NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E4XH-1JGUH
confEVID 1E4XH-1JGUH
pdbIDA 1E4X
pdbIDB 1JGU
pdbChainA H
pdbChainB H
identity 0.692700028419495
indelSize 2
alignment <alignment>
<seq1>QVQLQQPGAELVKPGASVKLSCKASGFTFTNYWMHWVKQRPGQGLEWIGEILPSNGRTNYNEKFKTKATLTVDKSSNTAYMQLSSLTSEDSAVYYCARSP-----SDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRVP</seq1>
<seq2>EVKLVESRGGLVKPGGSLQLSCAASGFTFSGYAMSWFRLTPEKRLEWVASIY-NGFRIHYLDSVKGRFTISSDYARNILYLQMSTLRSEDTAMYYCSRGDAYSRYFDVWGAGTTVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEP---</seq2>
<ss_1> EEE EEE EEEEEEEE EEEEEEE EEEEEEEEE EEEEEGGG EEEEEEE EEEEEEE GGG EEEEEEEE ----- EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEHHHH EEEEEEE EEEEEE </ss_1>
<ss_2> EEE EEE EEEEEEEE EEEEEEEEEE EEEEEEEEE- EEEEEGGG EEEEEEE EEEEEEE GGG EEEEEEEEE EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEE EEEEEEE EEEEEE ---</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1E4X</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1E4XH</entryIDChain>
<sequence>CARSP-----SDYWG</sequence>
<secondary-structure>EEEE ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 751 CA CYS H 92 -11.415 14.620 25.956 1.00 23.07 C </line>
<line>ATOM 757 CA ALA H 93 -10.960 14.661 22.158 1.00 26.78 C </line>
<line>ATOM 762 CA ARG H 94 -11.947 16.520 19.011 1.00 26.14 C </line>
<line>ATOM 773 CA SER H 95 -13.241 15.174 15.739 1.00 23.44 C </line>
<line>ATOM 779 CA PRO H 96 -12.656 15.155 12.747 1.00 24.59 C </line>
<line>ATOM 786 CA SER H 97 -8.801 15.166 12.477 1.00 25.16 C </line>
<line>ATOM 792 CA ASP H 98 -8.851 13.830 15.998 1.00 24.91 C </line>
<line>ATOM 800 CA TYR H 99 -6.528 14.780 18.794 1.00 23.86 C </line>
<line>ATOM 812 CA TRP H 100 -6.944 13.655 22.399 1.00 24.05 C </line>
<line>ATOM 826 CA GLY H 101 -6.120 15.305 25.714 1.00 22.51 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TRP TYR ASP SER PRO SER ARG ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 5.34 5.79 8.67 10.31 13.74 13.28 10.39 7.22 3.83 </line>
<line>ALA CA 6.04 4.15 5.57 6.56 9.93 9.58 6.83 3.79 </line>
<line>ARG CA 8.96 6.69 5.70 5.09 7.38 6.45 3.77 </line>
<line>SER CA 12.26 9.29 7.39 4.60 5.51 3.05 </line>
<line>PRO CA 14.52 11.32 8.62 5.18 3.86 </line>
<line>SER CA 13.51 10.21 6.72 3.77 </line>
<line>ASP CA 10.20 6.68 3.76 </line>
<line>TYR CA 6.95 3.80 </line>
<line>TRP CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 504</line>
<line>ALA CA 447</line>
<line>ARG CA 404</line>
<line>SER CA 300</line>
<line>PRO CA 218</line>
<line>SER CA 192</line>
<line>ASP CA 258</line>
<line>TYR CA 287</line>
<line>TRP CA 360</line>
<line>GLY CA 365</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1JGU</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1JGUH</entryIDChain>
<sequence>CSRGDAYSRYFDVWG</sequence>
<secondary-structure>EEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 2457 CA CYS H 92 9.984 11.585 46.008 1.00 16.72 C </line>
<line>ATOM 2463 CA SER H 93 8.070 9.971 48.882 1.00 15.07 C </line>
<line>ATOM 2469 CA ARG H 94 7.821 10.199 52.658 1.00 19.74 C </line>
<line>ATOM 2480 CA GLY H 95 8.758 7.105 54.613 1.00 19.21 C </line>
<line>ATOM 2484 CA ASP H 96 7.203 6.378 57.994 1.00 21.00 C </line>
<line>ATOM 2492 CA ALA H 97 10.183 5.987 60.322 1.00 25.26 C </line>
