NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1F3MC-1WBSA
confEVID 1F3MC-1WBSA
pdbIDA 1F3M
pdbIDB 1WBS
pdbChainA C
pdbChainB A
identity 0.184400007128716
indelSize 3
alignment <alignment>
<seq1>SDEEILEKLRSIVSVGD----------PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQP--KKELIINEILVMRENKNPNIVNYLDSYLVG------DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLT-DFGFCAQITTMVGTP---YWMAPEVVTR-KAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIA-TNGTPELQNPEK---------------------------LSAIFRDFLNRCLDMDVEKRGSAKELLQHQFL-------------------KI-AKPLSSLTPLIAAAKEATK------</seq1>
<seq2>-----------ERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMG-ADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPPLDQ</seq2>
<ss_1> HHHHHHHHHH ---------- EEE EEE EEEEEEEE EEEEEEE -- HHHHHHHHHHH EEEEE ------ EEEEEE EEEHHHHHH HHHHHHHHHHHHHHHHHHHH GGEEEEE EEEE - --- HHHH - HHHHHHHHHHHHHH HHHHHHHHH- --------------------------- HHHHHHHHHH HHHH HHHGGG GGG-------------------GG- HHHHHHHHH ------</ss_1>
<ss_2>----------- EEEEEEE EEEEE EEE EEEEEEEEE EEEEEEE HHHHHHHHHHHHHHHH EEE EEEEE - HHHHHHH HHHHHHHHHHHHHHHHHHH EEEEE EEEE HHHH HHHH GGHHHHHHHHHHHHHHH HHHHHHHHHHHH HHHHH HHHHHHGGG HHHHHHHHHH HHHGGG GGGHHHH GGGG HHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1F3M</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1F3MC</entryIDChain>
<sequence>LQQQP--KKELI</sequence>
<secondary-structure> -- HHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 977 CA LEU C 303 -15.589 24.808 47.685 1.00 95.10 C </line>
<line>ATOM 985 CA GLN C 304 -13.363 27.568 49.100 1.00 98.64 C </line>
<line>ATOM 994 CA GLN C 305 -11.384 24.869 50.897 1.00 99.59 C </line>
<line>ATOM 1003 CA GLN C 306 -10.329 23.021 47.744 1.00 98.67 C </line>
<line>ATOM 1012 CA PRO C 307 -6.714 23.643 46.555 1.00 97.42 C </line>
<line>ATOM 1019 CA LYS C 308 -6.318 23.956 42.779 1.00 96.11 C </line>
<line>ATOM 1028 CA LYS C 309 -9.611 25.369 41.508 1.00 94.93 C </line>
<line>ATOM 1037 CA GLU C 310 -8.420 26.705 38.146 1.00 92.08 C </line>
<line>ATOM 1046 CA LEU C 311 -7.413 23.148 37.277 1.00 87.39 C </line>
<line>ATOM 1054 CA ILE C 312 -10.783 21.546 37.995 1.00 82.73 C </line>
</atom-coordinate>
<distance-map>
<line> ILE LEU GLU LYS LYS PRO GLN GLN GLN LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 11.30 13.34 12.08 8.61 10.52 9.02 5.56 5.29 3.82 </line>
<line>GLN CA 12.89 13.95 12.05 8.75 10.13 8.13 5.63 3.80 </line>
<line>GLN CA 13.34 14.29 13.22 9.57 9.61 6.49 3.80 </line>
<line>GLN CA 9.87 10.87 10.46 6.70 6.45 3.86 </line>
<line>PRO CA 9.71 9.32 9.11 6.07 3.81 </line>
<line>LYS CA 6.97 5.67 5.78 3.80 </line>
<line>LYS CA 5.32 5.26 3.81 </line>
<line>GLU CA 5.68 3.80 </line>
<line>LEU CA 3.80 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>LEU CA 301</line>
