NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1FONB-2IOTA
confEVID 1FONB-2IOTA
pdbIDA 1FON
pdbIDB 2IOT
pdbChainA B
pdbChainB A
identity 0.553600013256073
indelSize 3
alignment <alignment>
<seq1>----------SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGD-TRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIASN</seq1>
<seq2>VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNDGTEQYVGVQ--KIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSGCQGDSGGPLHCLVN-GQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN</seq2>
<ss_1>---------- EEEEEEEEEE EEE EEEE EEEEEEE GGG EEEEEEEEEE EEE EEEEE GGG EEEE EEEEE EEE HHHH GGG EEEEE - EEEEEEE EEEEEEEEEE EEEEEEGG HHHHHHHHH </ss_1>
<ss_2> EEEEEEEEE EEE EEEEEEEEEEEEE GGGG EEEEEE EEEE --EEEEE GGG EEEEE EEEEE EEEE HHHH GGG EEEEE EEE EEEEEEE - EEEEEEEEEE EEEEEEGG HHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1FON</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1FONB</entryIDChain>
<sequence>CAGGD-TRSGC</sequence>
<secondary-structure>EE - </secondary-structure>
<atom-coordinate>
<line>ATOM 3063 CA CYS B 174 33.557 24.812 5.867 1.00 5.27 C </line>
<line>ATOM 3069 CA ALA B 175 31.278 25.352 8.806 1.00 6.82 C </line>
<line>ATOM 3074 CA GLY B 176 31.965 25.807 12.507 1.00 8.55 C </line>
<line>ATOM 3078 CA GLY B 177 35.485 25.905 13.945 1.00 16.43 C </line>
<line>ATOM 3082 CA ASP B 178 34.579 28.017 16.936 1.00 19.51 C </line>
<line>ATOM 3090 CA THR B 179 32.285 27.498 19.929 1.00 21.87 C </line>
<line>ATOM 3097 CA ARG B 180 29.613 25.773 17.870 1.00 21.75 C </line>
<line>ATOM 3108 CA SER B 181 30.510 22.122 17.542 1.00 21.29 C </line>
<line>ATOM 3114 CA GLY B 182 29.801 20.039 14.472 1.00 13.91 C </line>
<line>ATOM 3118 CA CYS B 183 29.536 16.909 16.576 1.00 9.07 C </line>
</atom-coordinate>
<distance-map>
<line> CYS GLY SER ARG THR ASP GLY GLY ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 13.90 10.53 12.36 12.67 14.37 11.57 8.38 6.90 3.76 </line>
<line>ALA CA 11.61 7.91 9.35 9.23 11.37 9.17 6.66 3.79 </line>
<line>GLY CA 10.08 6.47 6.41 5.86 7.62 5.60 3.80 </line>
<line>GLY CA 11.10 8.19 7.21 7.06 6.97 3.77 </line>
<line>ASP CA 12.20 9.62 7.19 5.53 3.81 </line>
<line>THR CA 11.44 9.57 6.14 3.79 </line>
<line>ARG CA 8.96 6.67 3.77 </line>
<line>SER CA 5.39 3.78 </line>
<line>GLY CA 3.78 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>CYS CA 531</line>
<line>ALA CA 525</line>
<line>GLY CA 425</line>
<line>GLY CA 375</line>
<line>ASP CA 277</line>
<line>THR CA 186</line>
<line>ARG CA 260</line>
<line>SER CA 318</line>
<line>GLY CA 408</line>
<line>CYS CA 348</line>
</n14>
</entryChain>
<entryChain>
<pdbID>2IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2IOTA</entryIDChain>
<sequence>CAGGDGVRSGC</sequence>
<secondary-structure>EE EEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1337 CA CYS A 182 15.593 1.333 11.781 1.00 7.77 C </line>
