NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1EP8B-1FAAA
confEVID 1EP8B-1FAAA
pdbIDA 1EP8
pdbIDB 1FAA
pdbChainA B
pdbChainB A
identity 0.3125
indelSize 2
alignment <alignment>
<seq1>-------------GGSVIVIDSKAAWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD-AVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAAA</seq1>
<seq2>LELALGTQEMEAIVGKVTEVN-KDTFWPIVKAA--GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS-</seq2>
<ss_1>------------- EEE HHHHHHHHHHHHH EEEEEE HHHHHHHHHH EEEEE - HHHHHH EEEEEE EEE HHHHHHHHHHHH </ss_1>
<ss_2> HHHHH EEE - HHHHHGGG-- EEEEEE HHHH HHHHHHHHHH - EEEEE HHHHHHH EEEEEE EEE EEHHHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1EP8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1EP8B</entryIDChain>
<sequence>KVDVD-AVAAV</sequence>
<secondary-structure>EEE - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1276 CA LYS B 61 -5.148 29.876 69.763 1.00 18.89 C </line>
<line>ATOM 1285 CA VAL B 62 -1.614 28.823 70.752 1.00 17.14 C </line>
<line>ATOM 1292 CA ASP B 63 -0.900 26.554 73.660 1.00 23.69 C </line>
<line>ATOM 1300 CA VAL B 64 2.618 27.721 74.726 1.00 25.64 C </line>
<line>ATOM 1307 CA ASP B 65 3.153 24.133 75.943 1.00 35.33 C </line>
<line>ATOM 1315 CA ALA B 66 2.513 22.446 72.591 1.00 30.84 C </line>
<line>ATOM 1320 CA VAL B 67 4.168 25.048 70.375 1.00 27.56 C </line>
<line>ATOM 1327 CA ALA B 68 7.242 26.334 72.216 1.00 25.74 C </line>
<line>ATOM 1332 CA ALA B 69 8.928 27.729 69.147 1.00 27.02 C </line>
<line>ATOM 1337 CA VAL B 70 6.103 30.177 68.522 1.00 25.02 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ALA ALA VAL ALA ASP VAL ASP VAL LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.32 14.25 13.12 10.51 11.04 11.84 9.46 6.65 3.82 </line>
<line>VAL CA 8.15 10.72 9.31 6.92 7.82 8.47 5.91 3.76 </line>
<line>ASP CA 9.41 10.88 8.27 6.22 5.45 5.24 3.86 </line>
<line>VAL CA 7.53 8.42 5.44 5.34 5.69 3.83 </line>
<line>ASP CA 10.02 9.62 5.95 5.73 3.81 </line>
<line>ALA CA 9.45 9.00 6.13 3.80 </line>
<line>VAL CA 5.79 5.60 3.81 </line>
<line>ALA CA 5.45 3.77 </line>
<line>ALA CA 3.79 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LYS CA 438</line>
<line>VAL CA 413</line>
<line>ASP CA 341</line>
<line>VAL CA 304</line>
<line>ASP CA 226</line>
<line>ALA CA 213</line>
<line>VAL CA 245</line>
<line>ALA CA 225</line>
<line>ALA CA 196</line>
<line>VAL CA 296</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1FAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1FAAA</entryIDChain>
<sequence>KLDCNQENKTL</sequence>
<secondary-structure>EEE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 543 CA LYS A 70 2.940 4.104 8.620 1.00 26.14 C </line>
<line>ATOM 552 CA LEU A 71 4.811 7.082 7.130 1.00 25.95 C </line>
<line>ATOM 560 CA ASP A 72 3.281 10.259 5.715 1.00 27.49 C </line>
<line>ATOM 568 CA CYS A 73 5.333 10.930 2.618 1.00 30.62 C </line>
<line>ATOM 574 CA ASN A 74 5.458 14.714 2.926 1.00 40.09 C </line>
