NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1F3XB-3GQYD
confEVID 1F3XB-3GQYD
pdbIDA 1F3X
pdbIDB 3GQY
pdbChainA B
pdbChainB D
identity 0.913100004196167
indelSize 1
alignment <alignment>
<seq1>IQTQQLHAAMADTFLEHMCRLDIDSAPITARNTGIICTIGPASRSVETLKEMIKSGMNVARMNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVDVGSKVYVDDGLISLQVKQKGPDFLVTEVENGGFLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAMFHRKLFEELARASPHSTDLMEAMAMGSVEASYKCLAAALIVLTESGRSAHQVARYRPRAPIIAVTRNHQTARQAHLYRGIFPVVCKDPVQEAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP</seq1>
<seq2>-QTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPEIRT-----------ELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLISLQVKQK--DFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP</seq2>
<ss_1> GGG HHHHHH EEEE HHHH HHHHHHHHH EEEEE HHHHHHHHHHHHHHHH EEEEE EE EEEE EEE GGHHHH EEEEEE EEEEEEEEEEEEEEEE EEE EEE HHHHHHHHHHHH EEEE HHHHHHHHHHH EEEE HHHHH HHHHHHH EEEE HHHHHHH HHHHHHHHHHHHHH EE GGG HHHHHHHHHHHH EEEE HHHHHHHHHHHHHHHHH HHHHHHHHHHH HHHHHHHHHHHHHH EEEE HHHHHHHH EEEEEEEHHHHHGGGG EEE HHHHHHHHHHHHHHHHHH EEEEEEE EEEEE </ss_1>
<ss_2>- HHHH HHHHHH EEEE HHHHHHHHH EEEEE HHHHHHHHHHHHHHHGGG EEEEE ----------- EEEEEE GGG EE HHHH EEEEEE EEEEEEE -- EEEEEEE EEE HHHHHHHHHHHH EEEE HHHHHHHHHHH EEEEEE HHHHH HHHHHHH EEEE HHHHHHH HHHHHHHHHHHHHH EE GGG HHHHHHHHHHHH EEEE HHHHHHHHHHHHHHHHH HHHHHHHHHH HHHHHHHHHHHHH EEE HHHHHHGGG EEEEE HHHHHGGGG EEE HHHHHHHHHHHHHHHHHH EEEEEEE EEEEE </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>3GQY</pdbID>
<pdbChain>D</pdbChain>
<entryIDChain>3GQYD</entryIDChain>
<sequence>QVKQK--DFLVT</sequence>
<secondary-structure>EEEE -- EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 12504 CA GLN D 184 2.945 -24.066 65.500 1.00 50.50 C </line>
<line>ATOM 12513 CA VAL D 185 1.128 -21.750 67.937 1.00 52.02 C </line>
<line>ATOM 12520 CA LYS D 186 -2.289 -23.066 69.063 1.00 55.36 C </line>
<line>ATOM 12529 CA GLN D 187 -3.031 -20.814 72.076 1.00 57.15 C </line>
<line>ATOM 12534 CA LYS D 188 -1.502 -17.332 72.581 1.00 57.96 C </line>
<line>ATOM 12539 CA ASP D 191 3.483 -14.862 79.410 1.00 58.96 C </line>
<line>ATOM 12544 CA PHE D 192 2.956 -18.128 77.478 1.00 57.56 C </line>
<line>ATOM 12555 CA LEU D 193 2.165 -19.825 74.159 1.00 53.68 C </line>
<line>ATOM 12560 CA VAL D 194 0.718 -23.339 73.643 1.00 51.18 C </line>
<line>ATOM 12565 CA THR D 195 2.342 -24.920 70.575 1.00 49.06 C </line>
</atom-coordinate>
<distance-map>
<line> THR VAL LEU PHE ASP LYS GLN LYS VAL GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.18 8.47 9.67 13.37 16.69 10.74 9.46 6.41 3.82 </line>
<line>VAL CA 4.30 5.94 6.60 10.37 13.59 6.93 5.94 3.83 </line>
<line>LYS CA 5.21 5.49 7.50 11.08 14.41 6.77 3.83 </line>
<line>GLN CA 6.93 4.78 5.68 8.50 11.47 3.84 </line>
<line>LYS CA 8.74 6.49 4.71 6.67 8.81 </line>
<line>ASP CA 13.44 10.62 7.34 3.83 </line>
<line>PHE CA 9.70 6.85 3.81 </line>
<line>LEU CA 6.23 3.84 </line>
