NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1FKQA-1VEDA
confEVID 1FKQA-1VEDA
pdbIDA 1FKQ
pdbIDB 1VED
pdbChainA A
pdbChainB A
identity 0.375
indelSize 3
alignment <alignment>
<seq1>MEQLTKCEVFQKL--KDLKDYGGVSLPEWVCVAFHTSGYDTQAIVQNN-DSTEYGLFQINNKIWCKDDQNPHSRNICNISCDKFLDDDLTDDIVCAKKILD-KVGINYWLAHKALCSE-KLDQWLCEKL-</seq1>
<seq2>-KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq2>
<ss_1> HHHHHHH --GGG GGG HHHHHHHHHH EEE - EEEEE EE GGGG HHHHHHHHHHHH- - GGGG -</ss_1>
<ss_2>- HHHHHHHHHH GGG HHHHHHHHHH EEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1FKQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1FKQA</entryIDChain>
<sequence>IVQNN-DSTEY</sequence>
<secondary-structure>EE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 328 CA ILE A 41 12.748 24.258 19.734 1.00 13.04 C </line>
<line>ATOM 336 CA VAL A 42 11.256 27.706 20.179 1.00 11.64 C </line>
<line>ATOM 343 CA GLN A 43 10.993 30.648 17.784 1.00 12.66 C </line>
<line>ATOM 352 CA ASN A 44 12.192 33.854 19.426 1.00 16.33 C </line>
<line>ATOM 360 CA ASN A 45 12.173 37.534 18.417 1.00 16.92 C </line>
<line>ATOM 368 CA ASP A 46 15.399 37.284 16.446 1.00 18.68 C </line>
<line>ATOM 376 CA SER A 47 16.428 33.655 16.793 1.00 14.58 C </line>
<line>ATOM 382 CA THR A 48 15.416 30.033 17.292 1.00 11.43 C </line>
<line>ATOM 389 CA GLU A 49 16.343 28.311 20.557 1.00 10.82 C </line>
<line>ATOM 398 CA TYR A 50 17.269 24.631 20.850 1.00 7.90 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 4.67 5.48 6.81 10.51 13.69 13.35 9.62 6.91 3.78 </line>
<line>VAL CA 6.79 5.14 5.57 8.58 11.08 10.03 6.26 3.80 </line>
<line>GLN CA 9.22 6.46 4.49 6.29 8.08 7.01 3.80 </line>
<line>ASN CA 10.62 7.02 5.44 4.99 5.56 3.82 </line>
<line>ASN CA 14.08 10.35 8.25 5.98 3.79 </line>
<line>ASP CA 13.53 9.91 7.30 3.79 </line>
<line>SER CA 9.93 6.54 3.79 </line>
<line>THR CA 6.73 3.81 </line>
<line>GLU CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 311</line>
<line>VAL CA 268</line>
<line>GLN CA 201</line>
<line>ASN CA 197</line>
<line>ASN CA 141</line>
<line>ASP CA 199</line>
<line>SER CA 270</line>
<line>THR CA 310</line>
<line>GLU CA 398</line>
<line>TYR CA 446</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VED</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1VEDA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure> EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 5.043 27.447 11.223 1.00 21.42 C </line>
<line>ATOM 340 CA ASN A 44 8.822 27.489 10.859 1.00 24.22 C </line>
<line>ATOM 348 CA ARG A 45 11.163 30.366 11.629 1.00 24.26 C </line>
<line>ATOM 359 CA ASN A 46 14.201 30.980 9.412 1.00 23.52 C </line>
<line>ATOM 367 CA THR A 47 17.619 32.593 9.872 1.00 25.15 C </line>
<line>ATOM 374 CA ASP A 48 16.745 35.640 7.761 1.00 24.69 C </line>
<line>ATOM 382 CA GLY A 49 13.986 36.494 10.223 1.00 23.99 C </line>
<line>ATOM 386 CA SER A 50 11.228 35.209 7.949 1.00 19.71 C </line>
<line>ATOM 392 CA THR A 51 8.676 32.569 8.871 1.00 16.28 C </line>
<line>ATOM 399 CA ASP A 52 6.960 29.912 6.754 1.00 16.20 C </line>
