165</line>
<line>GLN CA 141</line>
<line>ARG CA 230</line>
<line>GLU CA 308</line>
<line>ILE CA 397</line>
<line>PRO CA 314</line>
<line>ALA CA 314</line>
<line>LEU CA 348</line>
</n14>
</entryChain>
<parallel>
<x>-6.421000003814697</x>
<y>-16.86400032043457</y>
<z>0.4189999997615814</z>
</parallel>
<rotation>
<x>-0.7379999756813049</x>
<y>0.5770000219345093</y>
<z>-0.35100001096725464</z>
<x>0.6740000247955322</x>
<y>0.5950000286102295</y>
<z>-0.4390000104904175</z>
<x>-0.04399999976158142</x>
<y>-0.5600000023841858</y>
<z>-0.8270000219345093</z>
</rotation>
<rmsd>1.9799590110778809</rmsd>
<dmax>4.30104398727417</dmax>
</indel>