<line>GLN CA 233</line>
<line>GLN CA 187</line>
<line>GLN CA 245</line>
<line>PRO CA 200</line>
<line>LYS CA 224</line>
<line>LYS CA 304</line>
<line>GLU CA 249</line>
<line>LEU CA 266</line>
<line>ILE CA 370</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1WBS</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1WBSA</entryIDChain>
<sequence>RPFQSIIHAKRT</sequence>
<secondary-structure> HHHHHHH</secondary-structure>
<atom-coordinate>
<line>ATOM 422 CA ARG A 57 12.266 22.632 22.950 1.00 37.51 C </line>
<line>ATOM 433 CA PRO A 58 13.816 21.694 26.333 1.00 34.00 C </line>
<line>ATOM 440 CA PHE A 59 16.734 24.159 25.934 1.00 34.79 C </line>
<line>ATOM 451 CA GLN A 60 14.984 27.019 24.072 1.00 40.22 C </line>
<line>ATOM 460 CA SER A 61 15.660 29.455 26.945 1.00 36.51 C </line>
<line>ATOM 466 CA ILE A 62 17.444 29.619 30.323 1.00 35.83 C </line>
<line>ATOM 474 CA ILE A 63 14.082 29.205 32.065 1.00 35.22 C </line>
<line>ATOM 482 CA HIS A 64 13.202 26.120 29.971 1.00 31.91 C </line>
<line>ATOM 492 CA ALA A 65 16.726 24.693 30.221 1.00 26.55 C </line>
<line>ATOM 497 CA LYS A 66 16.524 24.978 34.035 1.00 25.43 C </line>
<line>ATOM 506 CA ARG A 67 13.044 23.396 34.142 1.00 25.15 C </line>
<line>ATOM 517 CA THR A 68 14.300 20.459 32.069 1.00 22.42 C </line>
</atom-coordinate>
<distance-map>
<line> THR ARG LYS ALA HIS ILE ILE SER GLN PHE PRO ARG </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ARG CA 9.59 11.24 12.10 8.78 7.90 11.38 11.40 8.60 5.28 5.59 3.84 </line>
<line>PRO CA 5.89 8.03 8.80 5.71 5.76 9.45 9.59 8.00 5.90 3.84 </line>
<line>PHE CA 7.57 9.03 8.15 4.32 5.71 8.37 7.04 5.50 3.84 </line>
<line>GLN CA 10.37 10.88 10.29 6.80 6.23 8.34 7.20 3.83 </line>
<line>SER CA 10.44 9.76 8.43 5.88 5.13 5.36 3.82 </line>
<line>ILE CA 9.84 8.52 6.01 4.98 5.51 3.81 </line>
<line>ILE CA 8.75 6.26 5.26 5.55 3.83 </line>
<line>HIS CA 6.14 4.98 5.37 3.81 </line>
<line>ALA CA 5.22 5.53 3.83 </line>
<line>LYS CA 5.41 3.82 </line>
<line>ARG CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>ARG CA 330</line>
<line>PRO CA 407</line>
<line>PHE CA 350</line>
<line>GLN CA 252</line>
<line>SER CA 247</line>
<line>ILE CA 271</line>
<line>ILE CA 289</line>
<line>HIS CA 349</line>
<line>ALA CA 388</line>
<line>LYS CA 380</line>
<line>ARG CA 429</line>
<line>THR CA 477</line>
</n14>
</entryChain>
<parallel>
<x>-25.204999923706055</x>
<y>-0.10100000351667404</y>
<z>17.993999481201172</z>
</parallel>
<rotation>
<x>0.628000020980835</x>
<y>0.7279999852180481</y>
<z>0.2750000059604645</z>
<x>0.7409999966621399</x>
<y>-0.6669999957084656</y>
<z>0.07400000095367432</z>
<x>0.2370000034570694</x>
<y>0.15700000524520874</y>
<z>-0.9589999914169312</z>
</rotation>
<rmsd>2.6782779693603516</rmsd>
