NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1A4JB-3FCTD
confEVID 1A4JB-3FCTD
pdbIDA 1A4J
pdbIDB 3FCT
pdbChainA B
pdbChainB D
identity 0.746500015258789
indelSize 1
alignment <alignment>
<seq1>QVQLLESGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGKGLKWMGWINTYTGEPTYADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCVQAERLRRTFDYWGAGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKV----</seq1>
<seq2>QVQLLESGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGMIDPNSGGTKYNEKFKSKATLTVDKPSNTAYMQLSSLTSEDSAVYYCTRRD-----MDYWGAGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKIVPKS</seq2>
<ss_1> EEE EEEEEE EEEEEEE EEEEEEE EEEEEGGG EEEEEEE EEEEEEE GGG EEEEEEEE EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEEEEEE EEE EEEEEE EEEEE ----</ss_1>
<ss_2> EEE EEE EEEEEEEE GGG EEEEEEE EEEEEE EEEEEGGG EEEEEEE EEEEEEE GGG EEEEEEE ----- EEEE EEEEE EEEEEEEEEEEEE EEEEE EEE EEEEEEEEEEE HHHH EEEEEEE EEEEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>3FCT</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>3FCTD</entryIDChain>
<sequence>CTRRD-----MDYWG</sequence>
<secondary-structure>EEE ----- </secondary-structure>
<atom-coordinate>
<line>ATOM 5660 CA CYS D 96 3.026 -18.532 47.784 1.00 29.25 C </line>
<line>ATOM 5666 CA THR D 97 6.393 -17.024 46.825 1.00 29.08 C </line>
<line>ATOM 5673 CA ARG D 98 7.356 -14.213 44.476 1.00 29.55 C </line>
<line>ATOM 5684 CA ARG D 99 9.133 -15.259 41.246 1.00 31.13 C </line>
<line>ATOM 5695 CA ASP D 100 12.635 -15.165 42.783 1.00 27.84 C </line>
<line>ATOM 5703 CA MET D 101 11.523 -16.959 45.955 1.00 30.07 C </line>
<line>ATOM 5711 CA ASP D 102 13.082 -14.328 48.200 1.00 30.44 C </line>
<line>ATOM 5719 CA TYR D 103 9.711 -13.507 49.824 1.00 27.23 C </line>
<line>ATOM 5731 CA TRP D 104 7.405 -16.278 51.128 1.00 27.21 C </line>
<line>ATOM 5745 CA GLY D 105 3.990 -16.526 52.752 1.00 24.83 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TRP TYR ASP MET ASP ARG ARG THR CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 5.44 5.95 8.61 10.91 8.83 11.34 9.53 6.95 3.81 </line>
<line>THR CA 6.41 4.48 5.69 7.34 5.20 7.67 6.46 3.79 </line>
<line>ARG CA 9.23 6.97 5.89 6.83 5.20 5.62 3.83 </line>
<line>ARG CA 12.67 10.08 8.77 8.05 5.55 3.83 </line>
<line>ASP CA 13.27 9.91 7.80 5.50 3.81 </line>
<line>MET CA 10.16 6.65 5.49 3.79 </line>
<line>ASP CA 10.40 6.68 3.83 </line>
<line>TYR CA 7.10 3.83 </line>
<line>TRP CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 488</line>
<line>THR CA 433</line>
<line>ARG CA 393</line>
<line>ARG CA 328</line>
<line>ASP CA 234</line>
<line>MET CA 270</line>
<line>ASP CA 212</line>
<line>TYR CA 286</line>
<line>TRP CA 333</line>
<line>GLY CA 347</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1A4J</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1A4JB</entryIDChain>
<sequence>CVQAERLRRTFDYWG</sequence>
<secondary-structure>EEEE </secondary-structure>
