NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1EQEA-2G4NF
confEVID 1EQEA-2G4NF
pdbIDA 1EQE
pdbIDB 2G4N
pdbChainA A
pdbChainB F
identity 0.343800008296967
indelSize 3
alignment <alignment>
<seq1>KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRNVRQYVQGCGV</seq1>
<seq2>EQLTKCEVFREL--KDLKGYGGVSLPEWVCTTFHTSGYDTQAIVQNND--STEYGLFQINNKIWCKDDQNPHSSNICNISCDKFLDDDLTDDIMCVKKILDK-VGINYWLAHKALCSEK-LDQWLCEK--</seq2>
<ss_1> HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGGG HHHHHHHHHH GGGG HHHHH </ss_1>
<ss_2> HHHHHHH --GGG GGG HHHHHHHHHH EEEEE --EEEEE EE GGGG HHHHHHHHHHHH - GGG HHHH -GGGG --</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>VQNND--STEYG</sequence>
<secondary-structure>EEE --EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5213 CA VAL F 42 57.447 20.019 115.877 1.00 37.52 C </line>
<line>ATOM 5220 CA GLN F 43 59.735 17.071 116.847 1.00 40.70 C </line>
<line>ATOM 5229 CA ASN F 44 61.110 16.263 120.380 1.00 46.91 C </line>
<line>ATOM 5237 CA ASN F 45 63.107 13.101 120.092 1.00 48.98 C </line>
<line>ATOM 5245 CA ASP F 46 60.585 10.573 121.273 1.00 48.65 C </line>
<line>ATOM 5253 CA SER F 47 57.509 12.362 119.810 1.00 43.83 C </line>
<line>ATOM 5259 CA THR F 48 56.163 14.628 117.058 1.00 40.01 C </line>
<line>ATOM 5266 CA GLU F 49 53.262 17.054 117.116 1.00 39.86 C </line>
<line>ATOM 5275 CA TYR F 50 51.080 17.791 114.131 1.00 37.25 C </line>
<line>ATOM 5287 CA GLY F 51 49.369 20.850 112.589 1.00 39.22 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR GLU THR SER ASP ASN ASN GLN VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 8.76 6.97 5.28 5.67 8.61 11.32 9.88 6.91 3.86 </line>
<line>GLN CA 11.83 9.10 6.48 4.33 5.99 7.91 6.14 3.88 </line>
<line>ASN CA 14.82 11.92 8.54 6.18 5.34 5.78 3.75 </line>
<line>ASN CA 17.47 14.22 11.02 7.73 5.65 3.76 </line>
<line>ASP CA 17.52 13.91 10.63 7.33 3.85 </line>
<line>SER CA 13.80 10.15 6.88 3.81 </line>
<line>THR CA 10.24 6.66 3.78 </line>
<line>GLU CA 7.08 3.77 </line>
<line>TYR CA 3.83 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>VAL CA 266</line>
<line>GLN CA 210</line>
<line>ASN CA 158</line>
<line>ASN CA 136</line>
<line>ASP CA 177</line>
<line>SER CA 249</line>
<line>THR CA 309</line>
<line>GLU CA 406</line>
<line>TYR CA 445</line>
<line>GLY CA 441</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1EQE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1EQEA</entryIDChain>
<sequence>NYNAGDRSTDYG</sequence>
<secondary-structure>EEE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 350 CA ASN A 44 4.992 5.365 24.919 1.00 12.57 C </line>
<line>ATOM 358 CA TYR A 45 3.781 2.284 26.741 1.00 10.97 C </line>
<line>ATOM 370 CA ASN A 46 6.343 -0.348 27.712 1.00 11.49 C </line>
<line>ATOM 378 CA ALA A 47 4.397 -3.634 27.967 1.00 11.80 C </line>
<line>ATOM 383 CA GLY A 48 7.412 -5.436 29.380 1.00 11.07 C </line>
<line>ATOM 387 CA ASP A 49 7.683 -3.541 32.665 1.00 10.74 C </line>
<line>ATOM 395 CA ARG A 50 4.282 -1.795 32.550 1.00 11.50 C </line>
<line>ATOM 406 CA SER A 51 5.774 1.724 32.564 1.00 9.28 C </line>
<line>ATOM 412 CA THR A 52 5.082 4.708 30.282 1.00 7.40 C </line>
<line>ATOM 419 CA ASP A 53 7.407 7.428 28.932 1.00 6.18 C </line>
<line>ATOM 427 CA TYR A 54 5.781 10.864 28.965 1.00 6.39 C </line>
