NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1F3MD-1WBSA
confEVID 1F3MD-1WBSA
pdbIDA 1F3M
pdbIDB 1WBS
pdbChainA D
pdbChainB A
identity 0.187299996614456
indelSize 3
alignment <alignment>
<seq1>SDEEILEKLRSIVSVGD----------PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMN--LQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG------DELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFG------FCAQITPGTPYWMAPEVVTR-KAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT-NGTPELQNPE---------------------------KLSAIFRDFLNRCLDMDVEKRGSAKELLQHQF-------------------LKI-AKPLSSLTPLIAAAKEATK------</seq1>
<seq2>-----------ERPTFYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMG-ADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKSLTYDEVISFVPPPLDQ</seq2>
<ss_1> HHHHHHHHH ---------- EEE EEE EEEEEEEE EEEEEEEE --GGG HHHHHHHGGG EEEEE ------ EEEEEE EEEEEHHHHHH HHHHHHHHHHHHHHHHHHH EEEEE EEEE ------ HHHH - HHHHHHHHHHHHHH HHHHHHH - --------------------------- HHHHHHHHHH HHHH HHHH -------------------GGG- GGGHHHHHHHHHH ------</ss_1>
<ss_2>----------- EEEEEEE EEEEE EEE EEEEEEEEE EEEEEEE HHHHHHHHHHHHHHHH EEE EEEEE - HHHHHHH HHHHHHHHHHHHHHHHHHH EEEEE EEEE HHHH HHHH GGHHHHHHHHHHHHHHH HHHHHHHHHHHH HHHHH HHHHHHGGG HHHHHHHHHH HHHGGG GGGHHHH GGGG HHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1F3M</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1F3MD</entryIDChain>
<sequence>IRQMN--LQQQP</sequence>
<secondary-structure>EEEE --GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 3734 CA ILE D 298 12.120 66.322 47.780 1.00 49.19 C </line>
<line>ATOM 3742 CA ARG D 299 13.429 63.263 45.923 1.00 56.23 C </line>
<line>ATOM 3753 CA GLN D 300 15.279 64.278 42.751 1.00 64.65 C </line>
<line>ATOM 3762 CA MET D 301 15.373 61.222 40.500 1.00 71.98 C </line>
<line>ATOM 3770 CA ASN D 302 17.981 60.359 37.887 1.00 77.45 C </line>
<line>ATOM 3778 CA LEU D 303 15.075 59.467 35.638 1.00 83.41 C </line>
<line>ATOM 3786 CA GLN D 304 16.237 57.823 32.432 1.00 88.44 C </line>
<line>ATOM 3795 CA GLN D 305 19.003 56.026 34.381 1.00 91.40 C </line>
<line>ATOM 3804 CA GLN D 306 16.670 54.523 36.998 1.00 91.56 C </line>
<line>ATOM 3813 CA PRO D 307 14.836 51.123 37.038 1.00 90.05 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLN GLN GLN LEU ASN MET GLN ARG ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 18.81 16.62 18.25 18.02 14.25 12.95 9.47 6.28 3.81 </line>
<line>ARG CA 15.11 12.91 14.72 14.82 11.09 9.68 6.11 3.81 </line>
<line>GLN CA 14.35 11.41 12.33 12.21 8.59 6.81 3.80 </line>
<line>MET CA 10.69 7.67 8.81 8.80 5.18 3.79 </line>
<line>ASN CA 9.79 6.05 5.67 6.26 3.78 </line>
<line>LEU CA 8.46 5.37 5.37 3.79 </line>
<line>GLN CA 8.25 5.65 3.83 </line>
<line>GLN CA 6.96 3.81 </line>
<line>GLN CA 3.86 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>ILE CA 485</line>
