NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1EPTC-2GCTC
confEVID 1EPTC-2GCTC
pdbIDA 1EPT
pdbIDB 2GCT
pdbChainA C
pdbChainB C
identity 0.463899999856949
indelSize 2
alignment <alignment>
<seq1>SSGSSYPSLLQCLKAPVLSNSSCKSSYPGQITGNMICVGFLQGGKDSCQGDSGGPVVCN----GQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN</seq1>
<seq2>-----TPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASG--VSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN</seq2>
<ss_1> HHHHHHH EEEEE EEEEE ---- EEEEEEEE EEEEEEEEGG HHHHHHHHH </ss_1>
<ss_2>----- HHHHHHHHGGG EEEEE -- EEEEEEE EEEEEEEEEE EEEEEEEE HHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1EPT</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1EPTC</entryIDChain>
<sequence>PVVCN----GQLQG</sequence>
<secondary-structure>EEEE ---- EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1622 CA PRO C 198 33.318 36.821 4.217 1.00 2.00 C </line>
<line>ATOM 1629 CA VAL C 199 31.870 38.797 7.125 1.00 2.00 C </line>
<line>ATOM 1637 CA VAL C 200 30.943 42.093 5.485 1.00 2.00 C </line>
<line>ATOM 1645 CA CYS C 201 29.739 45.091 7.541 1.00 2.00 C </line>
<line>ATOM 1652 CA ASN C 202 28.840 48.430 5.991 1.00 2.00 C </line>
<line>ATOM 1663 CA GLY C 203 30.441 47.354 2.699 1.00 2.00 C </line>
<line>ATOM 1668 CA GLN C 204 33.752 46.423 4.260 1.00 14.85 C </line>
<line>ATOM 1680 CA LEU C 209 35.291 43.007 4.770 1.00 2.00 C </line>
<line>ATOM 1689 CA GLN C 210 35.762 42.995 8.594 1.00 2.85 C </line>
<line>ATOM 1701 CA GLY C 211 36.011 39.259 9.233 1.00 2.00 C </line>
</atom-coordinate>
<distance-map>
<line> GLY GLN LEU GLN GLY ASN CYS VAL VAL PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 6.19 7.95 6.52 9.61 11.02 12.57 9.60 5.92 3.80 </line>
<line>VAL CA 4.67 5.91 5.91 8.36 9.74 10.16 6.66 3.80 </line>
<line>VAL CA 6.91 5.81 4.50 5.30 5.97 6.70 3.83 </line>
<line>CYS CA 8.73 6.46 6.55 5.35 5.39 3.79 </line>
<line>ASN CA 12.08 9.18 8.52 5.58 3.82 </line>
<line>GLY CA 11.80 9.06 6.83 3.78 </line>
<line>GLN CA 9.01 5.88 3.78 </line>
<line>LEU CA 5.87 3.85 </line>
<line>GLN CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>PRO CA 310</line>
<line>VAL CA 356</line>
<line>VAL CA 268</line>
<line>CYS CA 233</line>
<line>ASN CA 136</line>
<line>GLY CA 125</line>
<line>GLN CA 190</line>
<line>LEU CA 270</line>
<line>GLN CA 315</line>
<line>GLY CA 392</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2GCT</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2GCTC</entryIDChain>
<sequence>PLVCKKNGAWTLVG</sequence>
<secondary-structure>EEEEEE EEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1387 CA PRO C 198 20.545 10.307 33.422 1.00 1.00 C </line>
<line>ATOM 1394 CA LEU C 199 20.326 12.587 36.407 1.00 6.79 C </line>
<line>ATOM 1402 CA VAL C 200 17.834 15.272 35.262 1.00 8.15 C </line>
<line>ATOM 1409 CA CYS C 201 16.812 18.636 36.631 1.00 11.29 C </line>
<line>ATOM 1415 CA LYS C 202 13.936 20.897 35.473 1.00 10.47 C </line>
<line>ATOM 1424 CA LYS C 203 15.162 24.171 34.055 1.00 15.23 C </line>
<line>ATOM 1433 CA ASN C 204 12.729 26.741 32.713 1.00 26.15 C </line>
<line>ATOM 1441 CA GLY C 205 10.215 23.905 32.315 1.00 14.86 C </line>
<line>ATOM 1445 CA ALA C 206 12.451 21.421 30.421 1.00 16.57 C </line>