<dmax>3.990020990371704</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1F3M</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1F3MC</entryIDChain>
<sequence>LYLIA-TNGTP</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 2258 CA LEU C 473 11.790 -0.310 38.509 1.00 26.59 C </line>
<line>ATOM 2266 CA TYR C 474 15.330 -1.174 37.468 1.00 29.02 C </line>
<line>ATOM 2278 CA LEU C 475 13.982 -4.168 35.555 1.00 29.29 C </line>
<line>ATOM 2286 CA ILE C 476 11.422 -2.052 33.712 1.00 28.74 C </line>
<line>ATOM 2294 CA ALA C 477 14.182 0.406 32.805 1.00 30.65 C </line>
<line>ATOM 2299 CA THR C 478 16.531 -2.237 31.394 1.00 29.73 C </line>
<line>ATOM 2306 CA ASN C 479 14.620 -5.432 30.521 1.00 32.27 C </line>
<line>ATOM 2314 CA GLY C 480 11.510 -3.498 29.599 1.00 31.95 C </line>
<line>ATOM 2318 CA THR C 481 9.066 -6.363 29.526 1.00 31.74 C </line>
<line>ATOM 2325 CA PRO C 482 8.295 -8.524 32.574 1.00 32.77 C </line>
</atom-coordinate>
<distance-map>
<line> PRO THR GLY ASN THR ALA ILE LEU TYR LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 10.72 11.17 9.47 9.90 8.76 6.23 5.12 5.33 3.79 </line>
<line>TYR CA 11.29 11.37 9.05 8.18 6.28 5.06 5.49 3.80 </line>
<line>LEU CA 7.76 8.08 6.48 5.23 5.25 5.34 3.80 </line>
<line>ILE CA 7.28 6.45 4.36 5.64 5.61 3.81 </line>
<line>ALA CA 10.70 9.10 5.71 6.28 3.81 </line>
<line>THR CA 10.43 8.73 5.48 3.82 </line>
<line>ASN CA 7.33 5.72 3.78 </line>
<line>GLY CA 6.67 3.77 </line>
<line>THR CA 3.82 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>LEU CA 290</line>
<line>TYR CA 247</line>
<line>LEU CA 274</line>
<line>ILE CA 354</line>
<line>ALA CA 296</line>
<line>THR CA 224</line>
<line>ASN CA 249</line>
<line>GLY CA 355</line>
<line>THR CA 400</line>
<line>PRO CA 404</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1WBS</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1WBSA</entryIDChain>
<sequence>LKLILRLVGTP</sequence>
<secondary-structure>HHHHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1861 CA LEU A 232 -12.129 32.110 48.343 1.00 20.24 C </line>
<line>ATOM 1869 CA LYS A 233 -15.706 32.787 49.520 1.00 19.84 C </line>
<line>ATOM 1878 CA LEU A 234 -16.528 29.048 49.277 1.00 18.84 C </line>
<line>ATOM 1886 CA ILE A 235 -13.414 28.256 51.355 1.00 18.79 C </line>
<line>ATOM 1894 CA LEU A 236 -14.038 30.925 54.010 1.00 20.33 C </line>
<line>ATOM 1902 CA ARG A 237 -17.672 29.858 54.325 1.00 22.20 C </line>
<line>ATOM 1913 CA LEU A 238 -16.499 26.377 55.415 1.00 21.39 C </line>
<line>ATOM 1921 CA VAL A 239 -13.336 27.050 57.378 1.00 21.63 C </line>
<line>ATOM 1928 CA GLY A 240 -14.170 30.529 58.732 1.00 21.53 C </line>
<line>ATOM 1932 CA THR A 241 -12.669 33.962 57.995 1.00 22.32 C </line>
<line>ATOM 1939 CA PRO A 242 -9.116 34.451 59.364 1.00 24.34 C </line>
</atom-coordinate>