<line>ATOM 439 CA GLY A 55 6.152 14.098 27.076 1.00 4.86 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TYR ASP THR SER ARG ASP GLY ALA ASN TYR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 9.07 6.87 5.12 5.40 8.50 10.49 12.11 11.93 9.52 6.50 3.78 </line>
<line>TYR CA 12.05 9.09 6.66 4.48 6.18 7.12 9.18 8.93 6.07 3.80 </line>
<line>ASN CA 14.46 11.30 7.94 5.81 5.31 5.45 6.04 5.46 3.83 </line>
<line>ALA CA 17.84 14.60 11.50 8.68 7.19 4.94 5.73 3.79 </line>
<line>GLY CA 19.71 16.39 12.87 10.45 8.01 5.75 3.80 </line>
<line>ASP CA 18.57 14.99 11.59 8.97 5.60 3.82 </line>
<line>ARG CA 16.91 13.24 10.39 6.93 3.82 </line>
<line>SER CA 13.54 9.82 6.96 3.82 </line>
<line>THR CA 9.98 6.33 3.82 </line>
<line>ASP CA 7.04 3.80 </line>
<line>TYR CA 3.76 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ASN CA 264</line>
<line>TYR CA 230</line>
<line>ASN CA 199</line>
<line>ALA CA 140</line>
<line>GLY CA 129</line>
<line>ASP CA 170</line>
<line>ARG CA 199</line>
<line>SER CA 262</line>
<line>THR CA 325</line>
<line>ASP CA 414</line>
<line>TYR CA 438</line>
<line>GLY CA 421</line>
</n14>
</entryChain>
<parallel>
<x>52.965999603271484</x>
<y>13.621999740600586</y>
<z>89.99400329589844</z>
</parallel>
<rotation>
<x>-0.4300000071525574</x>
<y>0.17599999904632568</y>
<z>0.8849999904632568</z>
<x>-0.7559999823570251</x>
<y>0.4659999907016754</y>
<z>-0.46000000834465027</z>
<x>-0.49399998784065247</x>
<y>-0.8669999837875366</y>
<z>-0.06700000166893005</z>
</rotation>
<rmsd>1.4860199689865112</rmsd>
<dmax>3.0474579334259033</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>KILDK-VGINY</sequence>
<secondary-structure>HHHH - GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 5630 CA LYS F 94 38.396 13.940 122.868 1.00 39.73 C </line>
<line>ATOM 5639 CA ILE F 95 41.516 15.589 124.251 1.00 36.30 C </line>
<line>ATOM 5647 CA LEU F 96 39.496 18.085 126.226 1.00 36.26 C </line>
<line>ATOM 5655 CA ASP F 97 37.175 15.237 127.305 1.00 38.33 C </line>
<line>ATOM 5663 CA LYS F 98 40.090 13.237 128.636 1.00 37.69 C </line>
<line>ATOM 5672 CA VAL F 99 42.854 15.597 129.808 1.00 38.35 C </line>
<line>ATOM 5679 CA GLY F 100 41.256 19.059 129.215 1.00 37.02 C </line>
<line>ATOM 5683 CA ILE F 101 42.672 22.345 127.896 1.00 38.18 C </line>
<line>ATOM 5691 CA ASN F 102 45.947 21.999 129.829 1.00 39.98 C </line>
<line>ATOM 5699 CA TYR F 103 47.150 19.720 127.022 1.00 40.59 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASN ILE GLY VAL LYS ASP LEU ILE LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 11.28 13.05 10.69 8.64 8.41 6.05 4.78 5.45 3.79 </line>
<line>ILE CA 7.52 9.58 7.76 6.06 5.72 5.18 5.32 3.77 </line>
<line>LEU CA 7.87 8.36 5.57 3.60 5.50 5.45 3.83 </line>
<line>ASP CA 10.94 11.36 9.00 5.91 6.22 3.78 </line>
<line>LYS CA 9.72 10.61 9.50 5.97 3.82 </line>
<line>VAL CA 6.57 7.11 7.02 3.86 </line>
<line>GLY CA 6.32 5.57 3.81 </line>
<line>ILE CA 5.26 3.82 </line>
<line>ASN CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>LYS CA 310</line>
<line>ILE CA 351</line>
<line>LEU CA 311</line>
<line>ASP CA 226</line>
<line>LYS CA 207</line>
<line>VAL CA 236</line>
<line>GLY CA 273</line>
<line>ILE CA 353</line>
<line>ASN CA 276</line>
