NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1E4XI-2ATKA
confEVID 1E4XI-2ATKA
pdbIDA 1E4X
pdbIDB 2ATK
pdbChainA I
pdbChainB A
identity 0.808200001716614
indelSize 1
alignment <alignment>
<seq1>QVQLQQPGAELVKPGPSVKLSCKASGFTFTNYWMHWVKQRPGQGLEWIGEILPSNGRTNYNEKFKTKATLTVDKSSNTAYMQLSSLTSEDSAVYYCARSPS----DYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRVPI</seq1>
<seq2>QVQLQQPGAELVKPGASVKLSCKASGYTFTSDWIHWVKQRPGHGLEWIGEIIPSYGRANYNEKIQKKATLTADKSSSTAFMQLSSLTSEDSAVYYCARERGDGYFAVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSSWPSETVTCNVAHPASSTKVDKKIVPRD--</seq2>
<ss_1> EEE EEE EEEEEEEE EEEEEEE EEEEEEEEE EEEEEHHHH EEEEEEE EEEEEEE GGG EEEEEEEE ---- EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEE EEEEEEEEEEEHHHH EEEEEEE EEEEE </ss_1>
<ss_2> EEE EEE EEEEEE EEEEEEE EEEEEEE EEE EEEEE EEEEEEE GGG EEEEEEEE EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEEEEEEEEEEE EEEEEE EEEEEE --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1E4X</pdbID>
<pdbChain>I</pdbChain>
<entryIDChain>1E4XI</entryIDChain>
<sequence>ARSPS----DYWGQ</sequence>
<secondary-structure>EEE ---- </secondary-structure>
<atom-coordinate>
<line>ATOM 2394 CA ALA I 93 44.254 6.791 42.355 1.00 35.56 C </line>
<line>ATOM 2399 CA ARG I 94 46.820 5.750 44.981 1.00 33.85 C </line>
<line>ATOM 2410 CA SER I 95 49.830 7.537 46.478 1.00 36.01 C </line>
<line>ATOM 2416 CA PRO I 96 52.872 7.191 46.985 1.00 36.11 C </line>
<line>ATOM 2423 CA SER I 97 54.139 5.375 43.807 1.00 34.40 C </line>
<line>ATOM 2429 CA ASP I 98 50.930 6.587 42.213 1.00 33.64 C </line>
<line>ATOM 2437 CA TYR I 99 48.669 4.565 39.892 1.00 34.13 C </line>
<line>ATOM 2449 CA TRP I 100 45.229 5.736 38.589 1.00 33.54 C </line>
<line>ATOM 2463 CA GLY I 101 42.123 3.918 37.360 1.00 36.54 C </line>
<line>ATOM 2467 CA GLN I 102 40.525 4.318 33.919 1.00 39.89 C </line>
</atom-coordinate>
<distance-map>
<line> GLN GLY TRP TYR ASP SER PRO SER ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.55 6.14 4.03 5.52 6.68 10.09 9.79 6.97 3.82 </line>
<line>ARG CA 12.81 9.14 6.59 5.54 5.03 7.42 6.54 3.81 </line>
<line>SER CA 15.96 12.48 9.31 7.32 4.51 5.51 3.10 </line>
<line>PRO CA 18.21 14.80 11.45 8.65 5.19 3.87 </line>
<line>SER CA 16.86 13.71 10.33 6.78 3.78 </line>
<line>ASP CA 13.50 10.40 6.81 3.82 </line>
<line>TYR CA 10.10 7.05 3.86 </line>
<line>TRP CA 6.78 3.80 </line>
<line>GLY CA 3.81 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>ALA CA 453</line>
<line>ARG CA 403</line>
<line>SER CA 301</line>
<line>PRO CA 218</line>
<line>SER CA 195</line>
<line>ASP CA 262</line>
<line>TYR CA 293</line>
<line>TRP CA 369</line>
<line>GLY CA 360</line>
<line>GLN CA 273</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2ATK</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2ATKA</entryIDChain>
<sequence>ARERGDGYFAVWGA</sequence>
