NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E4XI-1LO3H
confEVID 1E4XI-1LO3H
pdbIDA 1E4X
pdbIDB 1LO3
pdbChainA I
pdbChainB H
identity 0.701399981975555
indelSize 2
alignment <alignment>
<seq1>QVQLQQPGAELVKPGPSVKLSCKASGFTFTNYWMHWVKQRPGQGLEWIGEILPSNGRTNYNEKFKTKATLTVDKSSNTAYMQLSSLTSEDSAVYYCARSP-----SDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRVPI</seq1>
<seq2>EVKLVESGGGLVKPGGSLKLSCAASGFSFRNYGMSWVRQTPEKRLEWVASISY-GGLIYYPDSIKGRFTISRDIAQNILYLQMSSLRSEDTAMYHCIRGDSFLVWFTFWGQGTLVTVSAAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTQVDKKIEPRGP-</seq2>
<ss_1> EEE EEE EEEEEEEE EEEEEEE EEEEEEEEE EEEEEHHHH EEEEEEE EEEEEEE GGG EEEEEEEE ----- EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEHHHH EEEEEEE EEEEE </ss_1>
<ss_2> EEEEE EEEEEEEE GGG EEEEEEEE EEE EEEE - EEE EEEEEEE EEEEEEE EEEEEEEEE EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEEEEEEEEEHHHH EEEEEEE EEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1E4X</pdbID>
<pdbChain>I</pdbChain>
<entryIDChain>1E4XI</entryIDChain>
<sequence>CARSP-----SDYWG</sequence>
<secondary-structure>EEEE ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 2388 CA CYS I 92 40.516 7.077 41.636 1.00 34.71 C </line>
<line>ATOM 2394 CA ALA I 93 44.254 6.791 42.355 1.00 35.56 C </line>
<line>ATOM 2399 CA ARG I 94 46.820 5.750 44.981 1.00 33.85 C </line>
<line>ATOM 2410 CA SER I 95 49.830 7.537 46.478 1.00 36.01 C </line>
<line>ATOM 2416 CA PRO I 96 52.872 7.191 46.985 1.00 36.11 C </line>
<line>ATOM 2423 CA SER I 97 54.139 5.375 43.807 1.00 34.40 C </line>
<line>ATOM 2429 CA ASP I 98 50.930 6.587 42.213 1.00 33.64 C </line>
<line>ATOM 2437 CA TYR I 99 48.669 4.565 39.892 1.00 34.13 C </line>
<line>ATOM 2449 CA TRP I 100 45.229 5.736 38.589 1.00 33.54 C </line>
<line>ATOM 2463 CA GLY I 101 42.123 3.918 37.360 1.00 36.54 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TRP TYR ASP SER PRO SER ARG ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 5.55 5.77 8.71 10.44 13.90 13.46 10.51 7.26 3.82 </line>
<line>ALA CA 6.14 4.03 5.52 6.68 10.09 9.79 6.97 3.82 </line>
<line>ARG CA 9.14 6.59 5.54 5.03 7.42 6.54 3.81 </line>
<line>SER CA 12.48 9.31 7.32 4.51 5.51 3.10 </line>
<line>PRO CA 14.80 11.45 8.65 5.19 3.87 </line>
<line>SER CA 13.71 10.33 6.78 3.78 </line>
<line>ASP CA 10.40 6.81 3.82 </line>
<line>TYR CA 7.05 3.86 </line>
<line>TRP CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 504</line>
<line>ALA CA 453</line>
<line>ARG CA 403</line>
<line>SER CA 301</line>
<line>PRO CA 218</line>
<line>SER CA 195</line>
<line>ASP CA 262</line>
<line>TYR CA 293</line>
<line>TRP CA 369</line>
<line>GLY CA 360</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LO3</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1LO3H</entryIDChain>
<sequence>CIRGDSFLVWFTFWG</sequence>
<secondary-structure>EEEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 5823 CA CYS H 98 19.444 106.170 11.648 1.00 24.11 C </line>
<line>ATOM 5829 CA ILE H 99 20.197 108.824 9.042 1.00 24.11 C </line>
<line>ATOM 5837 CA ARG H 100 21.477 112.360 8.951 1.00 26.02 C </line>
<line>ATOM 5848 CA GLY H 101 19.978 114.531 6.270 1.00 24.11 C </line>
<line>ATOM 5852 CA ASP H 102 20.430 118.143 5.283 1.00 24.11 C </line>
<line>ATOM 5860 CA SER H 103 17.406 120.298 6.148 1.00 24.11 C </line>
