NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1F3WF-2VGGD
confEVID 1F3WF-2VGGD
pdbIDA 1F3W
pdbIDB 2VGG
pdbChainA F
pdbChainB D
identity 0.677699983119965
indelSize 2
alignment <alignment>
<seq1>IQTQQLHAAMADTFLEHMCRLDIDSAPITARNTGIICTIGPASRSVETLKEMIKSGMNVARMNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVDVGSKVYVDDGLISLQVKQKGPDFLVTEVENGGFLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAMFHRKLFEELARASSHSTDLMEAMAMGSVEASYKCLAAALIVLTESGRSAHQVARYRPRAPIIAVTRNHQTARQAHLYRGIFPVVCKDPVQEAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP</seq1>
<seq2>------PAA---TFLEHLCLL-IDSEPVAARSTSIIATIGPASRSVERLKEMIKAGMNIARLNFSHGSHEYHAESIANVREAVESFAGSPLSYRPVAIALDTKGPEIRTGILE----SEVELVKGSQ-LVTVDPAFRTRGNANTVWVDYPNIVRVVPVGGRIYIDDGLISLVVQKI--PELVTQVENGGVLGSRKGVNLPGAQVDLPGLSEQDVRDLRFGVEHGVDIVFASFVRKASDVAAVRAALGPEGHGIKIISKIENHEGVKRFDEILEVSDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNLAGKPVVCATQMLESMITKPRPTRAETSDVANAVLDGADCIMLSGETAKGNFPVEAVKMQHAIAREAEAAVYHRQLFEELRRAAPLSRDPTEVTAIGAVEAAFKCCAAAIIVLTTTGHSAQLLSRYRPRAAVIAVTRSAQAARQVHLCRGVFPLLYREPPEAIWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWRPGSGYTNIMRVLSI-</seq2>
<ss_1> HHHH HHHHHH EEEE HHHH HHHHHHHHH EEEEE HHHHHHHHHHHHHHHH HHHH EEEEE EE EEEEEE GGG EEE GGGGG EEEEEE EEEEEEE EEEEEEEE EEEE HHHHHHHHHHHH EEEE HHHHHHHHHHH GGG EEEE HHHHH HHHHHHH EEEE HHHHHHH HHHHHHHHHHHHHH EE GGG HHHHHHHHHHHH EEEE HHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHHH EEE HHHHHHHH EEEEE HHHHHGGGG HHHHHHHHHHHHHHHHHH EEEEEEE EEEEE </ss_1>
<ss_2>------ --- HHHGGG - EEEEEE HHHHHHHHH EEEEE HHHHHHHHHHHHHHHGGG EEEEE ---- EEE - EEE HHHH EEEEEE EEEEEEE -- EEEEEEEEEE EEE HHHHHHHHHHHH EEEE HHHHHHHHHH EEEEEE HHHHH HHHHHHH EEEE HHHHHHH HHHHHHHHHHHHHH EE GGG HHHHHHHHHHHH EEEE HHHHHHHHHHHHHHHGGG HHHHHHHHHHH HHHHHHHHHHHHH EEEE HHHHHHGGG EEEEEEEEHHHHHGGGG EEE HHHHHHHHHHHHHHHHH EEEEE EEEEE -</ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>2VGG</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2VGGD</entryIDChain>
<sequence>HLCLL-IDSEP</sequence>
<secondary-structure>HGGG - </secondary-structure>
<atom-coordinate>
<line>ATOM 11439 CA HIS D 72 -9.152 -4.708 17.377 1.00 75.07 C </line>
<line>ATOM 11449 CA LEU D 73 -10.410 -7.780 15.500 1.00 72.34 C </line>
<line>ATOM 11457 CA CYS D 74 -11.877 -9.308 18.641 1.00 71.62 C </line>
<line>ATOM 11463 CA LEU D 75 -14.254 -6.286 18.917 1.00 69.65 C </line>
<line>ATOM 11471 CA LEU D 76 -15.801 -6.129 15.458 1.00 67.83 C </line>
<line>ATOM 11479 CA ILE D 78 -22.201 -7.160 13.845 1.00 68.16 C </line>
<line>ATOM 11487 CA ASP D 79 -24.887 -4.797 15.129 1.00 71.07 C </line>
<line>ATOM 11495 CA SER D 80 -22.634 -1.808 14.961 1.00 72.69 C </line>
<line>ATOM 11501 CA GLU D 81 -24.512 -0.082 12.121 1.00 72.83 C </line>
