NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1FKQA-2G4QA
confEVID 1FKQA-2G4QA
pdbIDA 1FKQ
pdbIDB 2G4Q
pdbChainA A
pdbChainB A
identity 0.375
indelSize 3
alignment <alignment>
<seq1>MEQLTKCEVFQKL--KDLKDYGGVSLPEWVCVAFHTSGYDTQAIVQNN-DSTEYGLFQINNKIWCKDDQNPHSRNICNISCDKFLDDDLTDDIVCAKKILD-KVGINYWLAHKALCSE-KLDQWLCEKL-</seq1>
<seq2>-KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL</seq2>
<ss_1> HHHHHHH --GGG GGG HHHHHHHHHH EEE - EEEEE EE GGGG HHHHHHHHHHHH- - GGGG -</ss_1>
<ss_2>- HHHHHHHHHH GGG HHHHHHHHHH EEEEE EEEEE EE GGGG HHHHHHHHHHH GGGG HHHHH GGGGG </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1FKQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1FKQA</entryIDChain>
<sequence>IVQNN-DSTEY</sequence>
<secondary-structure>EE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 328 CA ILE A 41 12.748 24.258 19.734 1.00 13.04 C </line>
<line>ATOM 336 CA VAL A 42 11.256 27.706 20.179 1.00 11.64 C </line>
<line>ATOM 343 CA GLN A 43 10.993 30.648 17.784 1.00 12.66 C </line>
<line>ATOM 352 CA ASN A 44 12.192 33.854 19.426 1.00 16.33 C </line>
<line>ATOM 360 CA ASN A 45 12.173 37.534 18.417 1.00 16.92 C </line>
<line>ATOM 368 CA ASP A 46 15.399 37.284 16.446 1.00 18.68 C </line>
<line>ATOM 376 CA SER A 47 16.428 33.655 16.793 1.00 14.58 C </line>
<line>ATOM 382 CA THR A 48 15.416 30.033 17.292 1.00 11.43 C </line>
<line>ATOM 389 CA GLU A 49 16.343 28.311 20.557 1.00 10.82 C </line>
<line>ATOM 398 CA TYR A 50 17.269 24.631 20.850 1.00 7.90 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU THR SER ASP ASN ASN GLN VAL ILE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ILE CA 4.67 5.48 6.81 10.51 13.69 13.35 9.62 6.91 3.78 </line>
<line>VAL CA 6.79 5.14 5.57 8.58 11.08 10.03 6.26 3.80 </line>
<line>GLN CA 9.22 6.46 4.49 6.29 8.08 7.01 3.80 </line>
<line>ASN CA 10.62 7.02 5.44 4.99 5.56 3.82 </line>
<line>ASN CA 14.08 10.35 8.25 5.98 3.79 </line>
<line>ASP CA 13.53 9.91 7.30 3.79 </line>
<line>SER CA 9.93 6.54 3.79 </line>
<line>THR CA 6.73 3.81 </line>
<line>GLU CA 3.81 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ILE CA 311</line>
<line>VAL CA 268</line>
<line>GLN CA 201</line>
<line>ASN CA 197</line>
<line>ASN CA 141</line>
<line>ASP CA 199</line>
<line>SER CA 270</line>
<line>THR CA 310</line>
<line>GLU CA 398</line>
<line>TYR CA 446</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2G4Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2G4QA</entryIDChain>
<sequence>TNRNTDGSTDY</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 333 CA THR A 43 9.564 14.526 17.508 1.00 26.26 C </line>
<line>ATOM 340 CA ASN A 44 11.700 17.455 18.686 1.00 27.98 C </line>
<line>ATOM 348 CA ARG A 45 14.097 17.726 21.630 1.00 30.68 C </line>
<line>ATOM 359 CA ASN A 46 13.730 20.936 23.649 1.00 32.30 C </line>
<line>ATOM 367 CA THR A 47 16.591 22.871 25.295 1.00 32.72 C </line>
<line>ATOM 374 CA ASP A 48 15.613 21.608 28.715 1.00 29.91 C </line>
<line>ATOM 382 CA GLY A 49 16.056 17.971 27.690 1.00 28.71 C </line>
<line>ATOM 386 CA SER A 50 12.371 17.330 27.296 1.00 25.57 C </line>
<line>ATOM 392 CA THR A 51 10.982 16.306 23.906 1.00 25.14 C </line>
<line>ATOM 399 CA ASP A 52 7.783 17.284 22.055 1.00 28.33 C </line>