<line>ATOM 2497 CA TYR H 98 8.244 3.638 62.587 1.00 25.73 C </line>
<line>ATOM 2509 CA SER H 99 6.686 1.193 60.118 1.00 20.52 C </line>
<line>ATOM 2515 CA ARG H 100 9.062 1.858 57.216 1.00 14.49 C </line>
<line>ATOM 2526 CA TYR H 100A 6.427 2.198 54.486 1.00 14.21 C </line>
<line>ATOM 2538 CA PHE H 100B 5.892 4.983 51.943 1.00 14.40 C </line>
<line>ATOM 2549 CA ASP H 101 2.369 6.394 51.790 1.00 17.29 C </line>
<line>ATOM 2557 CA VAL H 102 2.652 9.810 50.112 1.00 16.48 C </line>
<line>ATOM 2564 CA TRP H 103 4.343 10.035 46.705 1.00 15.29 C </line>
<line>ATOM 2578 CA GLY H 104 5.087 12.894 44.351 1.00 18.33 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TRP VAL ASP PHE TYR ARG SER TYR ALA ASP GLY ARG SER CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 5.33 5.89 8.59 10.88 9.78 13.14 14.87 17.83 18.47 15.37 13.36 9.78 7.13 3.81 </line>
<line>SER CA 6.16 4.32 5.56 7.33 6.24 9.72 11.67 14.33 15.10 12.30 9.83 6.44 3.79 </line>
<line>ARG CA 9.15 6.90 5.78 6.70 5.61 8.32 9.59 11.75 11.91 9.06 6.59 3.78 </line>
<line>GLY CA 12.34 9.52 8.05 7.02 4.45 5.43 5.87 8.34 8.71 5.99 3.79 </line>
<line>ASP CA 15.27 12.21 9.73 7.86 6.35 5.51 4.95 5.63 5.45 3.80 </line>
<line>ALA CA 18.13 15.36 13.25 11.58 9.47 7.91 5.29 5.94 3.80 </line>
<line>TYR CA 20.69 17.56 15.00 12.60 10.98 8.43 5.72 3.81 </line>
<line>SER CA 19.70 16.24 13.81 10.73 9.05 5.73 3.81 </line>
<line>ARG CA 17.41 14.13 12.44 9.74 6.90 3.81 </line>
<line>TYR CA 14.80 11.24 9.56 6.43 3.81 </line>
<line>PHE CA 10.99 7.44 6.10 3.80 </line>
<line>ASP CA 10.25 6.56 3.82 </line>
<line>VAL CA 6.97 3.81 </line>
<line>TRP CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 495</line>
<line>SER CA 454</line>
<line>ARG CA 441</line>
<line>GLY CA 365</line>
<line>ASP CA 262</line>
<line>ALA CA 249</line>
<line>TYR CA 159</line>
<line>SER CA 141</line>
<line>ARG CA 216</line>
<line>TYR CA 216</line>
<line>PHE CA 301</line>
<line>ASP CA 256</line>
<line>VAL CA 310</line>
<line>TRP CA 359</line>
<line>GLY CA 356</line>
</n14>
</entryChain>
<parallel>
<x>-17.143999099731445</x>
<y>6.684999942779541</y>
<z>-33.88999938964844</z>
</parallel>
<rotation>
<x>-0.9369999766349792</x>
<y>-0.1589999943971634</y>
<z>0.3109999895095825</z>
<x>0.050999999046325684</x>
<y>0.8180000185966492</y>
<z>0.5730000138282776</z>
<x>-0.3449999988079071</x>
<y>0.5519999861717224</y>
<z>-0.7590000033378601</z>
</rotation>
<rmsd>1.9548540115356445</rmsd>
<dmax>4.3175811767578125</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1JGU</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1JGUH</entryIDChain>
<sequence>VASIY-NGFRI</sequence>
<secondary-structure>EEEEE- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 2068 CA VAL H 48 17.643 5.799 45.408 1.00 18.31 C </line>
<line>ATOM 2075 CA ALA H 49 18.212 7.578 48.709 1.00 18.07 C </line>
<line>ATOM 2080 CA SER H 50 16.752 8.688 52.031 1.00 17.54 C </line>
<line>ATOM 2086 CA ILE H 51 17.465 11.340 54.639 1.00 24.52 C </line>
<line>ATOM 2094 CA TYR H 52 16.098 11.080 58.161 1.00 31.54 C </line>
<line>ATOM 2106 CA ASN H 53 16.356 13.865 60.718 1.00 38.45 C </line>
<line>ATOM 2114 CA GLY H 54 19.282 15.594 59.036 1.00 40.31 C </line>
<line>ATOM 2118 CA PHE H 55 21.928 12.926 59.652 1.00 40.66 C </line>
<line>ATOM 2129 CA ARG H 56 20.532 9.493 58.867 1.00 35.36 C </line>
