NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E4XI-1CF8H
confEVID 1E4XI-1CF8H
pdbIDA 1E4X
pdbIDB 1CF8
pdbChainA I
pdbChainB H
identity 0.639299988746643
indelSize 2
alignment <alignment>
<seq1>QVQLQQPGAELVKPGPSVKLSCKASGFTFT-NYWMHWVKQRPGQGLEWIGEILPSNGRTNYNEKFKTKATLTVDKSSNTAYMQLSSLTSEDSAVYYCARS--PSDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRVPI</seq1>
<seq2>DVQLQESGPGLVKPSQSLSLTCTVTGYSITSGYAWNWIRQFPGNKLEWMGYIRY-SGDTRYNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATYYCAIGYGNSDYWGQGTLVTVSAAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHAFPALLQSDLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKLEPKDC-</seq2>
<ss_1> EEE EEE EEEEEEEE - EEEEEEE EEEEEEEEE EEEEEHHHH EEEEEEE EEEEEEE GGG EEEEEEEE-- EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEHHHH EEEEEEE EEEEE </ss_1>
<ss_2> EEEEE EEEEEEEE EEEEEEEEE EEEEEEEEE - EEEEE EEEEEEE EEEEEEE GGG EEEEEEEEE EEE EEEE EEEEE EEEEEEEEEEEEE EEEEE EEEEE EEEEEEEEEE EEEEEEE EEEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1E4X</pdbID>
<pdbChain>I</pdbChain>
<entryIDChain>1E4XI</entryIDChain>
<sequence>YCARS--PSDYW</sequence>
<secondary-structure>EEEEE-- </secondary-structure>
<atom-coordinate>
<line>ATOM 2376 CA TYR I 91 39.269 8.923 38.568 1.00 30.91 C </line>
<line>ATOM 2388 CA CYS I 92 40.516 7.077 41.636 1.00 34.71 C </line>
<line>ATOM 2394 CA ALA I 93 44.254 6.791 42.355 1.00 35.56 C </line>
<line>ATOM 2399 CA ARG I 94 46.820 5.750 44.981 1.00 33.85 C </line>
<line>ATOM 2410 CA SER I 95 49.830 7.537 46.478 1.00 36.01 C </line>
<line>ATOM 2416 CA PRO I 96 52.872 7.191 46.985 1.00 36.11 C </line>
<line>ATOM 2423 CA SER I 97 54.139 5.375 43.807 1.00 34.40 C </line>
<line>ATOM 2429 CA ASP I 98 50.930 6.587 42.213 1.00 33.64 C </line>
<line>ATOM 2437 CA TYR I 99 48.669 4.565 39.892 1.00 34.13 C </line>
<line>ATOM 2449 CA TRP I 100 45.229 5.736 38.589 1.00 33.54 C </line>
</atom-coordinate>
<distance-map>
<line> TRP TYR ASP SER PRO SER ARG ALA CYS TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 6.76 10.45 12.44 16.16 16.09 13.27 10.40 6.61 3.79 </line>
<line>CYS CA 5.77 8.71 10.44 13.90 13.46 10.51 7.26 3.82 </line>
<line>ALA CA 4.03 5.52 6.68 10.09 9.79 6.97 3.82 </line>
<line>ARG CA 6.59 5.54 5.03 7.42 6.54 3.81 </line>
<line>SER CA 9.31 7.32 4.51 5.51 3.10 </line>
<line>PRO CA 11.45 8.65 5.19 3.87 </line>
<line>SER CA 10.33 6.78 3.78 </line>
<line>ASP CA 6.81 3.82 </line>
<line>TYR CA 3.86 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>TYR CA 428</line>
<line>CYS CA 504</line>
<line>ALA CA 453</line>
<line>ARG CA 403</line>
<line>SER CA 301</line>
<line>PRO CA 218</line>
<line>SER CA 195</line>
<line>ASP CA 262</line>
<line>TYR CA 293</line>
<line>TRP CA 369</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1CF8</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1CF8H</entryIDChain>
<sequence>YCAIGYGNSDYW</sequence>
<secondary-structure>EEEEEE EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 2405 CA TYR H 91 -2.066 -0.921 37.850 1.00 6.03 C </line>
<line>ATOM 2417 CA CYS H 92 -4.678 -2.289 40.193 1.00 13.04 C </line>