<line>ATOM 407 CA TYR A 53 5.786 14.532 20.379 1.00 27.72 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP THR SER GLY ASP THR ASN ARG ASN THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 4.75 5.61 6.79 10.56 12.56 14.57 13.40 9.81 6.91 3.81 </line>
<line>ASN CA 6.81 5.17 5.39 8.64 10.02 11.54 9.85 6.39 3.81 </line>
<line>ARG CA 8.99 6.34 4.11 5.94 6.37 8.22 6.79 3.81 </line>
<line>ASN CA 10.72 7.16 5.39 5.31 5.53 5.45 3.83 </line>
<line>THR CA 14.51 10.92 8.75 7.25 5.48 3.77 </line>
<line>ASP CA 14.70 11.15 8.53 5.55 3.80 </line>
<line>GLY CA 13.07 10.03 6.54 3.76 </line>
<line>SER CA 9.95 6.97 3.80 </line>
<line>THR CA 6.53 3.82 </line>
<line>ASP CA 3.79 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>THR CA 302</line>
<line>ASN CA 277</line>
<line>ARG CA 223</line>
<line>ASN CA 222</line>
<line>THR CA 144</line>
<line>ASP CA 164</line>
<line>GLY CA 194</line>
<line>SER CA 263</line>
<line>THR CA 318</line>
<line>ASP CA 408</line>
<line>TYR CA 433</line>
</n14>
</entryChain>
<parallel>
<x>0.1889999955892563</x>
<y>13.730999946594238</y>
<z>-4.948999881744385</z>
</parallel>
<rotation>
<x>-0.6380000114440918</x>
<y>0.4749999940395355</y>
<z>-0.6060000061988831</z>
<x>-0.26100000739097595</x>
<y>0.6079999804496765</y>
<z>0.75</z>
<x>0.7250000238418579</x>
<y>0.6359999775886536</y>
<z>-0.2639999985694885</z>
</rotation>
<rmsd>0.963578999042511</rmsd>
<dmax>1.908120036125183</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1FKQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1FKQA</entryIDChain>
<sequence>KKILD-KVGIN</sequence>
<secondary-structure>HHHHH- </secondary-structure>
<atom-coordinate>
<line>ATOM 746 CA LYS A 93 29.319 26.984 30.276 1.00 10.06 C </line>
<line>ATOM 755 CA LYS A 94 30.419 29.309 27.461 1.00 10.59 C </line>
<line>ATOM 764 CA ILE A 95 27.076 31.157 27.692 1.00 9.90 C </line>
<line>ATOM 772 CA LEU A 96 27.328 31.552 31.480 1.00 10.96 C </line>
<line>ATOM 780 CA ASP A 97 30.906 32.775 31.021 1.00 12.41 C </line>
<line>ATOM 788 CA LYS A 98 30.036 35.334 28.347 1.00 14.74 C </line>
<line>ATOM 797 CA VAL A 99 26.564 36.648 29.229 1.00 12.41 C </line>
<line>ATOM 804 CA GLY A 100 25.698 35.309 32.676 1.00 15.20 C </line>
<line>ATOM 808 CA ILE A 101 22.732 33.537 34.278 1.00 13.77 C </line>
<line>ATOM 816 CA ASN A 102 20.362 36.096 32.786 1.00 14.41 C </line>
</atom-coordinate>
<distance-map>
<line> ASN ILE GLY VAL LYS ASP LEU ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.02 10.12 9.39 10.10 8.60 6.05 5.13 5.40 3.81 </line>
<line>LYS CA 13.25 11.11 9.25 8.48 6.10 4.99 5.54 3.83 </line>
<line>ILE CA 9.77 8.24 6.63 5.72 5.16 5.33 3.82 </line>
<line>LEU CA 8.42 5.74 4.27 5.62 5.61 3.81 </line>
<line>ASP CA 11.19 8.83 6.02 6.09 3.80 </line>
<line>LYS CA 10.67 9.58 6.13 3.82 </line>
<line>VAL CA 7.17 7.06 3.80 </line>
<line>GLY CA 5.39 3.81 </line>
<line>ILE CA 3.79 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 365</line>
<line>LYS CA 317</line>
<line>ILE CA 364</line>
<line>LEU CA 325</line>
<line>ASP CA 240</line>
<line>LYS CA 216</line>
<line>VAL CA 245</line>
<line>GLY CA 274</line>
<line>ILE CA 333</line>
<line>ASN CA 273</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2G4Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2G4QA</entryIDChain>
