NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1EUZE-1HRDA
confEVID 1EUZE-1HRDA
pdbIDA 1EUZ
pdbIDB 1HRD
pdbChainA E
pdbChainB A
identity 0.294400006532669
indelSize 3
alignment <alignment>
<seq1>IDPFEMAVK--------------QLERAAQYMDISEEAL------------EWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVSDSRGGIYNPDGL-------DPDEVL--------KWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNI---KAKIVAEVANGPVTPEADDILREK-GILQIPDFLCNAGGVTVSYFEWVQNINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNI--HMRDAAYVVAVSRVYQAMKDRGWVKK</seq1>
<seq2>SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSL---GPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVG--GFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAE-LGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKF-------GVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW-</seq2>
<ss_1> HHHHH--------------HHHHHGGG HHHH------------HHH EEEEEEEEEEE EEEEEEEEEEEEE EE EE HHHHHHHHHHHHHHHHH EEEEEEE HHHHHHHHHHHHHHH EE HHHHHHHHHHHHHH HHHHHHHHHHHHHHHH EEEEE HHHHHHHHHHH EEEEEEE EEEEE ------- HHHHH--------HHHHHH EEE HHHHH EEE GGG --- EEE HHHHHHH - EEE HHHH HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH -- HHHHHHHHHHHHHHHHHHH </ss_1>
<ss_2> HHHHHHHHHHHH HHHHHHHHHHHGGG---HHHH HHHH HHHHH EEEEEEEEEEE EEEEEEEEEEEEE EEEEEE HHHHHHHHHHHHHHHHH EEEEEE HHHHHHHHHHHHHHGGGG EEEEEE HHHHHHHHHHHHHH -- GGG HHHHHHHHHHHHHHHH EEE HHHHHHHHHHHH- EEEEEEEEEEEEEE HHHHHHHHHHHHH HHHHHH ------- EEE EEE HHHHHHHHH EE HHHHHHH EEE HHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHH EEHHHHHHHHHHHHHHHHHHH -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1EUZ</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1EUZE</entryIDChain>
<sequence>KDKNI--HMRDA</sequence>
<secondary-structure>HH -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 15878 CA LYS E 389 7.196 -49.163 158.817 1.00 40.29 C </line>
<line>ATOM 15887 CA ASP E 390 6.019 -45.779 160.169 1.00 40.80 C </line>
<line>ATOM 15895 CA LYS E 391 4.358 -44.777 156.905 1.00 36.66 C </line>
<line>ATOM 15904 CA ASN E 392 3.312 -48.370 156.258 1.00 35.86 C </line>
<line>ATOM 15912 CA ILE E 393 4.571 -48.407 152.685 1.00 30.43 C </line>
<line>ATOM 15920 CA HIS E 394 6.549 -50.659 150.369 1.00 31.41 C </line>
<line>ATOM 15930 CA MET E 395 10.345 -50.444 150.900 1.00 26.45 C </line>
<line>ATOM 15938 CA ARG E 396 10.751 -48.909 147.423 1.00 27.44 C </line>
<line>ATOM 15949 CA ASP E 397 8.214 -46.149 147.986 1.00 31.61 C </line>
<line>ATOM 15957 CA ALA E 398 9.909 -45.410 151.312 1.00 24.11 C </line>
</atom-coordinate>
<distance-map>
<line> ALA ASP ARG MET HIS ILE ASN LYS ASP LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 8.82 11.29 11.94 8.62 8.60 6.71 4.72 5.56 3.83 </line>
<line>ASP CA 9.68 12.38 13.95 11.24 10.96 8.06 5.42 3.80 </line>
<line>LYS CA 7.91 9.81 12.16 10.20 9.06 5.57 3.80 </line>
<line>ASN CA 8.76 9.87 11.56 9.08 7.10 3.79 </line>