<line>ATOM 2423 CA ALA H 93 -3.349 -4.359 43.067 1.00 7.27 C </line>
<line>ATOM 2428 CA ILE H 94 -3.893 -5.869 46.487 1.00 11.83 C </line>
<line>ATOM 2436 CA GLY H 95 -1.703 -7.550 49.020 1.00 15.41 C </line>
<line>ATOM 2440 CA TYR H 96 -0.697 -8.123 52.549 1.00 16.44 C </line>
<line>ATOM 2452 CA GLY H 97 2.480 -9.646 53.902 1.00 22.00 C </line>
<line>ATOM 2456 CA ASN H 98 4.351 -12.114 51.708 1.00 35.03 C </line>
<line>ATOM 2464 CA SER H 99 1.469 -12.235 49.274 1.00 31.10 C </line>
<line>ATOM 2470 CA ASP H 101 0.589 -9.704 46.592 1.00 22.69 C </line>
<line>ATOM 2478 CA TYR H 102 -1.266 -9.646 43.322 1.00 19.36 C </line>
<line>ATOM 2490 CA TRP H 103 -0.870 -6.998 40.607 1.00 17.22 C </line>
</atom-coordinate>
<distance-map>
<line> TRP TYR ASP SER ASN GLY TYR GLY ILE ALA CYS TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 6.78 10.33 12.67 16.46 18.93 18.83 16.43 12.99 10.12 6.38 3.77 </line>
<line>CYS CA 6.07 8.69 11.12 14.80 17.63 17.13 14.23 10.70 7.28 3.78 </line>
<line>ALA CA 4.38 5.69 7.52 11.13 13.93 13.39 10.54 6.95 3.78 </line>
<line>ILE CA 6.71 5.58 5.90 8.78 11.59 10.48 7.21 3.75 </line>
<line>GLY CA 8.47 6.09 3.97 5.66 8.04 6.76 3.71 </line>
<line>TYR CA 12.00 9.37 6.30 5.69 6.49 3.77 </line>
<line>GLY CA 13.96 11.22 7.55 5.40 3.80 </line>
<line>ASN CA 13.29 10.39 6.79 3.77 </line>
<line>SER CA 10.39 7.04 3.79 </line>
<line>ASP CA 6.73 3.76 </line>
<line>TYR CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>TYR CA 443</line>
<line>CYS CA 497</line>
<line>ALA CA 453</line>
<line>ILE CA 396</line>
<line>GLY CA 277</line>
<line>TYR CA 183</line>
<line>GLY CA 102</line>
<line>ASN CA 87</line>
<line>SER CA 153</line>
<line>ASP CA 225</line>
<line>TYR CA 298</line>
<line>TRP CA 348</line>
</n14>
</entryChain>
<parallel>
<x>48.48899841308594</x>
<y>13.784000396728516</y>
<z>-2.1459999084472656</z>
</parallel>
<rotation>
<x>0.5630000233650208</x>
<y>0.7730000019073486</y>
<z>-0.2930000126361847</z>
<x>-0.7239999771118164</x>
<y>0.6320000290870667</y>
<z>0.2770000100135803</z>
<x>0.4000000059604645</x>
<y>0.0560000017285347</y>
<z>0.9150000214576721</z>
</rotation>
<rmsd>1.7774250507354736</rmsd>
<dmax>4.07818078994751</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1CF8</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1CF8H</entryIDChain>
<sequence>GYIRY-SGDTR</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2038 CA GLY H 49 -6.137 5.269 46.067 1.00 12.36 C </line>
<line>ATOM 2042 CA TYR H 50 -8.088 2.216 47.123 1.00 14.34 C </line>
<line>ATOM 2054 CA ILE H 51 -11.597 0.917 47.559 1.00 17.05 C </line>
<line>ATOM 2062 CA ARG H 52 -11.692 -1.284 50.638 1.00 25.89 C </line>
<line>ATOM 2073 CA TYR H 53 -13.653 -4.546 50.685 1.00 28.96 C </line>
<line>ATOM 2085 CA SER H 54 -16.268 -2.824 52.848 1.00 30.89 C </line>
<line>ATOM 2091 CA GLY H 55 -16.769 -0.081 50.268 1.00 28.88 C </line>
<line>ATOM 2095 CA ASP H 56 -15.066 2.990 51.720 1.00 32.43 C </line>
<line>ATOM 2103 CA THR H 57 -12.479 4.718 49.626 1.00 24.72 C </line>
<line>ATOM 2110 CA ARG H 58 -9.186 6.455 50.481 1.00 23.03 C </line>
</atom-coordinate>
<distance-map>