<sequence>KKIVSDGNGMN</sequence>
<secondary-structure>HHHH GGG</secondary-structure>
<atom-coordinate>
<line>ATOM 731 CA LYS A 96 -7.853 19.124 25.656 1.00 27.26 C </line>
<line>ATOM 740 CA LYS A 97 -6.158 18.905 29.088 1.00 28.25 C </line>
<line>ATOM 749 CA ILE A 98 -3.325 21.261 28.036 1.00 26.15 C </line>
<line>ATOM 757 CA VAL A 99 -5.635 23.963 26.620 1.00 26.75 C </line>
<line>ATOM 764 CA SER A 100 -7.740 23.797 29.805 1.00 28.75 C </line>
<line>ATOM 770 CA ASP A 101 -4.626 24.482 32.019 1.00 33.43 C </line>
<line>ATOM 778 CA GLY A 102 -5.286 28.268 32.232 1.00 31.14 C </line>
<line>ATOM 782 CA ASN A 103 -3.185 29.810 29.383 1.00 28.66 C </line>
<line>ATOM 790 CA GLY A 104 -5.439 28.394 26.658 1.00 26.31 C </line>
<line>ATOM 794 CA MET A 105 -3.629 27.871 23.351 1.00 25.27 C </line>
<line>ATOM 802 CA ASN A 106 -0.723 30.081 24.443 1.00 25.58 C </line>
</atom-coordinate>
<distance-map>
<line> ASN MET GLY ASN GLY ASP SER VAL ILE LYS LYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>LYS CA 13.13 9.98 9.63 12.24 11.55 8.92 6.25 5.41 5.54 3.83 </line>
<line>LYS CA 13.27 10.94 9.82 11.31 9.92 6.48 5.19 5.65 3.83 </line>
<line>ILE CA 9.87 8.11 7.57 8.66 8.40 5.29 5.39 3.83 </line>
<line>VAL CA 8.14 5.48 4.44 6.92 7.08 5.52 3.82 </line>
<line>SER CA 10.84 8.67 6.03 7.56 5.65 3.88 </line>
<line>ASP CA 10.20 9.36 6.69 6.12 3.85 </line>
<line>GLY CA 9.21 9.04 5.58 3.86 </line>
<line>ASN CA 5.53 6.35 3.81 </line>
<line>GLY CA 5.48 3.81 </line>
<line>MET CA 3.81 </line>
<line>ASN CA </line>
</distance-map>
<n14>
<line>LYS CA 364</line>
<line>LYS CA 321</line>
<line>ILE CA 385</line>
<line>VAL CA 352</line>
<line>SER CA 249</line>
<line>ASP CA 227</line>
<line>GLY CA 179</line>
<line>ASN CA 207</line>
<line>GLY CA 278</line>
<line>MET CA 375</line>
<line>ASN CA 295</line>
</n14>
</entryChain>
<parallel>
<x>33.99599838256836</x>
<y>8.192999839782715</y>
<z>1.3380000591278076</z>
</parallel>
<rotation>
<x>-0.6980000138282776</x>
<y>0.14000000059604645</y>
<z>-0.7020000219345093</z>
<x>-0.23100000619888306</x>
<y>0.8840000033378601</y>
<z>0.4059999883174896</z>
<x>0.6769999861717224</x>
<y>0.44600000977516174</y>
<z>-0.5849999785423279</z>
</rotation>
<rmsd>1.3643239736557007</rmsd>
<dmax>2.4836320877075195</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1FKQ</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>1FKQA</entryIDChain>
<sequence>ALCSE-KLDQW</sequence>
<secondary-structure> - GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 882 CA ALA A 109 16.077 34.650 42.582 1.00 18.14 C </line>
<line>ATOM 887 CA LEU A 110 13.807 32.393 40.540 1.00 14.12 C </line>
<line>ATOM 895 CA CYS A 111 16.256 29.540 41.111 1.00 16.74 C </line>
<line>ATOM 901 CA SER A 112 18.689 30.829 43.723 1.00 30.24 C </line>
<line>ATOM 907 CA GLU A 113 16.129 30.090 46.454 1.00 38.58 C </line>
<line>ATOM 916 CA LYS A 114 14.536 27.024 48.066 1.00 36.05 C </line>
<line>ATOM 925 CA LEU A 115 17.114 24.788 46.348 1.00 31.68 C </line>
<line>ATOM 933 CA ASP A 116 16.391 21.581 48.303 1.00 32.39 C </line>
<line>ATOM 941 CA GLN A 117 13.315 20.955 46.163 1.00 28.43 C </line>
<line>ATOM 950 CA TRP A 118 15.592 20.428 43.156 1.00 25.24 C </line>