<distance-map>
<line> PRO THR GLY VAL LEU ARG LEU ILE LEU LYS LEU </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LEU CA 11.66 9.84 10.70 10.43 10.10 8.46 6.10 5.06 5.44 3.83 </line>
<line>LYS CA 11.96 9.08 9.61 10.01 8.74 5.96 5.14 5.40 3.84 </line>
<line>LEU CA 13.63 10.73 9.86 8.93 6.69 5.24 5.67 3.83 </line>
<line>ILE CA 11.00 8.79 7.76 6.14 5.43 5.43 3.82 </line>
<line>LEU CA 8.08 5.19 4.74 5.18 5.36 3.80 </line>
<line>ARG CA 10.94 7.44 5.67 6.00 3.83 </line>
<line>LEU CA 11.63 8.88 5.80 3.78 </line>
<line>VAL CA 8.75 6.97 3.83 </line>
<line>GLY CA 6.43 3.82 </line>
<line>THR CA 3.84 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>LEU CA 424</line>
<line>LYS CA 349</line>
<line>LEU CA 384</line>
<line>ILE CA 464</line>
<line>LEU CA 398</line>
<line>ARG CA 307</line>
<line>LEU CA 350</line>
<line>VAL CA 395</line>
<line>GLY CA 325</line>
<line>THR CA 330</line>
<line>PRO CA 356</line>
</n14>
</entryChain>
<parallel>
<x>28.148000717163086</x>
<y>-31.94300079345703</y>
<z>-19.308000564575195</z>
</parallel>
<rotation>
<x>-0.9890000224113464</x>
<y>-0.14800000190734863</y>
<z>0.006000000052154064</z>
<x>-0.1469999998807907</x>
<y>0.9860000014305115</y>
<z>0.0820000022649765</z>
<x>-0.017999999225139618</x>
<y>0.07999999821186066</y>
<z>-0.996999979019165</z>
</rotation>
<rmsd>2.4874188899993896</rmsd>
<dmax>3.340034008026123</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1WBS</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1WBSA</entryIDChain>
<sequence>THLMG-ADLNN</sequence>
<secondary-structure>E - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 838 CA THR A 106 7.427 5.802 33.101 1.00 21.60 C </line>
<line>ATOM 845 CA HIS A 107 4.729 3.152 33.693 1.00 22.76 C </line>
<line>ATOM 855 CA LEU A 108 1.574 3.856 31.680 1.00 24.44 C </line>
<line>ATOM 863 CA MET A 109 -1.287 5.204 33.799 1.00 28.10 C </line>
<line>ATOM 871 CA GLY A 110 -4.602 4.817 31.986 1.00 30.91 C </line>
<line>ATOM 875 CA ALA A 111 -6.915 5.458 34.977 1.00 26.96 C </line>
<line>ATOM 880 CA ASP A 112 -6.570 8.484 37.253 1.00 25.41 C </line>
<line>ATOM 888 CA LEU A 113 -8.460 9.371 40.464 1.00 25.96 C </line>
<line>ATOM 896 CA ASN A 114 -10.875 11.615 38.580 1.00 28.78 C </line>
<line>ATOM 904 CA ASN A 115 -12.312 8.697 36.611 1.00 31.47 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASN LEU ASP ALA GLY MET LEU HIS THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 20.26 19.97 17.87 14.84 14.47 12.12 8.76 6.33 3.83 </line>
<line>HIS CA 18.16 18.41 16.08 12.99 11.94 9.63 6.36 3.81 </line>
<line>LEU CA 15.51 16.21 14.43 10.90 9.25 6.26 3.81 </line>
<line>MET CA 11.90 12.49 10.64 7.11 5.76 3.80 </line>
<line>GLY CA 9.79 11.36 10.37 6.71 3.83 </line>
<line>ALA CA 6.50 8.16 6.91 3.80 </line>