<line>ATOM 407 CA TYR A 53 3.211 29.697 7.311 1.00 16.71 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.87 5.45 6.71 10.45 12.76 14.70 13.66 9.98 6.79 3.80 </line>
<line>ASN CA 7.00 5.12 5.46 8.59 10.40 11.78 10.22 6.57 3.79 </line>
<line>ARG CA 9.07 6.45 4.32 6.08 6.89 8.60 7.05 3.81 </line>
<line>ASN CA 11.26 7.79 5.77 5.37 5.58 5.56 3.81 </line>
<line>THR CA 14.92 11.42 9.00 7.17 5.34 3.81 </line>
<line>ASP CA 14.79 11.38 8.70 5.54 3.80 </line>
<line>GLY CA 13.07 10.23 6.74 3.80 </line>
<line>SER CA 9.75 6.91 3.79 </line>
<line>THR CA 6.37 3.81 </line>
<line>ASP CA 3.80 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 292</line>
<line>ASN CA 271</line>
<line>ARG CA 218</line>
<line>ASN CA 204</line>
<line>THR CA 144</line>
<line>ASP CA 166</line>
<line>GLY CA 196</line>
<line>SER CA 260</line>
<line>THR CA 317</line>
<line>ASP CA 413</line>
<line>TYR CA 425</line>
</n14>
</entryChain>
<parallel>
<x>1.9830000400543213</x>
<y>0.2280000001192093</y>
<z>8.253999710083008</z>
</parallel>
<rotation>
<x>-0.3919999897480011</x>
<y>0.8970000147819519</y>
<z>0.20600000023841858</z>
<x>0.5860000252723694</x>
<y>0.41499999165534973</y>
<z>-0.6959999799728394</z>
<x>-0.7099999785423279</x>
<y>-0.15199999511241913</y>
<z>-0.6880000233650208</z>
</rotation>
<rmsd>0.832256019115448</rmsd>
<dmax>1.6355140209197998</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1FKQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1FKQA</entryIDChain>
<sequence>KKILD-KVGIN</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 746 CA LYS A 93 29.319 26.984 30.276 1.00 10.06 C </line>
<line>ATOM 755 CA LYS A 94 30.419 29.309 27.461 1.00 10.59 C </line>
<line>ATOM 764 CA ILE A 95 27.076 31.157 27.692 1.00 9.90 C </line>
<line>ATOM 772 CA LEU A 96 27.328 31.552 31.480 1.00 10.96 C </line>
<line>ATOM 780 CA ASP A 97 30.906 32.775 31.021 1.00 12.41 C </line>
<line>ATOM 788 CA LYS A 98 30.036 35.334 28.347 1.00 14.74 C </line>
<line>ATOM 797 CA VAL A 99 26.564 36.648 29.229 1.00 12.41 C </line>
<line>ATOM 804 CA GLY A 100 25.698 35.309 32.676 1.00 15.20 C </line>
<line>ATOM 808 CA ILE A 101 22.732 33.537 34.278 1.00 13.77 C </line>
<line>ATOM 816 CA ASN A 102 20.362 36.096 32.786 1.00 14.41 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ILE GLY VAL LYS ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.02 10.12 9.39 10.10 8.60 6.05 5.13 5.40 3.81 </line>
<line>LYS CA 13.25 11.11 9.25 8.48 6.10 4.99 5.54 3.83 </line>
<line>ILE CA 9.77 8.24 6.63 5.72 5.16 5.33 3.82 </line>
<line>LEU CA 8.42 5.74 4.27 5.62 5.61 3.81 </line>
<line>ASP CA 11.19 8.83 6.02 6.09 3.80 </line>
<line>LYS CA 10.67 9.58 6.13 3.82 </line>
<line>VAL CA 7.17 7.06 3.80 </line>
<line>GLY CA 5.39 3.81 </line>
<line>ILE CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 365</line>
<line>LYS CA 317</line>
<line>ILE CA 364</line>
<line>LEU CA 325</line>
<line>ASP CA 240</line>
<line>LYS CA 216</line>
<line>VAL CA 245</line>
<line>GLY CA 274</line>
<line>ILE CA 333</line>
