NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1A4JH-1LMKA
confEVID 1A4JH-1LMKA
pdbIDA 1A4J
pdbIDB 1LMK
pdbChainA H
pdbChainB A
identity 0.271600008010864
indelSize 3
alignment <alignment>
<seq1>QVQLLESGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGKGLKWMGWINTYTGEPTYADDFKGRFAFSLETSASTAYLQINNLKNEDTATYFCVQA-ERL--RRTFDYWGAGTTVTVSSAST-KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE-----PVTVSWNSGALTSGVHTF---PAVLQSSG---------LYSLSSVVTVPS-SSLGTQTYICNVNHKPSN-----TKVDKKV-</seq1>
<seq2>-VQLQQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVYYCARGEDYYAYWYVLDYWGQGTTVTVSSGGGGSDIELTQSPLSLPVSL--GDQASISCRSSQSLVHSNGNTSLHWYLKKPGQSPKLLIYKVSTRFSGVPDRFSGSGSGTDFTLKISRVEAEDL----GVYFCSQSTHVPFTFGSGTKLELK</seq2>
<ss_1> EEE EEE EEEEEE GGG EEEEEEE EEEEEEEHHHHEEEEEGGG EEEEEEE EEEEEEE GGG EEEEEEEE- -- EEEE - EEEEE EEEEEEEEEEEEE ----- EEEEE --- EEE ---------EEEEEEE EEE- EEEEEE -----EEEEE -</ss_1>
<ss_2>- EEE EEE EEEEEEEEEEE EEEEEEEE EEEEEEEEE EEEEEHHHH EEEEEEE EEEEEEE GGG EEEEEEE EEEEE EEEEE -- EEEEEE EEEEEEEE EEEEE EEE EEEEEEEEEEEEEEE GGG ----EEEEEE EEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1A4J</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1A4JH</entryIDChain>
<sequence>GVHTF---PAVLQ</sequence>
<secondary-structure> --- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2946 CA GLY H 168 34.357 3.090 17.633 1.00 30.55 C </line>
<line>ATOM 2950 CA VAL H 169 31.962 5.588 16.002 1.00 30.31 C </line>
<line>ATOM 2957 CA HIS H 170 28.717 4.133 14.618 1.00 20.77 C </line>
<line>ATOM 2967 CA THR H 171 26.289 6.455 12.870 1.00 21.41 C </line>
<line>ATOM 2974 CA PHE H 172 23.115 4.540 12.071 1.00 17.19 C </line>
<line>ATOM 2985 CA PRO H 173 20.986 4.907 8.932 1.00 17.79 C </line>
<line>ATOM 2992 CA ALA H 174 18.032 7.257 9.523 1.00 23.46 C </line>
<line>ATOM 2997 CA VAL H 175 14.597 5.852 10.137 1.00 30.69 C </line>
<line>ATOM 3004 CA LEU H 176 11.374 7.354 8.858 1.00 24.04 C </line>
<line>ATOM 3012 CA GLN H 177 9.144 7.989 11.839 1.00 26.30 C </line>
</atom-coordinate>
<distance-map>
<line> GLN LEU VAL ALA PRO PHE THR HIS VAL GLY </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLY CA 26.33 24.97 21.31 18.70 16.06 12.63 9.95 6.48 3.83 </line>
<line>VAL CA 23.32 21.86 18.33 15.45 13.07 9.74 6.54 3.82 </line>
<line>HIS CA 20.14 18.56 14.91 12.24 9.63 6.17 3.79 </line>
<line>THR CA 17.24 15.47 12.02 8.95 6.78 3.79 </line>
<line>PHE CA 14.39 12.49 8.83 6.30 3.81 </line>
<line>PRO CA 12.58 9.92 6.57 3.82 </line>
<line>ALA CA 9.21 6.69 3.76 </line>
<line>VAL CA 6.10 3.78 </line>
<line>LEU CA 3.78 </line>
<line>GLN CA </line>
</distance-map>
<n14>
<line>GLY CA 216</line>
<line>VAL CA 270</line>
<line>HIS CA 246</line>
<line>THR CA 288</line>
<line>PHE CA 236</line>
<line>PRO CA 221</line>
<line>ALA CA 283</line>
<line>VAL CA 240</line>
<line>LEU CA 269</line>
<line>GLN CA 213</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LMK</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1LMKA</entryIDChain>