<line>ATOM 11510 CA PRO D 82 -22.121 1.626 9.728 1.00 71.18 C </line>
</atom-coordinate>
<distance-map>
<line> PRO GLU SER ASP ILE LEU LEU CYS LEU HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 16.33 16.88 14.00 15.90 13.74 7.06 5.56 5.49 3.81 </line>
<line>LEU CA 16.09 16.42 13.62 14.79 11.92 5.64 5.36 3.79 </line>
<line>CYS CA 17.43 16.95 13.62 14.21 11.58 5.97 3.85 </line>
<line>LEU CA 14.45 13.78 10.29 11.39 9.47 3.79 </line>
<line>LEU CA 11.53 11.12 8.10 9.19 6.68 </line>
<line>ILE CA 9.70 7.64 5.48 3.80 </line>
<line>ASP CA 8.84 5.61 3.75 </line>
<line>SER CA 6.28 3.82 </line>
<line>GLU CA 3.79 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>HIS CA 191</line>
<line>LEU CA 195</line>
<line>CYS CA 136</line>
<line>LEU CA 171</line>
<line>LEU CA 210</line>
<line>ILE CA 151</line>
<line>ASP CA 115</line>
<line>SER CA 157</line>
<line>GLU CA 160</line>
<line>PRO CA 234</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1F3W</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1F3WF</entryIDChain>
<sequence>HMCRLDIDSAP</sequence>
<secondary-structure>HHH </secondary-structure>
<atom-coordinate>
<line>ATOM 19923 CA HIS F 28 56.711 22.905 66.917 1.00 34.09 C </line>
<line>ATOM 19933 CA MET F 29 58.766 24.438 69.691 1.00 30.97 C </line>
<line>ATOM 19941 CA CYS F 30 61.710 22.116 69.062 1.00 28.88 C </line>
<line>ATOM 19947 CA ARG F 31 61.765 23.040 65.390 1.00 30.72 C </line>
<line>ATOM 19958 CA LEU F 32 61.995 26.826 65.708 1.00 26.88 C </line>
<line>ATOM 19966 CA ASP F 33 64.993 27.849 63.621 1.00 31.69 C </line>
<line>ATOM 19974 CA ILE F 34 66.917 31.116 64.199 1.00 33.69 C </line>
<line>ATOM 19982 CA ASP F 35 68.170 30.714 60.641 1.00 36.18 C </line>
<line>ATOM 19990 CA SER F 36 64.671 30.534 59.137 1.00 33.59 C </line>
<line>ATOM 19996 CA ALA F 37 64.073 33.973 57.620 1.00 31.80 C </line>
<line>ATOM 20001 CA PRO F 38 60.666 35.610 58.275 1.00 31.42 C </line>
</atom-coordinate>
<distance-map>
<line> PRO ALA SER ASP ILE ASP LEU ARG CYS MET HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 15.87 16.22 13.49 15.22 13.38 10.19 6.69 5.28 5.50 3.78 </line>
<line>MET CA 16.09 16.27 13.54 14.48 11.88 9.34 5.66 5.43 3.80 </line>
<line>CYS CA 17.31 16.65 13.35 13.66 11.48 8.56 5.79 3.79 </line>
<line>ARG CA 14.49 13.61 10.18 11.07 9.65 6.06 3.81 </line>
<line>LEU CA 11.58 10.99 8.01 8.88 6.70 3.79 </line>
<line>ASP CA 10.37 8.62 5.24 5.21 3.84 </line>
<line>ILE CA 9.71 7.72 5.57 3.79 </line>
<line>ASP CA 9.27 6.04 3.81 </line>
<line>SER CA 6.52 3.81 </line>
<line>ALA CA 3.84 </line>
<line>PRO CA </line>
</distance-map>
<n14>
<line>HIS CA 260</line>
<line>MET CA 246</line>
<line>CYS CA 191</line>
<line>ARG CA 249</line>