<line>ASN CA 273</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VED</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1VEDA</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 731 CA LYS A 96 -1.084 29.781 -7.560 1.00 17.41 C </line>
<line>ATOM 740 CA LYS A 97 0.640 33.174 -7.686 1.00 19.12 C </line>
<line>ATOM 749 CA ILE A 98 3.914 31.677 -6.435 1.00 20.86 C </line>
<line>ATOM 757 CA VAL A 99 3.989 28.855 -8.998 1.00 29.40 C </line>
<line>ATOM 764 CA SER A 100 3.259 31.406 -11.730 1.00 37.81 C </line>
<line>ATOM 770 CA ASP A 101 6.363 33.290 -10.561 1.00 47.01 C </line>
<line>ATOM 778 CA GLY A 102 8.563 31.593 -13.133 1.00 46.74 C </line>
<line>ATOM 782 CA ASN A 103 10.210 28.761 -11.225 1.00 41.14 C </line>
<line>ATOM 790 CA GLY A 104 7.353 26.283 -10.954 1.00 29.58 C </line>
<line>ATOM 794 CA MET A 105 7.140 24.336 -7.713 1.00 22.60 C </line>
<line>ATOM 802 CA ASN A 106 10.843 24.702 -6.971 1.00 25.27 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 12.98 9.86 9.74 11.92 11.29 8.76 6.24 5.35 5.46 3.81 </line>
<line>LYS CA 13.28 10.97 10.16 11.12 9.74 6.41 5.13 5.62 3.81 </line>
<line>ILE CA 9.85 8.12 7.83 8.43 8.15 5.06 5.34 3.81 </line>
<line>VAL CA 8.27 5.66 4.66 6.61 6.75 5.27 3.81 </line>
<line>SER CA 11.19 9.01 6.60 7.45 5.49 3.81 </line>
<line>ASP CA 10.33 9.43 7.09 5.98 3.79 </line>
<line>GLY CA 9.52 9.17 5.87 3.79 </line>
<line>ASN CA 5.91 6.43 3.79 </line>
<line>GLY CA 5.53 3.79 </line>
<line>MET CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 363</line>
<line>LYS CA 310</line>
<line>ILE CA 375</line>
<line>VAL CA 342</line>
<line>SER CA 240</line>
<line>ASP CA 232</line>
<line>GLY CA 181</line>
<line>ASN CA 211</line>
<line>GLY CA 284</line>
<line>MET CA 373</line>
<line>ASN CA 299</line>
</n14>
</entryChain>
<parallel>
<x>23.812999725341797</x>
<y>2.191999912261963</y>
<z>39.487998962402344</z>
</parallel>
<rotation>
<x>-0.43799999356269836</x>
<y>0.8379999995231628</y>
<z>-0.32600000500679016</z>
<x>0.5809999704360962</x>
<y>-0.013000000268220901</y>
<z>-0.8140000104904175</z>
<x>-0.6859999895095825</x>
<y>-0.5460000038146973</y>
<z>-0.48100000619888306</z>
</rotation>
<rmsd>1.2932560443878174</rmsd>
<dmax>2.310236930847168</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1FKQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1FKQA</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 882 CA ALA A 109 16.077 34.650 42.582 1.00 18.14 C </line>
<line>ATOM 887 CA LEU A 110 13.807 32.393 40.540 1.00 14.12 C </line>
<line>ATOM 895 CA CYS A 111 16.256 29.540 41.111 1.00 16.74 C </line>
<line>ATOM 901 CA SER A 112 18.689 30.829 43.723 1.00 30.24 C </line>
<line>ATOM 907 CA GLU A 113 16.129 30.090 46.454 1.00 38.58 C </line>
<line>ATOM 916 CA LYS A 114 14.536 27.024 48.066 1.00 36.05 C </line>
<line>ATOM 925 CA LEU A 115 17.114 24.788 46.348 1.00 31.68 C </line>
<line>ATOM 933 CA ASP A 116 16.391 21.581 48.303 1.00 32.39 C </line>
<line>ATOM 941 CA GLN A 117 13.315 20.955 46.163 1.00 28.43 C </line>