<line>ILE CA 6.27 6.36 8.13 6.38 3.79 </line>
<line>HIS CA 6.30 5.37 5.42 3.84 </line>
<line>MET CA 5.07 5.61 3.82 </line>
<line>ARG CA 5.30 3.79 </line>
<line>ASP CA 3.81 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LYS CA 250</line>
<line>ASP CA 189</line>
<line>LYS CA 217</line>
<line>ASN CA 236</line>
<line>ILE CA 315</line>
<line>HIS CA 405</line>
<line>MET CA 494</line>
<line>ARG CA 533</line>
<line>ASP CA 450</line>
<line>ALA CA 440</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1HRD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HRDA</entryIDChain>
<sequence>ERYGLGYNLVAG</sequence>
<secondary-structure>HH EEHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 3221 CA GLU A 418 -39.199 -6.196 71.962 1.00 36.33 C </line>
<line>ATOM 3230 CA ARG A 419 -37.190 -9.164 73.028 1.00 21.92 C </line>
<line>ATOM 3241 CA TYR A 420 -37.513 -7.722 76.595 1.00 27.58 C </line>
<line>ATOM 3253 CA GLY A 421 -41.230 -7.071 76.314 1.00 31.71 C </line>
<line>ATOM 3257 CA LEU A 422 -40.928 -3.324 75.987 1.00 33.79 C </line>
<line>ATOM 3265 CA GLY A 423 -42.555 -3.158 72.627 1.00 31.71 C </line>
<line>ATOM 3269 CA TYR A 424 -41.371 -0.514 70.108 1.00 38.89 C </line>
<line>ATOM 3281 CA ASN A 425 -39.320 1.461 72.552 1.00 23.07 C </line>
<line>ATOM 3289 CA LEU A 426 -36.425 2.801 70.466 1.00 24.86 C </line>
<line>ATOM 3297 CA VAL A 427 -35.056 4.642 73.517 1.00 21.74 C </line>
<line>ATOM 3304 CA ALA A 428 -34.529 1.525 75.647 1.00 33.48 C </line>
<line>ATOM 3309 CA GLY A 429 -33.732 -0.566 72.550 1.00 24.66 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ALA VAL LEU ASN TYR GLY LEU GLY TYR ARG GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 7.87 9.75 11.71 9.53 7.68 6.36 4.58 5.24 4.88 5.16 3.74 </line>
<line>ARG CA 9.28 11.32 13.98 12.26 10.85 10.04 8.06 7.54 5.61 3.86 </line>
<line>TYR CA 9.05 9.76 12.98 12.23 10.20 10.44 7.87 5.60 3.78 </line>
<line>GLY CA 10.62 10.92 13.53 12.44 9.52 9.03 5.54 3.77 </line>
<line>LEU CA 8.44 8.04 10.20 9.40 6.11 6.53 3.74 </line>
<line>GLY CA 9.20 9.77 10.86 8.82 5.64 3.84 </line>
<line>TYR CA 8.02 9.04 8.84 5.96 3.75 </line>
<line>ASN CA 5.94 5.70 5.41 3.81 </line>
<line>LEU CA 4.79 5.66 3.82 </line>
<line>VAL CA 5.46 3.81 </line>
<line>ALA CA 3.82 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLU CA 224</line>
<line>ARG CA 228</line>
<line>TYR CA 245</line>
<line>GLY CA 182</line>
<line>LEU CA 240</line>
<line>GLY CA 240</line>
<line>TYR CA 321</line>
<line>ASN CA 384</line>
<line>LEU CA 446</line>
<line>VAL CA 480</line>
<line>ALA CA 404</line>
<line>GLY CA 415</line>
</n14>
</entryChain>
<parallel>
<x>44.994998931884766</x>
<y>-45.242000579833984</y>
<z>80.38800048828125</z>
</parallel>
<rotation>
<x>0.7129999995231628</x>
<y>0.6980000138282776</y>
<z>-0.05900000035762787</z>
<x>0.2329999953508377</x>
<y>-0.3160000145435333</y>
<z>-0.9200000166893005</z>