<line>ARG CA 465</line>
<line>GLN CA 412</line>
<line>MET CA 366</line>
<line>ASN CA 268</line>
<line>LEU CA 310</line>
<line>GLN CA 233</line>
<line>GLN CA 179</line>
<line>GLN CA 231</line>
<line>PRO CA 199</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1WBS</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1WBSA</entryIDChain>
<sequence>VKKLSRPFQSII</sequence>
<secondary-structure>EEE HH</secondary-structure>
<atom-coordinate>
<line>ATOM 383 CA VAL A 52 7.031 8.285 26.883 1.00 23.11 C </line>
<line>ATOM 390 CA LYS A 53 7.182 12.061 27.225 1.00 23.35 C </line>
<line>ATOM 399 CA LYS A 54 9.165 14.003 24.643 1.00 24.80 C </line>
<line>ATOM 408 CA LEU A 55 10.034 17.462 25.979 1.00 27.88 C </line>
<line>ATOM 416 CA SER A 56 9.263 20.381 23.631 1.00 33.92 C </line>
<line>ATOM 422 CA ARG A 57 12.266 22.632 22.950 1.00 37.51 C </line>
<line>ATOM 433 CA PRO A 58 13.816 21.694 26.333 1.00 34.00 C </line>
<line>ATOM 440 CA PHE A 59 16.734 24.159 25.934 1.00 34.79 C </line>
<line>ATOM 451 CA GLN A 60 14.984 27.019 24.072 1.00 40.22 C </line>
<line>ATOM 460 CA SER A 61 15.660 29.455 26.945 1.00 36.51 C </line>
<line>ATOM 466 CA ILE A 62 17.444 29.619 30.323 1.00 35.83 C </line>
<line>ATOM 474 CA ILE A 63 14.082 29.205 32.065 1.00 35.22 C </line>
</atom-coordinate>
<distance-map>
<line> ILE ILE SER GLN PHE PRO ARG SER LEU LYS LYS VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 22.68 23.99 22.86 20.55 18.63 15.04 15.77 12.72 9.70 6.50 3.79 </line>
<line>LYS CA 19.10 20.57 19.35 17.16 15.47 11.73 12.48 9.30 6.23 3.79 </line>
<line>LYS CA 17.62 18.57 16.92 14.27 12.73 9.15 9.32 6.46 3.81 </line>
<line>LEU CA 13.83 14.89 13.28 10.93 9.47 5.69 6.39 3.82 </line>
<line>SER CA 13.12 14.04 11.59 8.77 8.68 5.45 3.81 </line>
<line>ARG CA 11.38 11.40 8.60 5.28 5.59 3.84 </line>
<line>PRO CA 9.45 9.59 8.00 5.90 3.84 </line>
<line>PHE CA 8.37 7.04 5.50 3.84 </line>
<line>GLN CA 8.34 7.20 3.83 </line>
<line>SER CA 5.36 3.82 </line>
<line>ILE CA 3.81 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>VAL CA 493</line>
<line>LYS CA 484</line>
<line>LYS CA 486</line>
<line>LEU CA 444</line>
<line>SER CA 355</line>
<line>ARG CA 330</line>
<line>PRO CA 407</line>
<line>PHE CA 350</line>
<line>GLN CA 252</line>
<line>SER CA 247</line>
<line>ILE CA 271</line>
<line>ILE CA 289</line>
</n14>
</entryChain>
<parallel>
<x>4.306000232696533</x>
<y>41.992000579833984</y>
<z>13.996999740600586</z>
</parallel>
<rotation>
<x>-0.722000002861023</x>
<y>-0.09399999678134918</y>
<z>-0.6859999895095825</z>
<x>0.6029999852180481</x>
<y>-0.5720000267028809</y>
<z>-0.5559999942779541</z>
<x>-0.3400000035762787</x>
<y>-0.8149999976158142</y>
<z>0.4699999988079071</z>
</rotation>
<rmsd>2.3071630001068115</rmsd>