<atom-coordinate>
<line>ATOM 5737 CA CYS B 96 -6.270 9.243 51.607 1.00 28.72 C </line>
<line>ATOM 5743 CA VAL B 97 -4.828 6.089 49.986 1.00 22.75 C </line>
<line>ATOM 5750 CA GLN B 98 -3.892 5.230 46.402 1.00 28.52 C </line>
<line>ATOM 5759 CA ALA B 99 -4.596 1.693 45.286 1.00 32.84 C </line>
<line>ATOM 5764 CA GLU B 100 -3.227 -0.163 42.275 1.00 44.34 C </line>
<line>ATOM 5773 CA ARG B 101 -5.769 -1.928 40.025 1.00 52.10 C </line>
<line>ATOM 5784 CA LEU B 102 -3.727 -5.049 39.312 1.00 49.06 C </line>
<line>ATOM 5792 CA ARG B 103 -2.510 -5.841 42.831 1.00 34.42 C </line>
<line>ATOM 5803 CA ARG B 104 -5.591 -4.234 44.428 1.00 38.36 C </line>
<line>ATOM 5814 CA THR B 105 -3.378 -2.869 47.201 1.00 34.27 C </line>
<line>ATOM 5821 CA PHE B 106 -3.498 0.286 49.314 1.00 31.63 C </line>
<line>ATOM 5832 CA ASP B 107 -0.023 1.230 48.091 1.00 34.06 C </line>
<line>ATOM 5840 CA TYR B 108 0.585 4.783 49.305 1.00 37.33 C </line>
<line>ATOM 5852 CA TRP B 109 -1.092 6.429 52.284 1.00 26.33 C </line>
<line>ATOM 5866 CA GLY B 110 -1.152 10.124 53.123 1.00 21.81 C </line>
</atom-coordinate>
<distance-map>
<line> GLY TRP TYR ASP PHE THR ARG ARG LEU ARG GLU ALA GLN VAL CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 5.41 5.93 8.50 10.75 9.65 13.21 15.28 17.85 19.02 16.10 13.59 9.99 6.99 3.83 </line>
<line>VAL CA 6.30 4.40 5.61 7.09 5.99 9.49 11.75 14.10 15.47 12.82 10.06 6.44 3.80 </line>
<line>GLN CA 8.75 6.62 5.35 5.82 5.75 8.15 9.82 11.71 12.49 9.77 6.82 3.78 </line>
<line>ALA CA 12.02 9.15 7.25 5.38 4.41 5.10 6.07 8.19 9.05 6.49 3.79 </line>
<line>GLU CA 15.09 12.17 9.40 6.78 7.06 5.62 5.18 5.75 5.74 3.83 </line>
<line>ARG CA 18.39 15.56 13.10 10.39 9.82 7.62 4.97 5.81 3.80 </line>
<line>LEU CA 20.68 17.52 14.67 11.41 11.34 8.19 5.51 3.81 </line>
<line>ARG CA 19.04 15.55 12.82 9.16 8.97 5.36 3.82 </line>
<line>ARG CA 17.36 13.99 11.97 8.62 6.98 3.80 </line>
<line>THR CA 14.45 10.84 8.87 5.37 3.80 </line>
<line>PHE CA 10.81 7.24 6.07 3.80 </line>
<line>ASP CA 10.28 6.76 3.80 </line>
<line>TYR CA 6.79 3.79 </line>
<line>TRP CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>CYS CA 498</line>
<line>VAL CA 449</line>
<line>GLN CA 424</line>
<line>ALA CA 345</line>
<line>GLU CA 257</line>
<line>ARG CA 215</line>
<line>LEU CA 129</line>
<line>ARG CA 133</line>
<line>ARG CA 184</line>
<line>THR CA 217</line>
<line>PHE CA 297</line>
<line>ASP CA 269</line>
<line>TYR CA 309</line>
<line>TRP CA 347</line>
<line>GLY CA 357</line>
</n14>
</entryChain>
<parallel>
<x>12.326000213623047</x>
<y>-19.172000885009766</y>
<z>-1.8969999551773071</z>
</parallel>
<rotation>
<x>0.40299999713897705</x>
<y>0.6830000281333923</y>
<z>0.609000027179718</z>
<x>-0.9110000133514404</x>
<y>0.3610000014305115</y>
<z>0.19900000095367432</z>
<x>-0.08399999886751175</x>
<y>-0.6349999904632568</y>
<z>0.7680000066757202</z>
</rotation>
<rmsd>1.3221620321273804</rmsd>
<dmax>2.542875051498413</dmax>
</indel>