</atom-coordinate>
<distance-map>
<line> TRP GLN ASP LEU LYS GLU SER CYS LEU ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 14.24 14.42 14.27 10.61 9.52 5.98 4.77 5.32 3.80 </line>
<line>LEU CA 12.38 12.75 13.56 10.12 9.27 6.76 6.03 3.80 </line>
<line>CYS CA 9.36 10.39 10.73 7.12 7.59 5.37 3.80 </line>
<line>SER CA 10.87 11.50 10.57 6.77 7.11 3.82 </line>
<line>GLU CA 10.22 9.56 8.71 5.39 3.81 </line>
<line>LYS CA 8.29 6.48 5.76 3.82 </line>
<line>LEU CA 5.61 5.40 3.82 </line>
<line>ASP CA 5.33 3.80 </line>
<line>GLN CA 3.81 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ALA CA 197</line>
<line>LEU CA 243</line>
<line>CYS CA 300</line>
<line>SER CA 264</line>
<line>GLU CA 197</line>
<line>LYS CA 172</line>
<line>LEU CA 247</line>
<line>ASP CA 202</line>
<line>GLN CA 232</line>
<line>TRP CA 319</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2G4Q</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2G4QA</entryIDChain>
<sequence>NRCKGTDVQAW</sequence>
<secondary-structure>H GGGG</secondary-structure>
<atom-coordinate>
<line>ATOM 866 CA ASN A 113 3.906 33.216 17.387 1.00 27.33 C </line>
<line>ATOM 874 CA ARG A 114 2.326 32.122 14.054 1.00 28.03 C </line>
<line>ATOM 885 CA CYS A 115 -1.455 31.666 14.422 1.00 26.94 C </line>
<line>ATOM 891 CA LYS A 116 -2.701 34.017 17.165 1.00 25.81 C </line>
<line>ATOM 900 CA GLY A 117 -3.914 37.234 15.669 1.00 29.51 C </line>
<line>ATOM 904 CA THR A 118 -4.060 35.897 12.097 1.00 29.07 C </line>
<line>ATOM 911 CA ASP A 119 -6.923 34.756 9.866 1.00 30.27 C </line>
<line>ATOM 919 CA VAL A 120 -6.879 31.173 11.129 1.00 29.79 C </line>
<line>ATOM 926 CA GLN A 121 -10.152 30.298 9.240 1.00 29.67 C </line>
<line>ATOM 935 CA ALA A 122 -7.925 30.285 6.157 1.00 28.60 C </line>
<line>ATOM 940 CA TRP A 123 -6.607 26.930 7.441 1.00 28.41 C </line>
</atom-coordinate>
<distance-map>
<line> TRP ALA GLN VAL ASP THR GLY LYS CYS ARG ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 15.78 16.57 16.51 12.64 13.27 9.93 8.96 6.66 6.32 3.85 </line>
<line>ARG CA 12.27 13.07 13.50 9.71 10.49 7.67 8.23 6.21 3.83 </line>
<line>CYS CA 9.88 10.59 10.22 6.36 7.76 5.49 6.21 3.82 </line>
<line>LYS CA 12.65 12.74 11.50 7.87 8.46 5.57 3.75 </line>
<line>GLY CA 13.46 12.44 11.33 8.13 6.99 3.82 </line>
<line>THR CA 10.42 9.04 8.75 5.59 3.80 </line>
<line>ASP CA 8.20 5.89 5.54 3.80 </line>
<line>VAL CA 5.63 5.16 3.88 </line>
<line>GLN CA 5.21 3.80 </line>
<line>ALA CA 3.83 </line>
<line>TRP CA </line>
</distance-map>
<n14>
<line>ASN CA 204</line>
<line>ARG CA 248</line>
<line>CYS CA 303</line>
<line>LYS CA 265</line>
<line>GLY CA 193</line>
<line>THR CA 210</line>
<line>ASP CA 194</line>
<line>VAL CA 298</line>
<line>GLN CA 269</line>
<line>ALA CA 220</line>
<line>TRP CA 320</line>
</n14>
</entryChain>
<parallel>
<x>19.349000930786133</x>
<y>-4.197999954223633</y>
<z>31.02400016784668</z>
</parallel>
<rotation>
<x>-0.492000013589859</x>
<y>0.6209999918937683</y>
<z>-0.6100000143051147</z>
<x>-0.20399999618530273</x>
<y>0.5989999771118164</y>
<z>0.7739999890327454</z>
<x>0.8460000157356262</x>
<y>0.5049999952316284</y>
<z>-0.1679999977350235</z>
</rotation>
<rmsd>1.7241549491882324</rmsd>
<dmax>2.892777919769287</dmax>
</indel>