<sequence>SPKLLIYKVSTRF</sequence>
<secondary-structure> EEEEE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1341 CA SER A 248 21.456 -7.889 -9.926 1.00 13.91 C </line>
<line>ATOM 1347 CA PRO A 249 23.227 -5.437 -12.188 1.00 7.12 C </line>
<line>ATOM 1354 CA LYS A 250 26.726 -6.773 -13.191 1.00 3.86 C </line>
<line>ATOM 1363 CA LEU A 251 29.208 -3.845 -13.097 1.00 6.80 C </line>
<line>ATOM 1371 CA LEU A 252 31.432 -3.955 -16.193 1.00 11.87 C </line>
<line>ATOM 1379 CA ILE A 253 33.354 -0.626 -16.559 1.00 6.54 C </line>
<line>ATOM 1387 CA TYR A 254 33.855 2.234 -14.075 1.00 2.97 C </line>
<line>ATOM 1399 CA LYS A 255 34.919 5.857 -13.970 1.00 10.42 C </line>
<line>ATOM 1408 CA VAL A 256 34.663 5.566 -17.735 1.00 10.04 C </line>
<line>ATOM 1415 CA SER A 257 37.319 2.993 -18.624 1.00 9.17 C </line>
<line>ATOM 1421 CA THR A 258 38.648 0.543 -16.020 1.00 8.25 C </line>
<line>ATOM 1428 CA ARG A 259 37.273 -2.982 -16.318 1.00 11.41 C </line>
<line>ATOM 1439 CA PHE A 260 35.893 -4.419 -13.119 1.00 13.85 C </line>
</atom-coordinate>
<distance-map>
<line> PHE ARG THR SER VAL LYS TYR ILE LEU LEU LYS PRO SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 15.19 17.75 20.09 21.11 20.41 19.66 16.54 15.44 12.42 9.30 6.30 3.78 </line>
<line>PRO CA 12.74 14.85 16.98 17.64 16.81 16.35 13.24 12.03 9.25 6.26 3.88 </line>
<line>LYS CA 9.46 11.64 14.27 15.40 15.36 15.07 11.52 9.65 6.25 3.84 </line>
<line>LEU CA 6.71 8.73 10.81 11.96 11.83 11.29 7.71 6.29 3.81 </line>
<line>LEU CA 5.44 5.92 8.50 9.43 10.17 10.65 6.98 3.86 </line>
<line>ILE CA 5.72 4.58 5.45 5.75 6.44 7.15 3.82 </line>
<line>TYR CA 7.02 6.63 5.44 5.77 5.02 3.78 </line>
<line>LYS CA 10.36 9.44 6.81 5.97 3.78 </line>
<line>VAL CA 11.07 9.05 6.64 3.80 </line>
<line>SER CA 9.34 6.40 3.81 </line>
<line>THR CA 6.37 3.80 </line>
<line>ARG CA 3.77 </line>
<line>PHE CA </line>
</distance-map>
<n14>
<line>SER CA 161</line>
<line>PRO CA 272</line>
<line>LYS CA 314</line>
<line>LEU CA 364</line>
<line>LEU CA 397</line>
<line>ILE CA 388</line>
<line>TYR CA 365</line>
<line>LYS CA 347</line>
<line>VAL CA 377</line>
<line>SER CA 329</line>
<line>THR CA 262</line>
<line>ARG CA 267</line>
<line>PHE CA 238</line>
</n14>
</entryChain>
<parallel>
<x>-5.578000068664551</x>
<y>7.577000141143799</y>
<z>27.344999313354492</z>
</parallel>
<rotation>
<x>-0.9649999737739563</x>
<y>0.1509999930858612</y>
<z>0.2150000035762787</z>
<x>-0.10300000011920929</x>
<y>0.5350000262260437</y>
<z>-0.8389999866485596</z>
<x>0.24199999868869781</x>
<y>0.8309999704360962</y>
<z>0.5</z>
</rotation>
<rmsd>2.5564589500427246</rmsd>
<dmax>4.778535842895508</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1A4J</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1A4JH</entryIDChain>
<sequence>HKPSN-----TKVDK</sequence>
<secondary-structure>E -----EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3220 CA HIS H 206 21.719 19.403 8.271 1.00 30.86 C </line>
<line>ATOM 3230 CA LYS H 207 22.305 21.375 5.078 1.00 40.48 C </line>