<line>LEU CA 281</line>
<line>ASP CA 228</line>
<line>ILE CA 205</line>
<line>ASP CA 166</line>
<line>SER CA 228</line>
<line>ALA CA 234</line>
<line>PRO CA 328</line>
</n14>
</entryChain>
<parallel>
<x>-78.98999786376953</x>
<y>-32.45800018310547</y>
<z>-48.8650016784668</z>
</parallel>
<rotation>
<x>-0.7820000052452087</x>
<y>-0.5550000071525574</y>
<z>0.28299999237060547</z>
<x>-0.4090000092983246</x>
<y>0.11500000208616257</y>
<z>-0.9049999713897705</z>
<x>0.4699999988079071</x>
<y>-0.8240000009536743</y>
<z>-0.31700000166893005</z>
</rotation>
<rmsd>0.25594401359558105</rmsd>
<dmax>0.4025309979915619</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2VGG</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>2VGGD</entryIDChain>
<sequence>TGILE----SEVEL</sequence>
<secondary-structure> ---- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 12128 CA THR D 164 -9.837 -16.527 -30.789 1.00 57.62 C </line>
<line>ATOM 12135 CA GLY D 165 -12.173 -16.184 -33.821 1.00 59.51 C </line>
<line>ATOM 12139 CA ILE D 166 -15.948 -16.218 -34.314 1.00 60.23 C </line>
<line>ATOM 12147 CA LEU D 167 -17.755 -19.542 -34.203 1.00 59.83 C </line>
<line>ATOM 12155 CA GLU D 172 -23.363 -17.768 -29.625 1.00 62.82 C </line>
<line>ATOM 12164 CA SER D 173 -22.802 -21.418 -30.573 1.00 63.51 C </line>
<line>ATOM 12170 CA GLU D 174 -20.460 -23.453 -28.366 1.00 64.02 C </line>
<line>ATOM 12179 CA VAL D 175 -17.746 -25.793 -29.703 1.00 64.16 C </line>
<line>ATOM 12186 CA GLU D 176 -16.651 -28.337 -27.052 1.00 62.42 C </line>
<line>ATOM 12195 CA LEU D 177 -12.824 -28.574 -26.948 1.00 60.05 C </line>
</atom-coordinate>
<distance-map>
<line> LEU GLU VAL GLU SER GLU LEU ILE GLY THR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 12.99 14.14 12.23 12.91 13.86 13.63 9.13 7.06 3.84 </line>
<line>GLY CA 14.18 14.61 11.85 12.30 12.28 12.06 6.53 3.81 </line>
<line>ILE CA 14.72 14.15 10.78 10.40 9.38 8.91 3.79 </line>
<line>LEU CA 12.59 11.39 7.70 7.53 6.49 7.45 </line>
<line>GLU CA 15.33 12.78 9.80 6.51 3.81 </line>
<line>SER CA 12.80 9.90 6.74 3.81 </line>
<line>GLU CA 9.30 6.33 3.82 </line>
<line>VAL CA 6.29 3.83 </line>
<line>GLU CA 3.84 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>THR CA 418</line>
<line>GLY CA 347</line>
<line>ILE CA 273</line>
<line>LEU CA 245</line>
<line>GLU CA 134</line>
<line>SER CA 152</line>
<line>GLU CA 195</line>
<line>VAL CA 241</line>
<line>GLU CA 239</line>
<line>LEU CA 307</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1F3W</pdbID>
<pdbChain>F</pdbChain>
<entryIDChain>1F3WF</entryIDChain>
<sequence>TGLIKGSGTAEVEL</sequence>
<secondary-structure> </secondary-structure>
<atom-coordinate>
<line>ATOM 20628 CA THR F 120 49.564 63.713 93.596 1.00 60.49 C </line>