<x>-0.6610000133514404</x>
<y>0.6420000195503235</y>
<z>-0.3880000114440918</z>
</rotation>
<rmsd>1.2792320251464844</rmsd>
<dmax>1.7998679876327515</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1HRD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HRDA</entryIDChain>
<sequence>RKIVG--GFYNG</sequence>
<secondary-structure>HHH -- GG</secondary-structure>
<atom-coordinate>
<line>ATOM 1419 CA ARG A 181 4.158 9.271 61.654 1.00 15.32 C </line>
<line>ATOM 1430 CA LYS A 182 7.455 10.814 62.397 1.00 11.92 C </line>
<line>ATOM 1439 CA ILE A 183 8.098 8.937 65.636 1.00 19.42 C </line>
<line>ATOM 1447 CA VAL A 184 6.887 5.545 64.450 1.00 8.20 C </line>
<line>ATOM 1454 CA GLY A 185 8.639 5.763 61.173 1.00 8.51 C </line>
<line>ATOM 1458 CA GLY A 186 5.779 4.395 59.087 1.00 15.25 C </line>
<line>ATOM 1462 CA PHE A 187 2.404 5.381 57.662 1.00 14.18 C </line>
<line>ATOM 1473 CA TYR A 188 -0.265 3.701 59.824 1.00 6.69 C </line>
<line>ATOM 1485 CA ASN A 189 -2.745 6.430 58.934 1.00 7.54 C </line>
<line>ATOM 1493 CA GLY A 190 -5.604 4.468 60.443 1.00 10.69 C </line>
</atom-coordinate>
<distance-map>
<line> GLY ASN TYR PHE GLY GLY VAL ILE LYS ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 10.95 7.94 7.34 5.84 5.74 5.71 5.40 5.61 3.72 </line>
<line>LYS CA 14.65 11.63 10.81 8.80 7.41 5.33 5.68 3.80 </line>
<line>ILE CA 15.32 12.99 11.45 10.42 8.30 5.50 3.79 </line>
<line>VAL CA 13.16 11.13 8.72 8.14 5.60 3.72 </line>
<line>GLY CA 14.32 11.62 9.24 7.17 3.80 </line>
<line>GLY CA 11.46 8.76 6.13 3.79 </line>
<line>PHE CA 8.53 5.41 3.82 </line>
<line>TYR CA 5.43 3.79 </line>
<line>ASN CA 3.78 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>ARG CA 286</line>
<line>LYS CA 227</line>
<line>ILE CA 231</line>
<line>VAL CA 230</line>
<line>GLY CA 161</line>
<line>GLY CA 190</line>
<line>PHE CA 259</line>
<line>TYR CA 328</line>
<line>ASN CA 384</line>
<line>GLY CA 428</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1EUZ</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1EUZE</entryIDChain>
<sequence>ETIMRRKGPAFG</sequence>
<secondary-structure>HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 14128 CA GLU E 161 44.037 -31.914 134.278 1.00 19.07 C </line>
<line>ATOM 14137 CA THR E 162 45.668 -30.849 131.030 1.00 22.61 C </line>
<line>ATOM 14144 CA ILE E 163 42.883 -28.459 130.002 1.00 18.80 C </line>
<line>ATOM 14152 CA MET E 164 42.447 -27.226 133.585 1.00 23.28 C </line>
<line>ATOM 14160 CA ARG E 165 46.169 -26.421 133.775 1.00 24.81 C </line>
<line>ATOM 14171 CA ARG E 166 46.487 -28.106 137.160 1.00 23.71 C </line>
<line>ATOM 14182 CA LYS E 167 44.803 -25.195 138.952 1.00 30.70 C </line>
<line>ATOM 14191 CA GLY E 168 42.574 -27.352 141.120 1.00 30.48 C </line>
<line>ATOM 14195 CA PRO E 169 41.986 -30.879 142.523 1.00 27.32 C </line>
<line>ATOM 14202 CA ALA E 170 41.675 -32.389 139.049 1.00 23.22 C </line>