<line>ATOM 3239 CA PRO H 208 18.709 21.433 3.816 1.00 27.74 C </line>
<line>ATOM 3246 CA SER H 209 17.828 23.605 6.825 1.00 29.82 C </line>
<line>ATOM 3252 CA ASN H 210 21.293 25.118 7.178 1.00 37.48 C </line>
<line>ATOM 3260 CA THR H 211 21.231 23.808 10.724 1.00 32.32 C </line>
<line>ATOM 3267 CA LYS H 212 24.500 23.079 12.514 1.00 35.94 C </line>
<line>ATOM 3276 CA VAL H 213 24.708 22.062 16.131 1.00 33.02 C </line>
<line>ATOM 3283 CA ASP H 214 27.496 20.955 18.392 1.00 37.08 C </line>
<line>ATOM 3291 CA LYS H 215 26.490 19.043 21.455 1.00 36.99 C </line>
</atom-coordinate>
<distance-map>
<line> LYS ASP VAL LYS THR ASN SER PRO LYS HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 14.03 11.76 8.82 6.26 5.07 5.83 5.91 5.75 3.80 </line>
<line>LYS CA 17.06 14.30 11.33 7.94 6.24 4.41 5.30 3.81 </line>
<line>PRO CA 19.43 17.03 13.71 10.58 7.73 5.62 3.81 </line>
<line>SER CA 17.60 15.31 11.68 8.78 5.18 3.80 </line>
<line>ASN CA 16.36 13.47 10.06 6.55 3.78 </line>
<line>THR CA 12.87 10.30 6.66 3.80 </line>
<line>LYS CA 10.01 6.93 3.76 </line>
<line>VAL CA 6.37 3.76 </line>
<line>ASP CA 3.75 </line>
<line>LYS CA </line>
</distance-map>
<n14>
<line>HIS CA 293</line>
<line>LYS CA 207</line>
<line>PRO CA 232</line>
<line>SER CA 217</line>
<line>ASN CA 184</line>
<line>THR CA 228</line>
<line>LYS CA 248</line>
<line>VAL CA 283</line>
<line>ASP CA 265</line>
<line>LYS CA 288</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1LMK</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1LMKA</entryIDChain>
<sequence>QSTHVPFTFGSGTKL</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1701 CA GLN A 295 26.660 8.505 -13.019 1.00 14.64 C </line>
<line>ATOM 1710 CA SER A 296 27.998 9.325 -9.442 1.00 15.14 C </line>
<line>ATOM 1716 CA THR A 297 29.457 12.705 -10.257 1.00 12.97 C </line>
<line>ATOM 1723 CA HIS A 298 26.308 14.707 -9.685 1.00 14.84 C </line>
<line>ATOM 1733 CA VAL A 299 23.831 14.018 -6.882 1.00 15.04 C </line>
<line>ATOM 1740 CA PRO A 300 21.454 12.108 -7.306 1.00 8.66 C </line>
<line>ATOM 1747 CA PHE A 301 23.150 9.180 -8.930 1.00 7.37 C </line>
<line>ATOM 1758 CA THR A 302 21.129 8.515 -12.041 1.00 9.40 C </line>
<line>ATOM 1765 CA PHE A 303 20.861 5.539 -14.420 1.00 8.61 C </line>
<line>ATOM 1776 CA GLY A 304 20.374 5.660 -18.140 1.00 8.38 C </line>
<line>ATOM 1780 CA SER A 305 17.211 4.226 -19.659 1.00 12.58 C </line>
<line>ATOM 1786 CA GLY A 306 18.801 1.059 -20.990 1.00 7.27 C </line>
<line>ATOM 1790 CA THR A 307 19.789 -0.665 -24.271 1.00 9.89 C </line>
<line>ATOM 1797 CA LYS A 308 18.656 -4.206 -24.994 1.00 16.04 C </line>
<line>ATOM 1806 CA LEU A 309 21.386 -6.312 -26.560 1.00 23.39 C </line>
</atom-coordinate>
<distance-map>
<line> LEU LYS THR GLY SER GLY PHE THR PHE PRO VAL HIS THR SER GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 20.75 19.21 16.06 13.44 12.32 8.59 6.66 5.62 5.43 8.53 8.72 7.05 5.75 3.91 </line>