<line>ATOM 1450 CA TRP C 207 14.279 18.434 31.791 1.00 7.53 C </line>
<line>ATOM 1464 CA THR C 208 17.996 18.982 31.571 1.00 13.78 C </line>
<line>ATOM 1471 CA LEU C 209 20.860 16.518 31.682 1.00 6.14 C </line>
<line>ATOM 1479 CA VAL C 210 22.811 17.477 34.694 1.00 2.64 C </line>
<line>ATOM 1486 CA GLY C 211 24.639 14.204 35.743 1.00 8.40 C </line>
</atom-coordinate>
<distance-map>
<line> GLY VAL LEU THR TRP ALA GLY ASN LYS LYS CYS VAL LEU PRO </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>PRO CA 6.11 7.63 6.46 9.23 10.39 14.07 17.11 18.21 14.89 12.65 9.67 5.95 3.76 </line>
<line>LEU CA 4.65 5.75 6.17 8.35 9.59 13.26 15.72 16.48 12.90 10.52 7.00 3.84 </line>
<line>VAL CA 6.91 5.47 4.85 5.24 5.89 9.50 11.89 12.81 9.37 6.85 3.77 </line>
<line>CYS CA 9.04 6.41 6.74 5.21 5.47 8.08 9.48 9.88 6.32 3.84 </line>
<line>LYS CA 12.63 9.54 9.03 5.95 4.44 5.29 5.73 6.57 3.77 </line>
<line>LYS CA 13.86 10.18 9.83 6.41 6.23 5.30 5.25 3.78 </line>
<line>ASN CA 17.56 13.83 13.10 9.45 8.50 5.80 3.81 </line>
<line>GLY CA 17.72 14.34 12.97 9.24 6.84 3.84 </line>
<line>ALA CA 15.13 11.88 9.82 6.17 3.76 </line>
<line>TRP CA 11.87 9.06 6.86 3.76 </line>
<line>THR CA 9.19 5.93 3.78 </line>
<line>LEU CA 6.01 3.71 </line>
<line>VAL CA 3.89 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>PRO CA 272</line>
<line>LEU CA 319</line>
<line>VAL CA 261</line>
<line>CYS CA 221</line>
<line>LYS CA 137</line>
<line>LYS CA 107</line>
<line>ASN CA 76</line>
<line>GLY CA 76</line>
<line>ALA CA 90</line>
<line>TRP CA 135</line>
<line>THR CA 186</line>
<line>LEU CA 254</line>
<line>VAL CA 289</line>
<line>GLY CA 335</line>
</n14>
</entryChain>
<parallel>
<x>13.951000213623047</x>
<y>27.04800033569336</y>
<z>-28.768999099731445</z>
</parallel>
<rotation>
<x>0.8069999814033508</x>
<y>-0.3330000042915344</y>
<z>0.4880000054836273</z>
<x>0.1679999977350235</x>
<y>0.9210000038146973</y>
<z>0.35100001096725464</z>
<x>-0.5659999847412109</x>
<y>-0.20100000500679016</y>
<z>0.7990000247955322</z>
</rotation>
<rmsd>0.32284098863601685</rmsd>
<dmax>0.4814079999923706</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2GCT</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>2GCTC</entryIDChain>
<sequence>AGASG--VSSCM</sequence>
<secondary-structure>E -- </secondary-structure>
<atom-coordinate>
<line>ATOM 1304 CA ALA C 183 23.419 13.675 44.715 1.00 5.58 C </line>
<line>ATOM 1309 CA GLY C 184 21.367 11.528 46.965 1.00 4.77 C </line>
<line>ATOM 1313 CA ALA C 185 22.162 10.596 50.621 1.00 9.94 C </line>
<line>ATOM 1318 CA SER C 186 18.485 10.983 51.003 1.00 26.71 C </line>
<line>ATOM 1324 CA GLY C 187 17.116 7.482 51.554 1.00 9.41 C </line>
<line>ATOM 1328 CA VAL C 188 17.545 6.609 47.804 1.00 5.17 C </line>
<line>ATOM 1335 CA SER C 189 20.480 5.526 45.717 1.00 14.22 C </line>
<line>ATOM 1341 CA SER C 190 21.542 4.864 42.052 1.00 10.35 C </line>
<line>ATOM 1347 CA CYS C 191 23.047 1.253 41.893 1.00 7.78 C </line>
<line>ATOM 1353 CA MET C 192 24.922 -1.177 39.794 1.00 9.73 C </line>
</atom-coordinate>
<distance-map>
<line> MET CYS SER SER VAL GLY SER ALA GLY ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.72 12.74 9.39 8.72 9.69 11.17 8.43 6.78 3.73 </line>