<dmax>3.7930729389190674</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1F3M</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1F3MD</entryIDChain>
<sequence>YLIAT-NGTPE</sequence>
<secondary-structure>HHHH - </secondary-structure>
<atom-coordinate>
<line>ATOM 5052 CA TYR D 474 11.077 29.103 63.340 1.00 41.66 C </line>
<line>ATOM 5064 CA LEU D 475 9.631 30.450 66.601 1.00 39.00 C </line>
<line>ATOM 5072 CA ILE D 476 7.483 32.962 64.719 1.00 37.61 C </line>
<line>ATOM 5080 CA ALA D 477 6.186 30.201 62.450 1.00 36.76 C </line>
<line>ATOM 5085 CA THR D 478 5.247 27.901 65.355 1.00 38.02 C </line>
<line>ATOM 5092 CA ASN D 479 4.983 29.730 68.713 1.00 44.49 C </line>
<line>ATOM 5100 CA GLY D 480 3.717 32.947 67.170 1.00 47.19 C </line>
<line>ATOM 5104 CA THR D 481 3.861 35.643 69.832 1.00 51.15 C </line>
<line>ATOM 5111 CA PRO D 482 7.231 36.206 71.573 1.00 53.10 C </line>
<line>ATOM 5118 CA GLU D 483 7.799 35.845 75.310 1.00 57.98 C </line>
</atom-coordinate>
<distance-map>
<line> GLU PRO THR GLY ASN THR ALA ILE LEU TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 14.12 11.53 11.70 9.14 8.15 6.28 5.09 5.45 3.81 </line>
<line>LEU CA 10.41 7.98 8.41 6.44 5.16 5.22 5.40 3.80 </line>
<line>ILE CA 10.98 7.59 6.82 4.49 5.71 5.57 3.80 </line>
<line>ALA CA 14.14 10.97 9.46 5.99 6.39 3.82 </line>
<line>THR CA 12.99 10.56 9.05 5.58 3.83 </line>
<line>ASN CA 9.43 7.43 6.12 3.79 </line>
<line>GLY CA 9.56 6.51 3.79 </line>
<line>THR CA 6.75 3.83 </line>
<line>PRO CA 3.80 </line>
<line>GLU CA </line>
</distance-map>
<n14>
<line>TYR CA 248</line>
<line>LEU CA 274</line>
<line>ILE CA 353</line>
<line>ALA CA 299</line>
<line>THR CA 231</line>
<line>ASN CA 258</line>
<line>GLY CA 366</line>
<line>THR CA 406</line>
<line>PRO CA 404</line>
<line>GLU CA 328</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1WBS</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1WBSA</entryIDChain>
<sequence>KLILRLVGTPG</sequence>
<secondary-structure>HHHHHHH </secondary-structure>
<atom-coordinate>
<line>ATOM 1869 CA LYS A 233 -15.706 32.787 49.520 1.00 19.84 C </line>
<line>ATOM 1878 CA LEU A 234 -16.528 29.048 49.277 1.00 18.84 C </line>
<line>ATOM 1886 CA ILE A 235 -13.414 28.256 51.355 1.00 18.79 C </line>
<line>ATOM 1894 CA LEU A 236 -14.038 30.925 54.010 1.00 20.33 C </line>
<line>ATOM 1902 CA ARG A 237 -17.672 29.858 54.325 1.00 22.20 C </line>
<line>ATOM 1913 CA LEU A 238 -16.499 26.377 55.415 1.00 21.39 C </line>
<line>ATOM 1921 CA VAL A 239 -13.336 27.050 57.378 1.00 21.63 C </line>
<line>ATOM 1928 CA GLY A 240 -14.170 30.529 58.732 1.00 21.53 C </line>
<line>ATOM 1932 CA THR A 241 -12.669 33.962 57.995 1.00 22.32 C </line>
<line>ATOM 1939 CA PRO A 242 -9.116 34.451 59.364 1.00 24.34 C </line>
<line>ATOM 1946 CA GLY A 243 -8.272 35.941 62.743 1.00 27.05 C </line>