<line>ATOM 950 CA TRP A 118 15.592 20.428 43.156 1.00 25.24 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 14.24 14.42 14.27 10.61 9.52 5.98 4.77 5.32 3.80 </line>
<line>LEU CA 12.38 12.75 13.56 10.12 9.27 6.76 6.03 3.80 </line>
<line>CYS CA 9.36 10.39 10.73 7.12 7.59 5.37 3.80 </line>
<line>SER CA 10.87 11.50 10.57 6.77 7.11 3.82 </line>
<line>GLU CA 10.22 9.56 8.71 5.39 3.81 </line>
<line>LYS CA 8.29 6.48 5.76 3.82 </line>
<line>LEU CA 5.61 5.40 3.82 </line>
<line>ASP CA 5.33 3.80 </line>
<line>GLN CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 197</line>
<line>LEU CA 243</line>
<line>CYS CA 300</line>
<line>SER CA 264</line>
<line>GLU CA 197</line>
<line>LYS CA 172</line>
<line>LEU CA 247</line>
<line>ASP CA 202</line>
<line>GLN CA 232</line>
<line>TRP CA 319</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1VED</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1VEDA</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGG </secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ASN A 113 13.911 17.276 -2.556 1.00 25.85 C </line>
<line>ATOM 874 CA ARG A 114 11.227 14.653 -1.974 1.00 26.11 C </line>
<line>ATOM 885 CA CYS A 115 8.512 14.842 -4.648 1.00 22.43 C </line>
<line>ATOM 891 CA LYS A 116 10.085 15.922 -7.923 1.00 29.30 C </line>
<line>ATOM 900 CA GLY A 117 10.849 12.891 -10.058 1.00 34.49 C </line>
<line>ATOM 904 CA THR A 118 8.888 10.417 -7.931 1.00 32.36 C </line>
<line>ATOM 911 CA ASP A 119 5.597 8.633 -8.553 1.00 29.54 C </line>
<line>ATOM 919 CA VAL A 120 3.393 11.427 -7.243 1.00 27.84 C </line>
<line>ATOM 926 CA GLN A 121 0.296 9.538 -8.410 1.00 25.73 C </line>
<line>ATOM 935 CA ALA A 122 0.880 7.464 -5.280 1.00 21.01 C </line>
<line>ATOM 940 CA TRP A 123 -0.388 10.401 -3.260 1.00 21.04 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.88 16.54 16.72 12.92 13.41 10.06 9.21 6.73 6.28 3.80 </line>
<line>ARG CA 12.44 13.03 13.68 9.98 10.55 7.67 8.28 6.19 3.82 </line>
<line>CYS CA 10.04 10.63 10.48 6.68 7.89 5.52 6.21 3.79 </line>
<line>LYS CA 12.72 12.78 11.70 8.09 8.58 5.63 3.79 </line>
<line>GLY CA 13.37 12.32 11.19 8.10 6.93 3.81 </line>
<line>THR CA 10.39 8.94 8.65 5.63 3.79 </line>
<line>ASP CA 8.18 5.86 5.38 3.79 </line>
<line>VAL CA 5.59 5.09 3.81 </line>
<line>GLN CA 5.27 3.80 </line>
<line>ALA CA 3.78 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 207</line>
<line>ARG CA 243</line>
<line>CYS CA 302</line>
<line>LYS CA 269</line>
<line>GLY CA 196</line>
<line>THR CA 209</line>
<line>ASP CA 198</line>
<line>VAL CA 300</line>
<line>GLN CA 253</line>
<line>ALA CA 225</line>
<line>TRP CA 318</line>
</n14>
</entryChain>
<parallel>
<x>8.140999794006348</x>
<y>15.71399974822998</y>
<z>51.0620002746582</z>
</parallel>
<rotation>
<x>-0.2280000001192093</x>
<y>0.968999981880188</y>
<z>0.09300000220537186</z>
<x>0.7739999890327454</x>
<y>0.23800000548362732</y>
<z>-0.5860000252723694</z>
<x>-0.5910000205039978</x>
<y>-0.06199999898672104</y>
<z>-0.8050000071525574</z>
</rotation>
<rmsd>1.7299840450286865</rmsd>
<dmax>3.0300710201263428</dmax>
</indel>