<line>ATOM 20635 CA GLY F 121 50.330 67.424 93.343 1.00 67.64 C </line>
<line>ATOM 20639 CA LEU F 122 53.541 69.308 92.591 1.00 75.07 C </line>
<line>ATOM 20647 CA ILE F 123 56.645 69.004 94.751 1.00 82.90 C </line>
<line>ATOM 20655 CA LYS F 124 58.240 71.889 96.699 1.00 92.67 C </line>
<line>ATOM 20660 CA GLY F 125 60.252 72.823 93.615 1.00101.18 C </line>
<line>ATOM 20664 CA SER F 126 63.723 73.555 94.971 1.00107.15 C </line>
<line>ATOM 20670 CA GLY F 127 63.680 70.119 96.575 1.00110.33 C </line>
<line>ATOM 20674 CA THR F 128 64.801 68.391 93.353 1.00111.50 C </line>
<line>ATOM 20681 CA ALA F 129 61.184 68.483 92.130 1.00108.52 C </line>
<line>ATOM 20686 CA GLU F 130 61.538 65.109 93.893 1.00104.32 C </line>
<line>ATOM 20695 CA VAL F 131 61.378 64.600 97.672 1.00 98.23 C </line>
<line>ATOM 20702 CA GLU F 132 62.833 61.494 99.359 1.00 95.07 C </line>
<line>ATOM 20707 CA LEU F 133 60.484 59.288 101.400 1.00 92.29 C </line>
</atom-coordinate>
<distance-map>
<line> LEU GLU VAL GLU ALA THR GLY SER GLY LYS ILE LEU GLY THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 14.13 14.64 12.53 12.06 12.65 15.94 15.79 17.30 14.04 12.32 8.91 6.94 3.80 </line>
<line>GLY CA 15.30 15.09 12.20 11.46 10.97 14.50 14.00 14.82 11.30 9.68 6.66 3.80 </line>
<line>LEU CA 15.04 13.90 10.46 9.13 7.70 11.32 10.92 11.29 7.64 6.75 3.79 </line>
<line>ILE CA 12.38 10.77 7.09 6.31 5.27 8.30 7.35 8.42 5.37 3.83 </line>
<line>LYS CA 13.64 11.67 8.00 8.04 6.41 8.15 5.72 5.99 3.80 </line>
<line>GLY CA 15.62 12.96 9.24 7.83 4.68 6.36 5.27 3.80 </line>
<line>SER CA 15.98 12.87 9.64 8.79 6.34 5.52 3.79 </line>
<line>GLY CA 12.28 9.10 6.08 6.07 5.35 3.82 </line>
<line>THR CA 12.89 9.35 6.69 4.66 3.82 </line>
<line>ALA CA 13.08 10.19 6.77 3.82 </line>
<line>GLU CA 9.56 6.68 3.82 </line>
<line>VAL CA 6.55 3.82 </line>
<line>GLU CA 3.81 </line>
<line>LEU CA </line>
</distance-map>
<n14>
<line>THR CA 441</line>
<line>GLY CA 358</line>
<line>LEU CA 310</line>
<line>ILE CA 302</line>
<line>LYS CA 233</line>
<line>GLY CA 178</line>
<line>SER CA 126</line>
<line>GLY CA 167</line>
<line>THR CA 152</line>
<line>ALA CA 199</line>
<line>GLU CA 244</line>
<line>VAL CA 280</line>
<line>GLU CA 275</line>
<line>LEU CA 310</line>
</n14>
</entryChain>
<parallel>
<x>-74.06300354003906</x>
<y>-87.05400085449219</y>
<z>-125.75900268554688</z>
</parallel>
<rotation>
<x>-0.7179999947547913</x>
<y>-0.6830000281333923</y>
<z>0.1379999965429306</z>
<x>-0.6959999799728394</x>
<y>0.6940000057220459</y>
<z>-0.18400000035762787</z>
<x>-0.029999999329447746</x>
<y>0.2280000001192093</y>
<z>0.9729999899864197</z>
</rotation>
<rmsd>2.468641996383667</rmsd>
<dmax>3.464207887649536</dmax>
</indel>