<line>ATOM 582 CA GLN A 75 8.099 17.485 3.052 1.00 48.95 C </line>
<line>ATOM 591 CA GLU A 76 9.592 16.713 6.460 1.00 45.04 C </line>
<line>ATOM 600 CA ASN A 77 9.967 12.995 5.543 1.00 34.85 C </line>
<line>ATOM 608 CA LYS A 78 11.121 13.517 1.964 1.00 38.04 C </line>
<line>ATOM 617 CA THR A 79 14.566 12.158 2.877 1.00 38.24 C </line>
<line>ATOM 624 CA LEU A 80 13.527 8.818 4.337 1.00 31.04 C </line>
</atom-coordinate>
<distance-map>
<line> LEU THR LYS ASN GLU GLN ASN CYS ASP LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.36 15.26 14.14 11.74 14.42 15.38 12.30 9.40 6.81 3.82 </line>
<line>LEU CA 9.32 11.79 10.39 8.00 10.77 11.65 8.74 5.95 3.80 </line>
<line>ASP CA 10.44 11.79 9.28 7.23 9.06 9.08 5.69 3.78 </line>
<line>CYS CA 8.63 9.32 6.37 5.86 8.15 7.13 3.80 </line>
<line>ASN CA 10.09 9.46 5.87 5.49 5.79 3.83 </line>
<line>GLN CA 10.31 8.38 5.11 5.46 3.80 </line>
<line>GLU CA 9.07 7.64 5.72 3.85 </line>
<line>ASN CA 5.62 5.38 3.80 </line>
<line>LYS CA 5.79 3.81 </line>
<line>THR CA 3.79 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LYS CA 462</line>
<line>LEU CA 430</line>
<line>ASP CA 363</line>
<line>CYS CA 338</line>
<line>ASN CA 257</line>
<line>GLN CA 185</line>
<line>GLU CA 190</line>
<line>ASN CA 266</line>
<line>LYS CA 244</line>
<line>THR CA 203</line>
<line>LEU CA 299</line>
</n14>
</entryChain>
<parallel>
<x>-5.059000015258789</x>
<y>15.07800006866455</y>
<z>67.38099670410156</z>
</parallel>
<rotation>
<x>0.7329999804496765</x>
<y>-0.06499999761581421</y>
<z>-0.6769999861717224</z>
<x>0.3199999928474426</x>
<y>-0.8460000157356262</y>
<z>0.4269999861717224</z>
<x>-0.6000000238418579</x>
<y>-0.5299999713897705</y>
<z>-0.5989999771118164</z>
</rotation>
<rmsd>1.1987470388412476</rmsd>
<dmax>2.7296879291534424</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1FAA</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1FAAA</entryIDChain>
<sequence>VTEVN-KDTFW</sequence>
<secondary-structure> EEE - HH</secondary-structure>
<atom-coordinate>
<line>ATOM 119 CA VAL A 17 -0.356 0.715 13.842 1.00 24.41 C </line>
<line>ATOM 126 CA THR A 18 2.235 3.338 14.672 1.00 23.50 C </line>
<line>ATOM 133 CA GLU A 19 2.952 6.415 12.628 1.00 26.34 C </line>
<line>ATOM 142 CA VAL A 20 6.672 7.161 12.384 1.00 26.01 C </line>
<line>ATOM 149 CA ASN A 21 8.791 9.966 10.887 1.00 35.19 C </line>
<line>ATOM 157 CA LYS A 22 12.257 10.133 9.288 1.00 37.83 C </line>
<line>ATOM 166 CA ASP A 23 13.672 10.280 12.828 1.00 36.94 C </line>
<line>ATOM 174 CA THR A 24 11.804 7.422 14.543 1.00 32.44 C </line>
<line>ATOM 181 CA PHE A 25 11.646 4.941 11.686 1.00 25.75 C </line>
<line>ATOM 192 CA TRP A 26 15.097 3.329 11.910 1.00 25.37 C </line>
</atom-coordinate>
<distance-map>
<line> TRP PHE THR ASP LYS ASN VAL GLU THR VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 15.79 12.91 13.90 17.01 16.39 13.34 9.65 6.70 3.78 </line>
<line>THR CA 13.16 10.00 10.40 13.51 13.25 10.06 6.29 3.76 </line>