<line>VAL CA 3.81 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLN CA 284</line>
<line>VAL CA 280</line>
<line>LYS CA 186</line>
<line>GLN CA 179</line>
<line>LYS CA 195</line>
<line>ASP CA 203</line>
<line>PHE CA 265</line>
<line>LEU CA 291</line>
<line>VAL CA 249</line>
<line>THR CA 297</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1F3X</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1F3XB</entryIDChain>
<sequence>QVKQKGPDFLVT</sequence>
<secondary-structure>EEEEEEEEEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 5285 CA GLN B 183 5.976 -36.673 -33.386 1.00 49.42 C </line>
<line>ATOM 5294 CA VAL B 184 3.212 -38.808 -34.910 1.00 53.38 C </line>
<line>ATOM 5301 CA LYS B 185 3.787 -38.892 -38.680 1.00 60.22 C </line>
<line>ATOM 5310 CA GLN B 186 1.375 -41.679 -39.653 1.00 65.15 C </line>
<line>ATOM 5319 CA LYS B 187 -1.652 -42.561 -37.522 1.00 66.02 C </line>
<line>ATOM 5328 CA GLY B 188 -2.173 -46.131 -38.682 1.00 69.78 C </line>
<line>ATOM 5332 CA PRO B 189 -5.003 -48.208 -37.175 1.00 72.76 C </line>
<line>ATOM 5339 CA ASP B 190 -3.891 -49.723 -33.840 1.00 71.23 C </line>
<line>ATOM 5347 CA PHE B 191 -0.353 -48.293 -34.010 1.00 62.17 C </line>
<line>ATOM 5358 CA LEU B 192 1.533 -45.074 -34.690 1.00 51.26 C </line>
<line>ATOM 5366 CA VAL B 193 4.551 -44.357 -36.849 1.00 46.03 C </line>
<line>ATOM 5373 CA THR B 194 6.476 -41.470 -35.341 1.00 42.32 C </line>
</atom-coordinate>
<distance-map>
<line> THR VAL LEU PHE ASP PRO GLY LYS GLN LYS VAL GLN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>GLN CA 5.20 8.55 9.59 13.25 16.37 16.37 13.56 10.49 9.25 6.14 3.81 </line>
<line>VAL CA 4.23 6.03 6.49 10.17 13.07 12.69 9.84 6.68 5.84 3.81 </line>
<line>LYS CA 5.00 5.81 7.70 11.28 14.13 12.90 9.38 6.66 3.81 </line>
<line>GLN CA 6.68 5.01 6.02 8.86 11.24 9.46 5.78 3.81 </line>
<line>LYS CA 8.49 6.49 4.95 6.85 8.36 6.58 3.79 </line>
<line>GLY CA 10.38 7.19 5.55 5.46 6.27 3.82 </line>
<line>PRO CA 13.44 10.31 7.66 5.63 3.83 </line>
<line>ASP CA 13.34 10.45 7.19 3.82 </line>
<line>PHE CA 9.74 6.90 3.79 </line>
<line>LEU CA 6.15 3.78 </line>
<line>VAL CA 3.78 </line>
<line>THR CA </line>
</distance-map>
<n14>
<line>GLN CA 337</line>
<line>VAL CA 341</line>
<line>LYS CA 238</line>
<line>GLN CA 231</line>
<line>LYS CA 247</line>
<line>GLY CA 213</line>
<line>PRO CA 192</line>
<line>ASP CA 259</line>
<line>PHE CA 330</line>
<line>LEU CA 357</line>
<line>VAL CA 317</line>
<line>THR CA 364</line>
</n14>
</entryChain>
<parallel>
<x>-0.515999972820282</x>
<y>22.732999801635742</y>
<z>108.11199951171875</z>
</parallel>
<rotation>
<x>0.18000000715255737</x>
<y>-0.9819999933242798</y>
<z>-0.06300000101327896</z>
<x>-0.19699999690055847</x>
<y>0.026000000536441803</y>
<z>-0.9800000190734863</z>
<x>0.9639999866485596</x>
<y>0.1889999955892563</y>
<z>-0.1889999955892563</z>
</rotation>
<rmsd>0.3038640022277832</rmsd>
<dmax>0.5042700171470642</dmax>
</indel>