<line>ATOM 5866 CA PHE H 104 15.378 121.297 3.090 1.00 27.64 C </line>
<line>ATOM 5877 CA LEU H 104A 18.084 119.798 0.886 1.00 24.11 C </line>
<line>ATOM 5885 CA VAL H 104B 18.269 115.973 1.198 1.00 28.24 C </line>
<line>ATOM 5892 CA TRP H 105 16.386 113.670 3.560 1.00 24.11 C </line>
<line>ATOM 5906 CA PHE H 106 18.755 110.712 3.832 1.00 24.11 C </line>
<line>ATOM 5917 CA THR H 107 22.297 111.840 3.006 1.00 25.11 C </line>
<line>ATOM 5924 CA PHE H 108 24.220 109.630 5.453 1.00 24.11 C </line>
<line>ATOM 5935 CA TRP H 109 23.013 106.191 6.612 1.00 27.21 C </line>
<line>ATOM 5949 CA GLY H 110 24.126 103.938 9.426 1.00 24.11 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TRP PHE THR PHE TRP VAL LEU PHE SER ASP GLY ARG ILE CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 5.64 6.17 8.55 10.72 9.07 11.45 14.38 17.42 17.85 15.30 13.60 9.96 7.05 3.79 </line>
<line>ILE CA 6.28 4.56 5.45 7.07 5.73 8.25 10.79 13.84 14.64 12.16 10.05 6.35 3.76 </line>
<line>ARG CA 8.84 6.77 5.22 6.02 6.03 7.53 9.14 11.48 12.31 9.35 6.93 3.76 </line>
<line>GLY CA 11.81 8.88 6.53 4.82 4.69 4.58 5.54 7.77 8.78 6.32 3.77 </line>
<line>ASP CA 15.25 12.30 9.32 6.96 7.75 6.27 5.11 5.25 6.35 3.81 </line>
<line>SER CA 17.99 15.19 12.68 10.26 9.95 7.19 6.63 5.33 3.80 </line>
<line>PHE CA 20.45 17.29 14.83 11.72 11.14 7.71 6.35 3.80 </line>
<line>LEU CA 19.00 15.56 12.72 9.25 9.58 6.90 3.84 </line>
<line>VAL CA 15.71 12.15 9.68 6.05 5.90 3.80 </line>
<line>TRP CA 13.75 10.45 9.02 6.21 3.80 </line>
<line>PHE CA 10.30 6.80 5.80 3.81 </line>
<line>THR CA 10.34 6.74 3.82 </line>
<line>PHE CA 6.94 3.82 </line>
<line>TRP CA 3.77 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 507</line>
<line>ILE CA 466</line>
<line>ARG CA 429</line>
<line>GLY CA 349</line>
<line>ASP CA 259</line>
<line>SER CA 246</line>
<line>PHE CA 173</line>
<line>LEU CA 148</line>
<line>VAL CA 194</line>
<line>TRP CA 290</line>
<line>PHE CA 316</line>
<line>THR CA 249</line>
<line>PHE CA 306</line>
<line>TRP CA 342</line>
<line>GLY CA 341</line>
</n14>
</entryChain>
<parallel>
<x>27.65399932861328</x>
<y>-105.16699981689453</y>
<z>36.858001708984375</z>
</parallel>
<rotation>
<x>0.03799999877810478</x>
<y>-0.9919999837875366</y>
<z>-0.11999999731779099</z>
<x>0.4819999933242798</x>
<y>-0.08699999749660492</y>
<z>0.871999979019165</z>
<x>-0.875</x>
<y>-0.09099999815225601</y>
<z>0.4749999940395355</z>
</rotation>
<rmsd>2.2724978923797607</rmsd>
<dmax>5.37230110168457</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1LO3</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1LO3H</entryIDChain>
<sequence>ASISY-GGLIY</sequence>
<secondary-structure>EEEE - EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5455 CA ALA H 49 10.380 108.957 12.085 1.00 26.79 C </line>
<line>ATOM 5460 CA SER H 50 12.458 112.136 11.899 1.00 24.11 C </line>
<line>ATOM 5466 CA ILE H 51 13.349 115.037 14.224 1.00 32.12 C </line>
<line>ATOM 5474 CA SER H 52 14.454 118.467 12.961 1.00 24.11 C </line>
<line>ATOM 5480 CA TYR H 53 17.599 120.267 14.014 1.00 31.40 C </line>
<line>ATOM 5492 CA GLY H 57 15.154 122.246 16.157 1.00 28.55 C </line>
<line>ATOM 5496 CA GLY H 58 13.077 119.520 17.781 1.00 24.11 C </line>
<line>ATOM 5500 CA LEU H 59 10.237 119.145 15.271 1.00 24.11 C </line>