<line>SER CA 24.11 22.63 19.67 16.92 15.71 12.13 9.49 7.39 4.88 7.43 6.78 5.65 3.77 </line>
<line>THR CA 26.32 24.90 21.65 19.09 17.61 13.94 11.94 9.49 7.35 8.55 6.69 3.78 </line>
<line>HIS CA 27.40 25.51 22.17 19.25 17.09 13.73 11.67 8.41 6.41 6.00 3.80 </line>
<line>VAL CA 28.40 26.21 23.12 19.81 17.41 14.44 11.73 8.01 5.30 3.08 </line>
<line>PRO CA 26.65 24.22 21.30 17.79 15.26 12.65 9.70 5.95 3.75 </line>
<line>PHE CA 23.54 21.39 18.54 15.18 13.23 10.24 6.97 3.77 </line>
<line>THR CA 20.75 18.32 15.35 11.88 9.58 6.78 3.82 </line>
<line>PHE CA 16.97 14.55 11.69 8.21 6.52 3.75 </line>
<line>GLY CA 14.67 12.14 8.83 5.64 3.79 </line>
<line>SER CA 13.27 10.08 7.20 3.79 </line>
<line>GLY CA 9.59 6.62 3.84 </line>
<line>THR CA 6.30 3.79 </line>
<line>LYS CA 3.79 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>GLN CA 399</line>
<line>SER CA 314</line>
<line>THR CA 300</line>
<line>HIS CA 272</line>
<line>VAL CA 209</line>
<line>PRO CA 199</line>
<line>PHE CA 262</line>
<line>THR CA 292</line>
<line>PHE CA 351</line>
<line>GLY CA 371</line>
<line>SER CA 290</line>
<line>GLY CA 338</line>
<line>THR CA 332</line>
<line>LYS CA 321</line>
<line>LEU CA 360</line>
</n14>
</entryChain>
<parallel>
<x>-2.2200000286102295</x>
<y>14.5</y>
<z>23.093000411987305</z>
</parallel>
<rotation>
<x>-0.12600000202655792</x>
<y>-0.902999997138977</y>
<z>-0.41100001335144043</z>
<x>-0.9480000138282776</x>
<y>0.23100000619888306</y>
<z>-0.21799999475479126</z>
<x>0.2919999957084656</x>
<y>0.3619999885559082</y>
<z>-0.8849999904632568</z>
</rotation>
<rmsd>5.290056228637695</rmsd>
<dmax>7.309298038482666</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1LMK</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1LMKA</entryIDChain>
<sequence>LPVSL--GDQAS</sequence>
<secondary-structure> -- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 1061 CA LEU A 211 20.531 -3.689 -30.377 1.00 8.26 C </line>
<line>ATOM 1069 CA PRO A 212 20.075 -6.962 -32.408 1.00 12.53 C </line>
<line>ATOM 1076 CA VAL A 213 23.281 -8.755 -33.258 1.00 16.51 C </line>
<line>ATOM 1083 CA SER A 214 24.766 -12.150 -34.029 1.00 20.11 C </line>
<line>ATOM 1089 CA LEU A 215 26.927 -13.841 -31.398 1.00 22.58 C </line>
<line>ATOM 1097 CA GLY A 216 30.388 -12.915 -32.514 1.00 17.96 C </line>
<line>ATOM 1101 CA ASP A 217 29.565 -9.431 -33.782 1.00 16.31 C </line>
<line>ATOM 1109 CA GLN A 218 30.925 -6.394 -32.049 1.00 16.23 C </line>
<line>ATOM 1118 CA ALA A 219 28.461 -3.900 -30.615 1.00 14.30 C </line>
<line>ATOM 1123 CA SER A 220 28.953 -0.509 -29.123 1.00 10.72 C </line>
</atom-coordinate>
<distance-map>
<line> SER ALA GLN ASP GLY LEU SER VAL PRO LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 9.09 7.94 10.87 11.23 13.67 12.04 10.14 6.44 3.88 </line>
<line>PRO CA 11.46 9.11 10.87 9.90 11.91 9.76 7.18 3.77 </line>
<line>VAL CA 10.83 7.58 8.09 6.34 8.27 6.53 3.78 </line>
<line>SER CA 13.31 9.66 8.66 5.52 5.87 3.80 </line>
<line>LEU CA 13.68 10.09 8.48 5.66 3.75 </line>
<line>GLY CA 12.94 9.41 6.56 3.80 </line>