<line>TYR CA 345</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1EQE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1EQEA</entryIDChain>
<sequence>RVVRDPQGIRA</sequence>
<secondary-structure>HH GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 754 CA ARG A 98 16.311 16.256 38.121 1.00 5.47 C </line>
<line>ATOM 765 CA VAL A 99 17.065 13.319 35.847 1.00 4.76 C </line>
<line>ATOM 772 CA VAL A 100 20.545 14.634 34.980 1.00 6.89 C </line>
<line>ATOM 779 CA ARG A 101 21.323 15.374 38.623 1.00 14.86 C </line>
<line>ATOM 790 CA ASP A 102 22.050 11.633 38.941 1.00 17.97 C </line>
<line>ATOM 798 CA PRO A 103 25.139 9.429 38.168 1.00 14.63 C </line>
<line>ATOM 805 CA GLN A 104 24.765 9.271 34.348 1.00 12.24 C </line>
<line>ATOM 814 CA GLY A 105 23.840 12.847 33.507 1.00 11.31 C </line>
<line>ATOM 818 CA ILE A 106 22.450 13.232 29.963 1.00 10.37 C </line>
<line>ATOM 826 CA ARG A 107 23.397 9.590 29.324 1.00 10.92 C </line>
<line>ATOM 837 CA ALA A 108 20.301 8.529 31.281 1.00 11.80 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ARG ILE GLY GLN PRO ASP ARG VAL VAL ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 11.06 13.12 10.65 9.47 11.60 11.16 7.41 5.11 5.52 3.79 </line>
<line>VAL CA 7.37 9.83 7.98 7.18 8.83 9.26 6.10 5.48 3.82 </line>
<line>VAL CA 7.14 8.10 5.55 4.03 6.85 7.64 5.19 3.80 </line>
<line>ARG CA 10.09 11.15 8.99 6.24 8.21 7.08 3.82 </line>
<line>ASP CA 8.45 9.92 9.13 5.85 5.83 3.87 </line>
<line>PRO CA 8.46 9.02 9.43 5.92 3.84 </line>
<line>GLN CA 5.47 5.22 6.35 3.79 </line>
<line>GLY CA 6.01 5.32 3.83 </line>
<line>ILE CA 5.34 3.82 </line>
<line>ARG CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>ARG CA 335</line>
<line>VAL CA 392</line>
<line>VAL CA 340</line>
<line>ARG CA 240</line>
<line>ASP CA 221</line>
<line>PRO CA 168</line>
<line>GLN CA 222</line>
<line>GLY CA 293</line>
<line>ILE CA 385</line>
<line>ARG CA 312</line>
<line>ALA CA 342</line>
</n14>
</entryChain>
<parallel>
<x>19.38800048828125</x>
<y>3.315000057220459</y>
<z>91.48400115966797</z>
</parallel>
<rotation>
<x>-0.210999995470047</x>
<y>0.23499999940395355</y>
<z>0.9490000009536743</z>
<x>-0.8600000143051147</x>
<y>0.4169999957084656</y>
<z>-0.29499998688697815</z>
<x>-0.4650000035762787</x>
<y>-0.878000020980835</y>
<z>0.11400000005960464</z>
</rotation>
<rmsd>1.079995036125183</rmsd>
<dmax>2.358336925506592</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2G4N</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>2G4NF</entryIDChain>
<sequence>LCSEK-LDQWL</sequence>
<secondary-structure> -GGGG </secondary-structure>
<atom-coordinate>
<line>ATOM 5762 CA LEU F 110 49.413 33.080 127.746 1.00 37.41 C </line>
<line>ATOM 5770 CA CYS F 111 45.743 32.564 126.954 1.00 36.96 C </line>
<line>ATOM 5776 CA SER F 112 43.816 32.690 130.254 1.00 32.33 C </line>
<line>ATOM 5782 CA GLU F 113 44.083 36.550 130.540 1.00 31.11 C </line>
<line>ATOM 5791 CA LYS F 114 43.902 39.584 128.332 1.00 31.21 C </line>
<line>ATOM 5800 CA LEU F 115 41.570 38.167 125.655 1.00 32.58 C </line>
<line>ATOM 5808 CA ASP F 116 40.250 41.187 123.740 1.00 37.80 C </line>
<line>ATOM 5816 CA GLN F 117 43.484 41.292 121.628 1.00 40.53 C </line>
<line>ATOM 5825 CA TRP F 118 42.490 37.933 120.077 1.00 41.93 C </line>