<line> ARG THR ASP GLY SER TYR ARG ILE TYR GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.49 7.29 10.81 12.62 14.63 13.20 9.73 7.14 3.77 </line>
<line>TYR CA 5.52 5.64 8.39 9.51 11.18 9.45 6.13 3.77 </line>
<line>ILE CA 6.71 4.42 5.80 5.92 7.99 6.62 3.79 </line>
<line>ARG CA 8.14 6.14 5.55 5.23 5.31 3.81 </line>
<line>TYR CA 11.88 9.40 7.74 5.46 3.81 </line>
<line>SER CA 11.91 9.03 6.04 3.80 </line>
<line>GLY CA 10.01 6.47 3.80 </line>
<line>ASP CA 6.94 3.75 </line>
<line>THR CA 3.82 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>GLY CA 404</line>
<line>TYR CA 423</line>
<line>ILE CA 390</line>
<line>ARG CA 331</line>
<line>TYR CA 298</line>
<line>SER CA 223</line>
<line>GLY CA 262</line>
<line>ASP CA 228</line>
<line>THR CA 300</line>
<line>ARG CA 287</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1E4X</pdbID>
<pdbChain>I</pdbChain>
<entryIDChain>1E4XI</entryIDChain>
<sequence>GEILPSNGRTN</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2022 CA GLY I 49 39.785 14.054 48.397 1.00 37.48 C </line>
<line>ATOM 2026 CA GLU I 50 41.603 11.053 49.785 1.00 35.79 C </line>
<line>ATOM 2035 CA ILE I 51 41.355 8.417 52.484 1.00 35.03 C </line>
<line>ATOM 2043 CA LEU I 52 44.031 6.222 54.072 1.00 39.58 C </line>
<line>ATOM 2051 CA PRO I 52A 42.352 2.780 54.039 1.00 42.00 C </line>
<line>ATOM 2058 CA SER I 53 44.317 1.676 57.140 1.00 43.82 C </line>
<line>ATOM 2064 CA ASN I 54 42.081 3.678 59.573 1.00 43.69 C </line>
<line>ATOM 2072 CA GLY I 55 39.835 5.582 57.168 1.00 43.61 C </line>
<line>ATOM 2076 CA ARG I 56 41.449 8.971 57.916 1.00 47.09 C </line>
<line>ATOM 2087 CA THR I 57 40.365 11.408 55.168 1.00 45.82 C </line>
<line>ATOM 2094 CA ASN I 58 41.373 14.741 53.637 1.00 41.01 C </line>
</atom-coordinate>
<distance-map>
<line> ASN THR ARG GLY ASN SER PRO LEU ILE GLU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.52 7.29 10.92 12.19 15.42 15.82 12.87 10.56 7.14 3.77 </line>
<line>GLU CA 5.34 5.53 8.39 9.36 12.26 12.22 9.33 6.90 3.78 </line>
<line>ILE CA 6.43 4.14 5.46 5.68 8.56 8.71 5.93 3.81 </line>
<line>LEU CA 8.93 6.44 5.39 5.25 6.37 5.49 3.83 </line>
<line>PRO CA 12.01 8.93 7.36 4.90 5.61 3.83 </line>
<line>SER CA 13.84 10.69 7.88 5.95 3.86 </line>
<line>ASN CA 12.57 9.06 5.58 3.80 </line>
<line>GLY CA 9.94 6.18 3.83 </line>
<line>ARG CA 7.18 3.83 </line>
<line>THR CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLY CA 386</line>
<line>GLU CA 425</line>
<line>ILE CA 380</line>
<line>LEU CA 328</line>
<line>PRO CA 338</line>
<line>SER CA 238</line>
<line>ASN CA 192</line>
<line>GLY CA 255</line>
<line>ARG CA 231</line>
<line>THR CA 294</line>
<line>ASN CA 279</line>
</n14>
</entryChain>
<parallel>
<x>-53.757999420166016</x>
<y>-7.866000175476074</y>
<z>-4.561999797821045</z>
</parallel>
<rotation>
<x>-0.11299999803304672</x>
<y>-0.5170000195503235</y>
<z>-0.8489999771118164</z>
<x>-0.22200000286102295</x>
<y>0.8460000157356262</y>
<z>-0.4860000014305115</z>
<x>-0.968999981880188</x>
<y>-0.13300000131130219</y>
<z>0.20999999344348907</z>
</rotation>
<rmsd>2.520214080810547</rmsd>
<dmax>3.5898470878601074</dmax>
</indel>