NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E4XH-2ATKA
confEVID 1E4XH-2ATKA
pdbIDA 1E4X
pdbIDB 2ATK
pdbChainA H
pdbChainB A
identity 0.812799990177155
indelSize 1
alignment <alignment>
<seq1>QVQLQQPGAELVKPGASVKLSCKASGFTFTNYWMHWVKQRPGQGLEWIGEILPSNGRTNYNEKFKTKATLTVDKSSNTAYMQLSSLTSEDSAVYYCARSPS----DYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRVP</seq1>
<seq2>QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRD-</seq2>
<ss_1> EEE EEE EEEEEEEE EEEEEEE EEEEEEEEE EEEEEGGG EEEEEEE EEEEEEE GGG EEEEEEEE ---- EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEHHHH EEEEEEE EEEEEE </ss_1>
<ss_2> EEE EEE EEEEEE EEEEEEE EEEEEEE EEE EEEEE EEEEEEE GGG EEEEEEEE EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEEEEEEEEEEE EEEEEE EEEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1E4X</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1E4XH</entryIDChain>
<sequence>ARSPS----DYWGQ</sequence>
<secondary-structure>EEE ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 757 CA ALA H 93 -10.960 14.661 22.158 1.00 26.78 C </line>
<line>ATOM 762 CA ARG H 94 -11.947 16.520 19.011 1.00 26.14 C </line>
<line>ATOM 773 CA SER H 95 -13.241 15.174 15.739 1.00 23.44 C </line>
<line>ATOM 779 CA PRO H 96 -12.656 15.155 12.747 1.00 24.59 C </line>
<line>ATOM 786 CA SER H 97 -8.801 15.166 12.477 1.00 25.16 C </line>
<line>ATOM 792 CA ASP H 98 -8.851 13.830 15.998 1.00 24.91 C </line>
<line>ATOM 800 CA TYR H 99 -6.528 14.780 18.794 1.00 23.86 C </line>
<line>ATOM 812 CA TRP H 100 -6.944 13.655 22.399 1.00 24.05 C </line>
<line>ATOM 826 CA GLY H 101 -6.120 15.305 25.714 1.00 22.51 C </line>
<line>ATOM 830 CA GLN H 102 -3.568 13.674 28.048 1.00 30.83 C </line>
</atom-coordinate>
<distance-map>
<line> GLN GLY TRP TYR ASP SER PRO SER ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.50 6.04 4.15 5.57 6.56 9.93 9.58 6.83 3.79 </line>
<line>ARG CA 12.65 8.96 6.69 5.70 5.09 7.38 6.45 3.77 </line>
<line>SER CA 15.73 12.26 9.29 7.39 4.60 5.51 3.05 </line>
<line>PRO CA 17.86 14.52 11.32 8.62 5.18 3.86 </line>
<line>SER CA 16.49 13.51 10.21 6.72 3.77 </line>
<line>ASP CA 13.16 10.20 6.68 3.76 </line>
<line>TYR CA 9.78 6.95 3.80 </line>
<line>TRP CA 6.58 3.79 </line>
<line>GLY CA 3.82 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>ALA CA 447</line>
<line>ARG CA 404</line>
<line>SER CA 300</line>
<line>PRO CA 218</line>
<line>SER CA 192</line>
<line>ASP CA 258</line>
<line>TYR CA 287</line>
<line>TRP CA 360</line>
<line>GLY CA 365</line>
<line>GLN CA 272</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ATK</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2ATKA</entryIDChain>
<sequence>ARERGDGYFAVWGA</sequence>
<secondary-structure>EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 749 CA ALA A 97 138.349 125.994 -17.382 1.00 42.93 C </line>
<line>ATOM 754 CA ARG A 98 137.919 127.209 -20.906 1.00 47.02 C </line>
<line>ATOM 765 CA GLU A 99 139.186 130.446 -22.347 1.00 43.97 C </line>
<line>ATOM 774 CA ARG A 100 138.309 131.592 -25.856 1.00 47.29 C </line>
<line>ATOM 785 CA GLY A 101 141.613 133.428 -26.080 1.00 45.87 C </line>
<line>ATOM 789 CA ASP A 102 140.175 136.702 -24.837 1.00 43.21 C </line>
<line>ATOM 797 CA GLY A 103 141.355 136.485 -21.244 1.00 42.55 C </line>
<line>ATOM 801 CA TYR A 104 138.541 135.174 -19.033 1.00 45.00 C </line>
<line>ATOM 813 CA PHE A 105 137.429 131.730 -17.893 1.00 47.54 C </line>
<line>ATOM 824 CA ALA A 106 133.904 131.480 -19.298 1.00 50.44 C </line>
<line>ATOM 829 CA VAL A 107 133.181 127.948 -18.077 1.00 51.49 C </line>
<line>ATOM 836 CA TRP A 108 134.750 125.800 -15.346 1.00 52.66 C </line>
<line>ATOM 850 CA GLY A 109 134.561 122.135 -14.439 1.00 52.77 C </line>
<line>ATOM 854 CA ALA A 110 133.399 120.838 -11.059 1.00 52.07 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLY TRP VAL ALA PHE TYR GLY ASP GLY ARG GLU ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.54 6.16 4.14 5.57 7.32 5.83 9.33 11.58 13.17 11.90 10.16 6.72 3.75 </line>
<line>ARG CA 12.57 8.88 6.55 5.57 6.08 5.46 8.21 9.90 10.52 8.89 6.62 3.76 </line>
<line>GLU CA 15.91 12.37 9.50 7.78 6.19 4.96 5.81 6.51 6.81 5.36 3.79 </line>
<line>ARG CA 18.94 15.29 12.52 10.00 7.90 8.01 7.71 7.38 5.53 3.79 </line>
<line>GLY CA 21.25 17.69 14.85 12.85 10.45 9.35 7.88 5.73 3.79 </line>
<line>ASP CA 22.08 18.76 15.44 13.09 9.86 8.97 6.22 3.79 </line>
<line>GLY CA 20.29 17.27 13.88 12.24 9.18 7.02 3.81 </line>
<line>TYR CA 17.19 14.39 10.76 9.05 5.93 3.79 </line>
<line>PHE CA 13.48 10.59 6.99 5.69 3.80 </line>
<line>ALA CA 13.47 10.55 6.97 3.81 </line>
<line>VAL CA 9.99 7.00 3.81 </line>
<line>TRP CA 6.70 3.78 </line>
<line>GLY CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ALA CA 436</line>
<line>ARG CA 406</line>
<line>GLU CA 328</line>
<line>ARG CA 266</line>
<line>GLY CA 239</line>
<line>ASP CA 166</line>
<line>GLY CA 190</line>
<line>TYR CA 204</line>
<line>PHE CA 281</line>
<line>ALA CA 250</line>
<line>VAL CA 298</line>
<line>TRP CA 344</line>
<line>GLY CA 333</line>
<line>ALA CA 305</line>
</n14>
</entryChain>
<parallel>
<x>-147.14199829101562</x>
<y>-114.36900329589844</y>
<z>38.07699966430664</z>
</parallel>
<rotation>
<x>-0.9670000076293945</x>
<y>-0.25200000405311584</y>
<z>-0.04899999871850014</z>
<x>0.20800000429153442</x>
<y>-0.6600000262260437</y>
<z>-0.722000002861023</z>
<x>0.15000000596046448</x>
<y>-0.7080000042915344</y>
<z>0.6899999976158142</z>
</rotation>
<rmsd>2.609052896499634</rmsd>
<dmax>5.821753978729248</dmax>
</indel>