<line>ATOM 5839 CA LEU F 119 39.177 39.086 118.690 1.00 43.75 C </line>
</atom-coordinate>
<distance-map>
<line> LEU TRP GLN ASP LEU LYS GLU SER CYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 14.93 11.41 11.83 12.87 9.58 8.54 6.95 6.15 3.79 </line>
<line>CYS CA 12.41 9.31 10.47 10.72 7.11 7.39 5.61 3.82 </line>
<line>SER CA 14.01 11.52 12.19 11.28 7.50 7.16 3.88 </line>
<line>GLU CA 13.07 10.67 10.11 9.08 5.73 3.76 </line>
<line>LYS CA 10.75 8.54 6.93 6.08 3.82 </line>
<line>LEU CA 7.42 5.66 5.44 3.81 </line>
<line>ASP CA 5.57 5.39 3.86 </line>
<line>GLN CA 5.66 3.83 </line>
<line>TRP CA 3.77 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>LEU CA 247</line>
<line>CYS CA 297</line>
<line>SER CA 251</line>
<line>GLU CA 196</line>
<line>LYS CA 176</line>
<line>LEU CA 235</line>
<line>ASP CA 180</line>
<line>GLN CA 214</line>
<line>TRP CA 294</line>
<line>LEU CA 252</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1EQE</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1EQEA</entryIDChain>
<sequence>RCQNRNVRQYV</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 901 CA ARG A 115 21.595 9.783 18.095 1.00 13.77 C </line>
<line>ATOM 912 CA CYS A 116 23.351 12.639 19.911 1.00 10.13 C </line>
<line>ATOM 918 CA GLN A 117 26.455 11.389 21.691 1.00 13.97 C </line>
<line>ATOM 927 CA ASN A 118 29.566 12.083 19.630 1.00 20.00 C </line>
<line>ATOM 935 CA ARG A 119 27.649 13.507 16.676 1.00 20.90 C </line>
<line>ATOM 946 CA ASN A 120 27.014 17.122 15.668 1.00 22.87 C </line>
<line>ATOM 954 CA VAL A 121 24.190 18.684 17.667 1.00 16.12 C </line>
<line>ATOM 961 CA ARG A 122 24.985 22.382 16.957 1.00 17.57 C </line>
<line>ATOM 972 CA GLN A 123 22.714 22.055 13.898 1.00 15.85 C </line>
<line>ATOM 981 CA TYR A 124 19.727 21.957 16.265 1.00 11.77 C </line>
<line>ATOM 993 CA VAL A 125 20.261 25.527 17.539 1.00 8.14 C </line>
</atom-coordinate>
<distance-map>
<line> VAL TYR GLN ARG VAL ASN ARG ASN GLN CYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 15.81 12.45 13.02 13.10 9.28 9.44 7.25 8.44 6.26 3.81 </line>
<line>CYS CA 13.46 10.64 11.19 10.31 6.50 7.18 5.45 6.25 3.79 </line>
<line>GLN CA 15.98 13.65 13.73 12.06 8.63 8.33 5.57 3.80 </line>
<line>ASN CA 16.48 14.34 13.39 11.58 8.74 6.90 3.80 </line>
<line>ARG CA 14.14 11.59 10.25 9.27 6.30 3.81 </line>
<line>ASN CA 10.94 8.77 6.78 5.78 3.80 </line>
<line>VAL CA 7.89 5.71 5.27 3.85 </line>
<line>ARG CA 5.70 5.32 3.82 </line>
<line>GLN CA 5.60 3.81 </line>
<line>TYR CA 3.83 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ARG CA 264</line>
<line>CYS CA 312</line>
<line>GLN CA 278</line>
<line>ASN CA 197</line>
<line>ARG CA 205</line>
<line>ASN CA 219</line>
<line>VAL CA 306</line>
<line>ARG CA 261</line>
<line>GLN CA 237</line>
<line>TYR CA 334</line>
<line>VAL CA 296</line>
</n14>
</entryChain>
<parallel>
<x>18.9689998626709</x>
<y>21.573999404907227</y>
<z>108.79000091552734</z>
</parallel>
<rotation>
<x>-0.3840000033378601</x>
<y>0.42399999499320984</y>
<z>0.8209999799728394</z>
<x>-0.6949999928474426</x>
<y>0.4519999921321869</y>
<z>-0.5590000152587891</z>
<x>-0.6079999804496765</x>
<y>-0.7850000262260437</y>
<z>0.12099999934434891</z>
</rotation>
<rmsd>1.4961580038070679</rmsd>
<dmax>2.34712290763855</dmax>
</indel>