<secondary-structure>EEE </secondary-structure>
<atom-coordinate>
<line>ATOM 749 CA ALA A 97 138.349 125.994 -17.382 1.00 42.93 C </line>
<line>ATOM 754 CA ARG A 98 137.919 127.209 -20.906 1.00 47.02 C </line>
<line>ATOM 765 CA GLU A 99 139.186 130.446 -22.347 1.00 43.97 C </line>
<line>ATOM 774 CA ARG A 100 138.309 131.592 -25.856 1.00 47.29 C </line>
<line>ATOM 785 CA GLY A 101 141.613 133.428 -26.080 1.00 45.87 C </line>
<line>ATOM 789 CA ASP A 102 140.175 136.702 -24.837 1.00 43.21 C </line>
<line>ATOM 797 CA GLY A 103 141.355 136.485 -21.244 1.00 42.55 C </line>
<line>ATOM 801 CA TYR A 104 138.541 135.174 -19.033 1.00 45.00 C </line>
<line>ATOM 813 CA PHE A 105 137.429 131.730 -17.893 1.00 47.54 C </line>
<line>ATOM 824 CA ALA A 106 133.904 131.480 -19.298 1.00 50.44 C </line>
<line>ATOM 829 CA VAL A 107 133.181 127.948 -18.077 1.00 51.49 C </line>
<line>ATOM 836 CA TRP A 108 134.750 125.800 -15.346 1.00 52.66 C </line>
<line>ATOM 850 CA GLY A 109 134.561 122.135 -14.439 1.00 52.77 C </line>
<line>ATOM 854 CA ALA A 110 133.399 120.838 -11.059 1.00 52.07 C </line>
</atom-coordinate>
<distance-map>
<line> ALA GLY TRP VAL ALA PHE TYR GLY ASP GLY ARG GLU ARG ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 9.54 6.16 4.14 5.57 7.32 5.83 9.33 11.58 13.17 11.90 10.16 6.72 3.75 </line>
<line>ARG CA 12.57 8.88 6.55 5.57 6.08 5.46 8.21 9.90 10.52 8.89 6.62 3.76 </line>
<line>GLU CA 15.91 12.37 9.50 7.78 6.19 4.96 5.81 6.51 6.81 5.36 3.79 </line>
<line>ARG CA 18.94 15.29 12.52 10.00 7.90 8.01 7.71 7.38 5.53 3.79 </line>
<line>GLY CA 21.25 17.69 14.85 12.85 10.45 9.35 7.88 5.73 3.79 </line>
<line>ASP CA 22.08 18.76 15.44 13.09 9.86 8.97 6.22 3.79 </line>
<line>GLY CA 20.29 17.27 13.88 12.24 9.18 7.02 3.81 </line>
<line>TYR CA 17.19 14.39 10.76 9.05 5.93 3.79 </line>
<line>PHE CA 13.48 10.59 6.99 5.69 3.80 </line>
<line>ALA CA 13.47 10.55 6.97 3.81 </line>
<line>VAL CA 9.99 7.00 3.81 </line>
<line>TRP CA 6.70 3.78 </line>
<line>GLY CA 3.80 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ALA CA 436</line>
<line>ARG CA 406</line>
<line>GLU CA 328</line>
<line>ARG CA 266</line>
<line>GLY CA 239</line>
<line>ASP CA 166</line>
<line>GLY CA 190</line>
<line>TYR CA 204</line>
<line>PHE CA 281</line>
<line>ALA CA 250</line>
<line>VAL CA 298</line>
<line>TRP CA 344</line>
<line>GLY CA 333</line>
<line>ALA CA 305</line>
</n14>
</entryChain>
<parallel>
<x>-88.05899810791016</x>
<y>-123.0459976196289</y>
<z>63.82400131225586</z>
</parallel>
<rotation>
<x>-0.1679999977350235</x>
<y>0.6949999928474426</y>
<z>0.6990000009536743</z>
<x>0.8399999737739563</x>
<y>0.47200000286102295</y>
<z>-0.2680000066757202</z>
<x>-0.515999972820282</x>
<y>0.5419999957084656</y>
<z>-0.6629999876022339</z>
</rotation>
<rmsd>2.5956430435180664</rmsd>
<dmax>5.78889799118042</dmax>
</indel>