<line>ATOM 14207 CA PHE E 171 41.871 -35.895 140.542 1.00 22.08 C </line>
<line>ATOM 14218 CA GLY E 172 38.418 -35.026 141.864 1.00 21.41 C </line>
</atom-coordinate>
<distance-map>
<line> GLY PHE ALA PRO GLY LYS ARG ARG MET ILE THR GLU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLU CA 9.94 7.73 5.34 8.56 8.35 8.22 5.37 5.91 5.00 5.62 3.79 </line>
<line>THR CA 13.69 11.42 9.09 12.07 11.12 9.77 6.77 5.23 5.48 3.81 </line>
<line>ILE CA 14.27 12.94 9.94 12.78 11.18 9.72 8.02 5.40 3.81 </line>
<line>MET CA 12.07 11.13 7.56 9.67 7.54 6.20 5.47 3.81 </line>
<line>ARG CA 14.13 12.41 9.14 10.67 8.23 5.49 3.79 </line>
<line>ARG CA 11.62 9.67 6.71 7.53 5.62 3.81 </line>
<line>LYS CA 12.08 11.21 7.85 7.28 3.78 </line>
<line>GLY CA 8.76 8.59 5.52 3.84 </line>
<line>PRO CA 5.51 5.39 3.80 </line>
<line>ALA CA 5.05 3.82 </line>
<line>PHE CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>GLU CA 320</line>
<line>THR CA 256</line>
<line>ILE CA 248</line>
<line>MET CA 254</line>
<line>ARG CA 178</line>
<line>ARG CA 196</line>
<line>LYS CA 173</line>
<line>GLY CA 255</line>
<line>PRO CA 326</line>
<line>ALA CA 399</line>
<line>PHE CA 437</line>
<line>GLY CA 473</line>
</n14>
</entryChain>
<parallel>
<x>-38.03499984741211</x>
<y>36.1619987487793</y>
<z>-74.18499755859375</z>
</parallel>
<rotation>
<x>0.5509999990463257</x>
<y>0.5410000085830688</y>
<z>-0.6349999904632568</z>
<x>0.7509999871253967</x>
<y>-0.652999997138977</y>
<z>0.0949999988079071</z>
<x>-0.3630000054836273</x>
<y>-0.5289999842643738</y>
<z>-0.7670000195503235</z>
</rotation>
<rmsd>1.872156023979187</rmsd>
<dmax>2.889146089553833</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1HRD</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1HRDA</entryIDChain>
<sequence>KKLAE-LGAKA</sequence>
<secondary-structure>HHHHH- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 1904 CA LYS A 247 -30.802 17.785 51.758 1.00 18.47 C </line>
<line>ATOM 1913 CA LYS A 248 -31.451 14.043 52.214 1.00 28.73 C </line>
<line>ATOM 1922 CA LEU A 249 -35.066 14.680 53.140 1.00 27.73 C </line>
<line>ATOM 1930 CA ALA A 250 -35.568 16.589 49.942 1.00 26.69 C </line>
<line>ATOM 1935 CA GLU A 251 -33.911 13.798 47.992 1.00 27.19 C </line>
<line>ATOM 1944 CA LEU A 252 -36.205 11.135 49.445 1.00 30.86 C </line>
<line>ATOM 1952 CA GLY A 253 -39.324 13.127 48.740 1.00 27.42 C </line>
<line>ATOM 1956 CA ALA A 254 -40.040 14.743 52.096 1.00 19.42 C </line>
<line>ATOM 1961 CA LYS A 255 -39.651 18.323 53.161 1.00 13.04 C </line>
<line>ATOM 1970 CA ALA A 256 -38.255 20.461 55.884 1.00 23.40 C </line>
</atom-coordinate>
<distance-map>
<line> ALA LYS ALA GLY LEU GLU ALA LEU LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 8.93 8.98 9.73 10.17 8.87 6.30 5.24 5.45 3.83 </line>
<line>LYS CA 10.05 9.30 8.62 8.65 6.22 4.89 5.35 3.79 </line>
<line>LEU CA 7.15 5.86 5.08 6.32 5.25 5.35 3.76 </line>
<line>ALA CA 7.58 5.48 5.30 5.25 5.51 3.79 </line>