<line>GLY CA 15.02 11.58 8.28 6.19 6.29 7.45 4.99 3.86 </line>
<line>ALA CA 16.23 12.82 10.33 7.25 6.72 6.00 3.72 </line>
<line>SER CA 17.75 14.09 11.27 7.85 5.50 3.80 </line>
<line>GLY CA 16.56 12.93 10.80 7.02 3.87 </line>
<line>VAL CA 13.39 9.69 7.22 3.76 </line>
<line>SER CA 9.99 6.28 3.87 </line>
<line>SER CA 7.28 3.92 </line>
<line>CYS CA 3.72 </line>
<line>MET CA </line>
</distance-map>
<n14>
<line>ALA CA 392</line>
<line>GLY CA 331</line>
<line>ALA CA 264</line>
<line>SER CA 190</line>
<line>GLY CA 162</line>
<line>VAL CA 225</line>
<line>SER CA 300</line>
<line>SER CA 332</line>
<line>CYS CA 271</line>
<line>MET CA 190</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1EPT</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1EPTC</entryIDChain>
<sequence>VGFLQGGKDSCQ</sequence>
<secondary-structure>E </secondary-structure>
<atom-coordinate>
<line>ATOM 1485 CA VAL C 183 30.143 37.982 15.568 1.00 2.00 C </line>
<line>ATOM 1493 CA GLY C 184A 26.832 36.282 16.189 1.00 2.00 C </line>
<line>ATOM 1498 CA PHE C 184 24.394 35.380 18.964 1.00 2.00 C </line>
<line>ATOM 1510 CA LEU C 185 24.919 34.051 22.511 1.00 22.47 C </line>
<line>ATOM 1519 CA GLN C 186 21.475 32.431 22.489 1.00 12.70 C </line>
<line>ATOM 1531 CA GLY C 187 22.831 30.086 19.839 1.00 4.81 C </line>
<line>ATOM 1536 CA GLY C 188A 20.886 28.991 16.778 1.00 10.52 C </line>
<line>ATOM 1541 CA LYS C 188 22.545 31.290 14.219 1.00 2.00 C </line>
<line>ATOM 1554 CA ASP C 189 26.219 30.783 13.339 1.00 6.33 C </line>
<line>ATOM 1563 CA SER C 190 28.769 29.903 10.692 1.00 2.00 C </line>
<line>ATOM 1571 CA CYS C 191 29.845 26.247 10.563 1.00 2.00 C </line>
<line>ATOM 1578 CA GLN C 192 32.173 23.744 8.847 1.00 9.11 C </line>
</atom-coordinate>
<distance-map>
<line> GLN CYS SER ASP LYS GLY GLY GLN LEU PHE GLY VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 15.87 12.76 9.54 8.50 10.21 12.96 11.58 12.40 9.54 7.17 3.77 </line>
<line>GLY CA 15.48 11.89 8.64 6.22 6.87 9.43 8.23 9.12 6.97 3.80 </line>
<line>PHE CA 17.27 13.55 10.84 7.49 6.53 7.61 5.59 5.44 3.82 </line>
<line>LEU CA 18.59 15.10 13.10 9.82 9.06 8.64 5.22 3.81 </line>
<line>GLN CA 19.39 15.83 14.10 10.44 8.42 6.69 3.79 </line>
<line>GLY CA 15.76 12.25 10.91 7.36 5.75 3.79 </line>
<line>GLY CA 14.76 11.24 10.00 6.59 3.82 </line>
<line>LYS CA 13.36 9.60 7.29 3.81 </line>
<line>ASP CA 10.26 6.44 3.78 </line>
<line>SER CA 7.27 3.81 </line>
<line>CYS CA 3.82 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>VAL CA 510</line>
<line>GLY CA 425</line>
<line>PHE CA 338</line>
<line>LEU CA 323</line>
<line>GLN CA 237</line>
<line>GLY CA 279</line>
<line>GLY CA 256</line>
<line>LYS CA 318</line>
<line>ASP CA 422</line>
<line>SER CA 433</line>
<line>CYS CA 360</line>
<line>GLN CA 261</line>
</n14>
</entryChain>
<parallel>
<x>-5.739999771118164</x>
<y>-23.506000518798828</y>
<z>31.429000854492188</z>
</parallel>
<rotation>
<x>0.8370000123977661</x>
<y>-0.10000000149011612</y>
<z>-0.5379999876022339</z>
<x>-0.07100000232458115</x>
<y>0.9549999833106995</y>
<z>-0.2879999876022339</z>
<x>0.5429999828338623</x>
<y>0.27900001406669617</y>
<z>0.7919999957084656</z>
</rotation>
<rmsd>3.09696888923645</rmsd>
<dmax>4.434582233428955</dmax>
</indel>