<line>ATOM 2140 CA ILE H 57 21.411 9.683 55.165 1.00 29.36 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ARG PHE GLY ASN TYR ILE SER ALA VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.16 14.25 16.49 16.86 17.35 13.89 10.77 7.28 3.79 </line>
<line>ALA CA 7.51 10.59 12.73 13.12 13.68 10.30 7.06 3.79 </line>
<line>SER CA 5.70 7.85 10.14 10.16 10.12 6.61 3.79 </line>
<line>ILE CA 4.31 5.54 6.90 6.38 6.68 3.79 </line>
<line>TYR CA 6.26 4.76 6.29 5.59 3.79 </line>
<line>ASN CA 8.60 6.32 5.75 3.79 </line>
<line>GLY CA 7.38 6.23 3.81 </line>
<line>PHE CA 5.56 3.79 </line>
<line>ARG CA 3.81 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>VAL CA 430</line>
<line>ALA CA 424</line>
<line>SER CA 442</line>
<line>ILE CA 387</line>
<line>TYR CA 337</line>
<line>ASN CA 260</line>
<line>GLY CA 238</line>
<line>PHE CA 185</line>
<line>ARG CA 224</line>
<line>ILE CA 296</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1E4X</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1E4XH</entryIDChain>
<sequence>IGEILPSNGRT</sequence>
<secondary-structure>EEEEE EE</secondary-structure>
<atom-coordinate>
<line>ATOM 377 CA ILE H 48 -19.448 9.064 27.120 1.00 26.00 C </line>
<line>ATOM 385 CA GLY H 49 -20.638 11.525 24.485 1.00 22.12 C </line>
<line>ATOM 389 CA GLU H 50 -19.779 14.568 22.450 1.00 26.22 C </line>
<line>ATOM 398 CA ILE H 51 -20.805 18.168 22.220 1.00 27.19 C </line>
<line>ATOM 406 CA LEU H 52 -20.656 20.557 19.265 1.00 27.15 C </line>
<line>ATOM 414 CA PRO H 52A -19.572 23.977 20.565 1.00 28.01 C </line>
<line>ATOM 421 CA SER H 53 -21.229 26.083 17.837 1.00 31.22 C </line>
<line>ATOM 427 CA ASN H 54 -24.836 25.215 18.714 1.00 36.08 C </line>
<line>ATOM 435 CA GLY H 55 -24.320 23.071 21.849 1.00 30.64 C </line>
<line>ATOM 439 CA ARG H 56 -25.852 19.972 20.172 1.00 34.93 C </line>
<line>ATOM 450 CA THR H 57 -25.029 16.815 22.136 1.00 31.21 C </line>
</atom-coordinate>
<distance-map>
<line> THR ARG GLY ASN SER PRO LEU ILE GLU GLY ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 10.77 14.43 15.74 18.99 19.47 16.29 13.97 10.43 7.23 3.80 </line>
<line>GLY CA 7.27 10.82 12.40 15.44 16.02 13.10 10.43 7.02 3.76 </line>
<line>GLU CA 5.72 8.44 9.66 12.36 12.49 9.60 6.84 3.75 </line>
<line>ILE CA 4.44 5.74 6.04 8.84 9.06 6.16 3.80 </line>
<line>LEU CA 6.43 5.31 5.14 6.28 5.74 3.82 </line>
<line>PRO CA 9.14 7.46 5.00 5.72 3.82 </line>
<line>SER CA 10.90 8.01 5.89 3.81 </line>
<line>ASN CA 9.07 5.54 3.83 </line>
<line>GLY CA 6.30 3.84 </line>
<line>ARG CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ILE CA 404</line>
<line>GLY CA 380</line>
<line>GLU CA 419</line>
<line>ILE CA 389</line>
<line>LEU CA 334</line>
<line>PRO CA 332</line>
<line>SER CA 232</line>
<line>ASN CA 182</line>
<line>GLY CA 250</line>
<line>ARG CA 231</line>
<line>THR CA 295</line>
</n14>
</entryChain>
<parallel>
<x>39.430999755859375</x>
<y>-7.672999858856201</y>
<z>33.051998138427734</z>
</parallel>
<rotation>
<x>-0.6610000133514404</x>
<y>-0.7160000205039978</y>
<z>0.22499999403953552</z>
<x>0.23399999737739563</x>
<y>0.08799999952316284</y>
<z>0.9679999947547913</z>
<x>0.7129999995231628</x>
<y>-0.6919999718666077</y>
<z>-0.10899999737739563</z>
</rotation>
<rmsd>1.4259370565414429</rmsd>
<dmax>1.928205966949463</dmax>
</indel>