<line>ASP CA 5.78 5.49 3.83 </line>
<line>LEU CA 5.49 3.80 </line>
<line>ASN CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>THR CA 471</line>
<line>HIS CA 407</line>
<line>LEU CA 378</line>
<line>MET CA 359</line>
<line>GLY CA 289</line>
<line>ALA CA 280</line>
<line>ASP CA 350</line>
<line>LEU CA 414</line>
<line>ASN CA 362</line>
<line>ASN CA 260</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1F3M</pdbID>
<pdbChain>C</pdbChain>
<entryIDChain>1F3MC</entryIDChain>
<sequence>MEYLAGGSLTD</sequence>
<secondary-structure>EEE EEEHH</secondary-structure>
<atom-coordinate>
<line>ATOM 1319 CA MET C 344 -20.265 12.317 36.391 1.00 59.64 C </line>
<line>ATOM 1327 CA GLU C 345 -21.556 9.181 34.672 1.00 57.67 C </line>
<line>ATOM 1336 CA TYR C 346 -21.852 6.187 36.980 1.00 55.15 C </line>
<line>ATOM 1348 CA LEU C 347 -21.405 2.575 35.939 1.00 53.59 C </line>
<line>ATOM 1356 CA ALA C 348 -22.572 -0.260 38.165 1.00 52.91 C </line>
<line>ATOM 1361 CA GLY C 349 -20.772 -3.585 38.113 1.00 52.81 C </line>
<line>ATOM 1365 CA GLY C 350 -17.167 -4.092 39.101 1.00 49.12 C </line>
<line>ATOM 1369 CA SER C 351 -13.645 -3.528 37.836 1.00 42.59 C </line>
<line>ATOM 1375 CA LEU C 352 -11.372 -5.448 35.527 1.00 36.64 C </line>
<line>ATOM 1383 CA THR C 353 -9.198 -6.051 38.606 1.00 37.78 C </line>
<line>ATOM 1390 CA ASP C 354 -11.762 -8.260 40.362 1.00 44.82 C </line>
</atom-coordinate>
<distance-map>
<line> ASP THR LEU SER GLY GLY ALA LEU TYR GLU MET </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 22.62 21.56 19.89 17.23 16.92 16.00 12.91 9.82 6.36 3.80 </line>
<line>GLU CA 20.80 20.01 17.85 15.30 14.66 13.24 10.12 6.73 3.79 </line>
<line>TYR CA 17.94 17.68 15.73 12.75 11.49 9.90 6.59 3.79 </line>
<line>LEU CA 15.16 15.18 12.85 10.05 8.51 6.56 3.79 </line>
<line>ALA CA 13.63 14.58 12.62 9.51 6.69 3.78 </line>
<line>GLY CA 10.40 11.84 9.93 7.13 3.77 </line>
<line>GLY CA 6.94 8.22 6.94 3.78 </line>
<line>SER CA 5.68 5.17 3.77 </line>
<line>LEU CA 5.61 3.82 </line>
<line>THR CA 3.81 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>MET CA 490</line>
<line>GLU CA 423</line>
<line>TYR CA 418</line>
<line>LEU CA 352</line>
<line>ALA CA 311</line>
<line>GLY CA 313</line>
<line>GLY CA 347</line>
<line>SER CA 421</line>
<line>LEU CA 497</line>
<line>THR CA 416</line>
<line>ASP CA 323</line>
</n14>
</entryChain>
<parallel>
<x>16.965999603271484</x>
<y>3.6519999504089355</y>
<z>-2.2070000171661377</z>
</parallel>
<rotation>
<x>-0.026000000536441803</x>
<y>0.7419999837875366</y>
<z>0.6700000166893005</z>
<x>0.9810000061988831</x>
<y>0.1459999978542328</y>
<z>-0.12399999797344208</z>
<x>-0.1899999976158142</x>
<y>0.6549999713897705</y>
<z>-0.7319999933242798</z>
</rotation>
<rmsd>1.5457700490951538</rmsd>
<dmax>2.4991090297698975</dmax>
</indel>