<line>GLU CA 11.20 8.95 7.44 5.51 3.80 </line>
<line>LEU CA 11.52 8.79 5.90 3.77 </line>
<line>GLY CA 10.29 6.83 3.79 </line>
<line>ALA CA 7.09 3.76 </line>
<line>LYS CA 3.73 </line>
<line>ALA CA </line>
</distance-map>
<n14>
<line>LYS CA 408</line>
<line>LYS CA 420</line>
<line>LEU CA 438</line>
<line>ALA CA 361</line>
<line>GLU CA 294</line>
<line>LEU CA 282</line>
<line>GLY CA 260</line>
<line>ALA CA 350</line>
<line>LYS CA 394</line>
<line>ALA CA 496</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1EUZ</pdbID>
<pdbChain>E</pdbChain>
<entryIDChain>1EUZE</entryIDChain>
<sequence>KLAKEQLGMTV</sequence>
<secondary-structure>HHHH EE</secondary-structure>
<atom-coordinate>
<line>ATOM 14616 CA LYS E 229 31.737 -64.230 147.998 1.00 22.95 C </line>
<line>ATOM 14625 CA LEU E 230 31.051 -61.681 150.688 1.00 26.29 C </line>
<line>ATOM 14633 CA ALA E 231 27.756 -63.320 151.801 1.00 26.35 C </line>
<line>ATOM 14638 CA LYS E 232 29.707 -66.509 152.347 1.00 27.19 C </line>
<line>ATOM 14647 CA GLU E 233 32.874 -65.035 153.855 1.00 35.15 C </line>
<line>ATOM 14656 CA GLN E 234 31.288 -62.171 155.794 1.00 32.30 C </line>
<line>ATOM 14665 CA LEU E 235 27.641 -63.100 156.555 1.00 30.44 C </line>
<line>ATOM 14673 CA GLY E 236 28.542 -66.757 156.891 1.00 29.14 C </line>
<line>ATOM 14677 CA MET E 237 25.854 -67.872 154.493 1.00 27.27 C </line>
<line>ATOM 14685 CA THR E 238 25.770 -70.884 152.190 1.00 21.56 C </line>
<line>ATOM 14692 CA VAL E 239 25.705 -69.944 148.545 1.00 25.46 C </line>
</atom-coordinate>
<distance-map>
<line> VAL THR MET GLY LEU GLN GLU LYS ALA LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 8.33 9.87 9.49 9.78 9.55 8.08 6.02 5.31 5.58 3.77 </line>
<line>LEU CA 10.07 10.72 8.93 8.40 6.93 5.13 4.96 5.28 3.84 </line>
<line>ALA CA 7.66 7.83 5.62 6.19 4.76 5.45 5.78 3.78 </line>
<line>LYS CA 6.50 5.89 4.62 4.70 5.80 5.76 3.80 </line>
<line>GLU CA 10.18 9.35 7.60 5.56 6.20 3.80 </line>
<line>GLN CA 12.01 10.92 7.98 5.46 3.84 </line>
<line>LEU CA 10.71 9.12 5.50 3.78 </line>
<line>GLY CA 9.37 6.84 3.77 </line>
<line>MET CA 6.30 3.79 </line>
<line>THR CA 3.76 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>LYS CA 405</line>
<line>LEU CA 412</line>
<line>ALA CA 456</line>
<line>LYS CA 375</line>
<line>GLU CA 288</line>
<line>GLN CA 305</line>
<line>LEU CA 335</line>
<line>GLY CA 280</line>
<line>MET CA 350</line>
<line>THR CA 363</line>
<line>VAL CA 456</line>
</n14>
</entryChain>
<parallel>
<x>-64.69100189208984</x>
<y>79.3010025024414</y>
<z>-102.41300201416016</z>
</parallel>
<rotation>
<x>0.625</x>
<y>0.17000000178813934</y>
<z>-0.7620000243186951</z>
<x>0.6100000143051147</x>
<y>-0.7149999737739563</y>
<z>0.3409999907016754</z>
<x>-0.4869999885559082</x>
<y>-0.6779999732971191</y>
<z>-0.5509999990463257</z>
</rotation>
<rmsd>0.8236569762229919</rmsd>
<dmax>1.5744359493255615</dmax>
</indel>