</atom-coordinate>
<distance-map>
<line> GLY PRO THR GLY VAL LEU ARG LEU ILE LEU LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 15.49 11.96 9.08 9.61 10.01 8.74 5.96 5.14 5.40 3.84 </line>
<line>LEU CA 17.23 13.63 10.73 9.86 8.93 6.69 5.24 5.67 3.83 </line>
<line>ILE CA 14.67 11.00 8.79 7.76 6.14 5.43 5.43 3.82 </line>
<line>LEU CA 11.60 8.08 5.19 4.74 5.18 5.36 3.80 </line>
<line>ARG CA 14.01 10.94 7.44 5.67 6.00 3.83 </line>
<line>LEU CA 14.59 11.63 8.88 5.80 3.78 </line>
<line>VAL CA 11.55 8.75 6.97 3.83 </line>
<line>GLY CA 8.95 6.43 3.82 </line>
<line>THR CA 6.77 3.84 </line>
<line>PRO CA 3.79 </line>
<line>GLY CA </line>
</distance-map>
<n14>
<line>LYS CA 349</line>
<line>LEU CA 384</line>
<line>ILE CA 464</line>
<line>LEU CA 398</line>
<line>ARG CA 307</line>
<line>LEU CA 350</line>
<line>VAL CA 395</line>
<line>GLY CA 325</line>
<line>THR CA 330</line>
<line>PRO CA 356</line>
<line>GLY CA 250</line>
</n14>
</entryChain>
<parallel>
<x>21.21500015258789</x>
<y>0.8149999976158142</y>
<z>11.949000358581543</z>
</parallel>
<rotation>
<x>0.3619999885559082</x>
<y>0.7210000157356262</y>
<z>0.5910000205039978</z>
<x>-0.18299999833106995</x>
<y>0.6769999861717224</y>
<z>-0.7129999995231628</z>
<x>-0.9139999747276306</x>
<y>0.15000000596046448</y>
<z>0.37700000405311584</z>
</rotation>
<rmsd>3.117201089859009</rmsd>
<dmax>4.379631042480469</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1WBS</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1WBSA</entryIDChain>
<sequence>THLMG-ADLNN</sequence>
<secondary-structure>E - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 838 CA THR A 106 7.427 5.802 33.101 1.00 21.60 C </line>
<line>ATOM 845 CA HIS A 107 4.729 3.152 33.693 1.00 22.76 C </line>
<line>ATOM 855 CA LEU A 108 1.574 3.856 31.680 1.00 24.44 C </line>
<line>ATOM 863 CA MET A 109 -1.287 5.204 33.799 1.00 28.10 C </line>
<line>ATOM 871 CA GLY A 110 -4.602 4.817 31.986 1.00 30.91 C </line>
<line>ATOM 875 CA ALA A 111 -6.915 5.458 34.977 1.00 26.96 C </line>
<line>ATOM 880 CA ASP A 112 -6.570 8.484 37.253 1.00 25.41 C </line>
<line>ATOM 888 CA LEU A 113 -8.460 9.371 40.464 1.00 25.96 C </line>
<line>ATOM 896 CA ASN A 114 -10.875 11.615 38.580 1.00 28.78 C </line>
<line>ATOM 904 CA ASN A 115 -12.312 8.697 36.611 1.00 31.47 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ASN LEU ASP ALA GLY MET LEU HIS THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 20.26 19.97 17.87 14.84 14.47 12.12 8.76 6.33 3.83 </line>
<line>HIS CA 18.16 18.41 16.08 12.99 11.94 9.63 6.36 3.81 </line>
<line>LEU CA 15.51 16.21 14.43 10.90 9.25 6.26 3.81 </line>
<line>MET CA 11.90 12.49 10.64 7.11 5.76 3.80 </line>
<line>GLY CA 9.79 11.36 10.37 6.71 3.83 </line>
<line>ALA CA 6.50 8.16 6.91 3.80 </line>