<line>GLU CA 12.55 8.87 9.11 11.40 10.56 7.05 3.80 </line>
<line>VAL CA 9.27 5.49 5.57 7.68 7.04 3.82 </line>
<line>ASN CA 9.21 5.83 5.38 5.26 3.82 </line>
<line>LYS CA 7.83 5.75 5.93 3.82 </line>
<line>ASP CA 7.15 5.82 3.82 </line>
<line>THR CA 5.88 3.79 </line>
<line>PHE CA 3.82 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>VAL CA 349</line>
<line>THR CA 344</line>
<line>GLU CA 348</line>
<line>VAL CA 349</line>
<line>ASN CA 303</line>
<line>LYS CA 285</line>
<line>ASP CA 248</line>
<line>THR CA 302</line>
<line>PHE CA 395</line>
<line>TRP CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1EP8</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1EP8B</entryIDChain>
<sequence>VIVIDSKAAWD</sequence>
<secondary-structure> EEE HHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 838 CA VAL B 4 -10.916 29.674 66.761 1.00 18.88 C </line>
<line>ATOM 845 CA ILE B 5 -8.165 27.983 64.790 1.00 18.53 C </line>
<line>ATOM 853 CA VAL B 6 -5.742 26.051 67.002 1.00 19.61 C </line>
<line>ATOM 860 CA ILE B 7 -2.133 26.270 65.978 1.00 18.71 C </line>
<line>ATOM 868 CA ASP B 8 -0.157 23.048 66.466 1.00 26.01 C </line>
<line>ATOM 876 CA SER B 9 3.126 23.817 64.655 1.00 23.17 C </line>
<line>ATOM 882 CA LYS B 10 5.355 26.687 63.620 1.00 21.10 C </line>
<line>ATOM 891 CA ALA B 11 4.505 25.843 60.023 1.00 20.13 C </line>
<line>ATOM 896 CA ALA B 12 0.734 26.335 60.629 1.00 18.54 C </line>
<line>ATOM 901 CA TRP B 13 1.514 29.551 62.412 1.00 19.57 C </line>
<line>ATOM 915 CA ASP B 14 3.537 30.917 59.462 1.00 20.46 C </line>
</atom-coordinate>
<distance-map>
<line> ASP TRP ALA ALA LYS SER ASP ILE VAL ILE VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 16.24 13.17 13.58 17.26 16.84 15.36 12.64 9.45 6.32 3.78 </line>
<line>ILE CA 13.19 10.09 9.96 13.71 13.63 12.04 9.55 6.38 3.81 </line>
<line>VAL CA 12.91 9.27 9.09 12.40 11.62 9.44 6.36 3.76 </line>
<line>ILE CA 9.81 6.06 6.07 8.93 7.86 5.95 3.81 </line>
<line>ASP CA 11.16 7.84 6.76 8.43 7.19 3.83 </line>
<line>SER CA 8.81 6.36 5.32 5.24 3.78 </line>
<line>LYS CA 6.20 4.94 5.52 3.79 </line>
<line>ALA CA 5.20 5.33 3.85 </line>
<line>ALA CA 5.50 3.76 </line>
<line>TRP CA 3.83 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>VAL CA 319</line>
<line>ILE CA 324</line>
<line>VAL CA 300</line>
<line>ILE CA 311</line>
<line>ASP CA 226</line>
<line>SER CA 207</line>
<line>LYS CA 222</line>
<line>ALA CA 173</line>
<line>ALA CA 221</line>
<line>TRP CA 324</line>
<line>ASP CA 265</line>
</n14>
</entryChain>
<parallel>
<x>9.317999839782715</x>
<y>-19.558000564575195</y>
<z>-51.775001525878906</z>
</parallel>
<rotation>
<x>0.7720000147819519</x>
<y>0.39800000190734863</y>
<z>-0.4950000047683716</z>
<x>0.2619999945163727</x>
<y>-0.9089999794960022</y>
<z>-0.3230000138282776</z>
<x>-0.5789999961853027</x>
<y>0.11900000274181366</y>
<z>-0.8059999942779541</z>
</rotation>
<rmsd>1.1787209510803223</rmsd>
<dmax>2.4333269596099854</dmax>
</indel>