<line>ATOM 5508 CA ILE H 60 9.026 115.553 15.088 1.00 24.11 C </line>
<line>ATOM 5516 CA TYR H 61 7.422 113.697 12.194 1.00 24.11 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ILE LEU GLY GLY TYR SER ILE SER ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 5.59 7.37 10.68 12.30 14.70 13.56 10.38 7.10 3.80 </line>
<line>SER CA 5.28 5.80 8.09 9.46 11.30 9.85 6.72 3.82 </line>
<line>ILE CA 6.41 4.44 5.26 5.73 7.68 6.74 3.82 </line>
<line>SER CA 8.53 6.52 4.86 5.12 5.00 3.77 </line>
<line>TYR CA 12.25 9.84 7.55 5.93 3.81 </line>
<line>GLY CA 12.19 9.14 5.88 3.79 </line>
<line>GLY CA 9.85 6.28 3.81 </line>
<line>LEU CA 6.86 3.80 </line>
<line>ILE CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 434</line>
<line>SER CA 456</line>
<line>ILE CA 404</line>
<line>SER CA 341</line>
<line>TYR CA 301</line>
<line>GLY CA 217</line>
<line>GLY CA 246</line>
<line>LEU CA 230</line>
<line>ILE CA 298</line>
<line>TYR CA 288</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1E4X</pdbID>
<pdbChain>I</pdbChain>
<entryIDChain>1E4XI</entryIDChain>
<sequence>GEILPSNGRTN</sequence>
<secondary-structure>EEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2022 CA GLY I 49 39.785 14.054 48.397 1.00 37.48 C </line>
<line>ATOM 2026 CA GLU I 50 41.603 11.053 49.785 1.00 35.79 C </line>
<line>ATOM 2035 CA ILE I 51 41.355 8.417 52.484 1.00 35.03 C </line>
<line>ATOM 2043 CA LEU I 52 44.031 6.222 54.072 1.00 39.58 C </line>
<line>ATOM 2051 CA PRO I 52A 42.352 2.780 54.039 1.00 42.00 C </line>
<line>ATOM 2058 CA SER I 53 44.317 1.676 57.140 1.00 43.82 C </line>
<line>ATOM 2064 CA ASN I 54 42.081 3.678 59.573 1.00 43.69 C </line>
<line>ATOM 2072 CA GLY I 55 39.835 5.582 57.168 1.00 43.61 C </line>
<line>ATOM 2076 CA ARG I 56 41.449 8.971 57.916 1.00 47.09 C </line>
<line>ATOM 2087 CA THR I 57 40.365 11.408 55.168 1.00 45.82 C </line>
<line>ATOM 2094 CA ASN I 58 41.373 14.741 53.637 1.00 41.01 C </line>
</atom-coordinate>
<distance-map>
<line> ASN THR ARG GLY ASN SER PRO LEU ILE GLU GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 5.52 7.29 10.92 12.19 15.42 15.82 12.87 10.56 7.14 3.77 </line>
<line>GLU CA 5.34 5.53 8.39 9.36 12.26 12.22 9.33 6.90 3.78 </line>
<line>ILE CA 6.43 4.14 5.46 5.68 8.56 8.71 5.93 3.81 </line>
<line>LEU CA 8.93 6.44 5.39 5.25 6.37 5.49 3.83 </line>
<line>PRO CA 12.01 8.93 7.36 4.90 5.61 3.83 </line>
<line>SER CA 13.84 10.69 7.88 5.95 3.86 </line>
<line>ASN CA 12.57 9.06 5.58 3.80 </line>
<line>GLY CA 9.94 6.18 3.83 </line>
<line>ARG CA 7.18 3.83 </line>
<line>THR CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>GLY CA 386</line>
<line>GLU CA 425</line>
<line>ILE CA 380</line>
<line>LEU CA 328</line>
<line>PRO CA 338</line>
<line>SER CA 238</line>
<line>ASN CA 192</line>
<line>GLY CA 255</line>
<line>ARG CA 231</line>
<line>THR CA 294</line>
<line>ASN CA 279</line>
</n14>
</entryChain>
<parallel>
<x>-27.965999603271484</x>
<y>109.12000274658203</y>
<z>-40.138999938964844</z>
</parallel>
<rotation>
<x>-0.3179999887943268</x>
<y>0.44999998807907104</y>
<z>-0.8339999914169312</z>
<x>-0.9319999814033508</x>
<y>-0.3109999895095825</y>
<z>0.18700000643730164</z>
<x>-0.17499999701976776</x>
<y>0.8370000123977661</y>
<z>0.5180000066757202</z>
</rotation>
<rmsd>2.4662539958953857</rmsd>
<dmax>3.7391769886016846</dmax>
</indel>