<line>ASP CA 10.08 6.47 3.75 </line>
<line>GLN CA 6.86 3.79 </line>
<line>ALA CA 3.74 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>LEU CA 285</line>
<line>PRO CA 224</line>
<line>VAL CA 236</line>
<line>SER CA 195</line>
<line>LEU CA 204</line>
<line>GLY CA 205</line>
<line>ASP CA 221</line>
<line>GLN CA 263</line>
<line>ALA CA 333</line>
<line>SER CA 358</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1A4J</pdbID>
<pdbChain>H</pdbChain>
<entryIDChain>1A4JH</entryIDChain>
<sequence>SKSTSGGTAALG</sequence>
<secondary-structure> EEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2706 CA SER H 134 26.920 7.487 35.181 1.00 93.22 C </line>
<line>ATOM 2712 CA LYS H 135 25.959 4.964 37.868 1.00 97.50 C </line>
<line>ATOM 2721 CA SER H 136 28.671 2.884 36.183 1.00 99.21 C </line>
<line>ATOM 2727 CA THR H 137 31.509 5.325 35.412 1.00 98.73 C </line>
<line>ATOM 2734 CA SER H 138 34.679 3.211 35.652 1.00 96.86 C </line>
<line>ATOM 2740 CA GLY H 139 33.863 -0.083 33.961 1.00 87.23 C </line>
<line>ATOM 2744 CA GLY H 140 36.170 -0.404 30.976 1.00 65.01 C </line>
<line>ATOM 2748 CA THR H 141 34.377 0.945 27.915 1.00 45.98 C </line>
<line>ATOM 2755 CA ALA H 142 31.835 3.747 28.093 1.00 48.36 C </line>
<line>ATOM 2760 CA ALA H 143 28.683 4.217 25.987 1.00 47.14 C </line>
<line>ATOM 2765 CA LEU H 144 28.260 7.824 24.732 1.00 29.50 C </line>
<line>ATOM 2773 CA GLY H 145 26.240 9.212 21.830 1.00 20.79 C </line>
</atom-coordinate>
<distance-map>
<line> GLY LEU ALA ALA THR GLY GLY SER THR SER LYS SER </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>SER CA 13.48 10.54 9.92 9.40 12.30 12.87 10.34 8.87 5.08 5.03 3.81 </line>
<line>LYS CA 16.59 13.64 12.21 11.47 13.64 13.44 10.16 9.17 6.08 3.81 </line>
<line>SER CA 15.87 12.48 10.28 8.73 10.23 9.70 6.38 6.04 3.82 </line>
<line>THR CA 15.08 11.44 9.90 7.49 9.14 8.62 6.07 3.82 </line>
<line>SER CA 17.27 13.48 11.42 8.09 8.07 6.10 3.79 </line>
<line>GLY CA 17.08 13.38 10.44 7.29 6.15 3.79 </line>
<line>GLY CA 16.57 13.01 10.11 6.66 3.80 </line>
<line>THR CA 13.10 9.74 6.84 3.79 </line>
<line>ALA CA 10.02 6.38 3.82 </line>
<line>ALA CA 6.94 3.84 </line>
<line>LEU CA 3.80 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>SER CA 153</line>
<line>LYS CA 93</line>
<line>SER CA 123</line>
<line>THR CA 157</line>
<line>SER CA 141</line>
<line>GLY CA 131</line>
<line>GLY CA 131</line>
<line>THR CA 183</line>
<line>ALA CA 243</line>
<line>ALA CA 279</line>
<line>LEU CA 356</line>
<line>GLY CA 366</line>
</n14>
</entryChain>
<parallel>
<x>-4.521999835968018</x>
<y>-13.364999771118164</y>
<z>-65.26300048828125</z>
</parallel>
<rotation>
<x>0.2919999957084656</x>
<y>-0.8939999938011169</y>
<z>0.3409999907016754</z>
<x>-0.14399999380111694</x>
<y>0.3109999895095825</y>
<z>0.9390000104904175</z>
<x>-0.9459999799728394</x>
<y>-0.3230000138282776</y>
<z>-0.03799999877810478</z>
</rotation>
<rmsd>2.2601969242095947</rmsd>
<dmax>3.5389199256896973</dmax>
</indel>