<line>ASP CA 5.78 5.49 3.83 </line>
<line>LEU CA 5.49 3.80 </line>
<line>ASN CA 3.80 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>THR CA 471</line>
<line>HIS CA 407</line>
<line>LEU CA 378</line>
<line>MET CA 359</line>
<line>GLY CA 289</line>
<line>ALA CA 280</line>
<line>ASP CA 350</line>
<line>LEU CA 414</line>
<line>ASN CA 362</line>
<line>ASN CA 260</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1F3M</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>1F3MD</entryIDChain>
<sequence>MEYLAGGSLTD</sequence>
<secondary-structure>E EEEEEHH</secondary-structure>
<atom-coordinate>
<line>ATOM 4120 CA MET D 344 6.582 64.358 50.183 1.00 47.79 C </line>
<line>ATOM 4128 CA GLU D 345 5.756 65.692 53.640 1.00 50.43 C </line>
<line>ATOM 4137 CA TYR D 346 8.658 65.775 56.065 1.00 52.30 C </line>
<line>ATOM 4149 CA LEU D 347 8.013 65.417 59.775 1.00 52.06 C </line>
<line>ATOM 4157 CA ALA D 348 10.739 66.712 62.077 1.00 51.69 C </line>
<line>ATOM 4162 CA GLY D 349 11.509 64.960 65.347 1.00 52.10 C </line>
<line>ATOM 4166 CA GLY D 350 12.593 61.365 65.874 1.00 52.59 C </line>
<line>ATOM 4170 CA SER D 351 11.735 57.679 65.533 1.00 52.26 C </line>
<line>ATOM 4176 CA LEU D 352 9.610 55.563 67.865 1.00 50.77 C </line>
<line>ATOM 4184 CA THR D 353 12.674 53.311 67.837 1.00 52.87 C </line>
<line>ATOM 4191 CA ASP D 354 14.830 55.838 69.670 1.00 56.77 C </line>
</atom-coordinate>
<distance-map>
<line> ASP THR LEU SER GLY GLY ALA LEU TYR GLU MET </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>MET CA 22.81 21.70 19.98 17.52 17.07 15.96 12.82 9.76 6.40 3.80 </line>
<line>GLU CA 20.89 20.07 17.88 15.54 14.67 13.06 9.85 6.54 3.78 </line>
<line>TYR CA 17.94 17.61 15.63 12.83 11.45 9.74 6.43 3.78 </line>
<line>LEU CA 15.37 15.27 12.85 10.34 8.64 6.59 3.80 </line>
<line>ALA CA 13.88 14.71 12.61 9.72 6.82 3.79 </line>
<line>GLY CA 10.63 11.97 9.91 7.29 3.79 </line>
<line>GLY CA 7.07 8.29 6.82 3.80 </line>
<line>SER CA 5.48 5.03 3.80 </line>
<line>LEU CA 5.53 3.80 </line>
<line>THR CA 3.79 </line>
<line>ASP CA </line>
</distance-map>
<n14>
<line>MET CA 502</line>
<line>GLU CA 432</line>
<line>TYR CA 426</line>
<line>LEU CA 357</line>
<line>ALA CA 312</line>
<line>GLY CA 310</line>
<line>GLY CA 346</line>
<line>SER CA 410</line>
<line>LEU CA 489</line>
<line>THR CA 410</line>
<line>ASP CA 326</line>
</n14>
</entryChain>
<parallel>
<x>-10.973999977111816</x>
<y>-57.051998138427734</y>
<z>-25.506999969482422</z>
</parallel>
<rotation>
<x>-0.382999986410141</x>
<y>0.6299999952316284</y>
<z>-0.6759999990463257</z>
<x>0.014000000432133675</x>
<y>-0.7279999852180481</y>
<z>-0.6859999895095825</z>
<x>-0.9240000247955322</x>
<y>-0.2720000147819519</y>
<z>0.26899999380111694</z>
</rotation>
<rmsd>1.5935289859771729</rmsd>
<dmax>2.4337949752807617</dmax>
</indel>