<line>ATOM 1343 CA ALA A 183 15.802 -2.116 10.256 1.00 5.96 C </line>
<line>ATOM 1348 CA GLY A 184 18.142 -3.935 7.908 1.00 7.46 C </line>
<line>ATOM 1352 CA GLY A 185 21.227 -2.416 6.308 1.00 10.45 C </line>
<line>ATOM 1356 CA ASP A 186 22.846 -5.671 5.137 1.00 11.48 C </line>
<line>ATOM 1364 CA GLY A 187 23.240 -4.334 1.583 1.00 11.52 C </line>
<line>ATOM 1368 CA VAL A 188 21.009 -7.002 -0.006 1.00 10.98 C </line>
<line>ATOM 1375 CA ARG A 188A 17.599 -6.552 1.674 1.00 9.49 C </line>
<line>ATOM 1386 CA SER A 189 15.629 -3.326 2.196 1.00 7.36 C </line>
<line>ATOM 1392 CA GLY A 190 12.529 -1.286 1.590 1.00 4.92 C </line>
<line>ATOM 1396 CA CYS A 191 12.332 0.760 -1.611 1.00 5.15 C </line>
</atom-coordinate>
<distance-map>
<line> CYS GLY SER ARG VAL GLY ASP GLY GLY ALA CYS </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>CYS CA 13.80 10.96 10.66 12.97 15.42 13.95 12.07 8.70 7.02 3.78 </line>
<line>ALA CA 12.69 9.30 8.15 9.83 12.50 11.64 9.41 6.72 3.78 </line>
<line>GLY CA 12.10 8.86 6.27 6.78 8.96 8.13 5.73 3.79 </line>
<line>GLY CA 12.33 9.96 7.01 7.19 7.81 5.48 3.82 </line>
<line>ASP CA 14.05 11.76 8.14 6.35 5.62 3.82 </line>
<line>GLY CA 12.46 11.14 7.70 6.06 3.82 </line>
<line>VAL CA 11.75 10.35 6.88 3.83 </line>
<line>ARG CA 9.59 7.31 3.82 </line>
<line>SER CA 6.49 3.76 </line>
<line>GLY CA 3.80 </line>
<line>CYS CA </line>
</distance-map>
<n14>
<line>CYS CA 524</line>
<line>ALA CA 539</line>
<line>GLY CA 439</line>
<line>GLY CA 381</line>
<line>ASP CA 282</line>
<line>GLY CA 270</line>
<line>VAL CA 255</line>
<line>ARG CA 363</line>
<line>SER CA 465</line>
<line>GLY CA 530</line>
<line>CYS CA 455</line>
</n14>
</entryChain>
<parallel>
<x>14.576000213623047</x>
<y>29.305999755859375</y>
<z>9.609999656677246</z>
</parallel>
<rotation>
<x>0.902999997138977</x>
<y>0.3869999945163727</y>
<z>0.1850000023841858</z>
<x>0.42800000309944153</x>
<y>-0.8489999771118164</y>
<z>-0.3089999854564667</z>
<x>0.03799999877810478</x>
<y>0.3580000102519989</y>
<z>-0.9330000281333923</z>
</rotation>
<rmsd>1.9106489419937134</rmsd>
<dmax>2.738621950149536</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>2IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2IOTA</entryIDChain>
<sequence>YVGVQ--KIVVH</sequence>
<secondary-structure>EEE --EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 548 CA TYR A 82 -11.700 -1.816 -3.249 1.00 11.36 C </line>
<line>ATOM 560 CA VAL A 83 -12.685 1.143 -1.037 1.00 11.67 C </line>
<line>ATOM 567 CA GLY A 84 -12.353 4.916 -1.420 1.00 11.38 C </line>
<line>ATOM 571 CA VAL A 85 -10.700 7.244 1.103 1.00 12.77 C </line>
<line>ATOM 578 CA GLN A 86 -13.278 9.431 2.904 1.00 15.13 C </line>
<line>ATOM 587 CA LYS A 87 -10.975 11.474 5.174 1.00 13.76 C </line>
<line>ATOM 596 CA ILE A 88 -7.204 11.965 5.435 1.00 11.56 C </line>
<line>ATOM 604 CA VAL A 89 -5.829 12.849 8.878 1.00 10.82 C </line>
<line>ATOM 611 CA VAL A 90 -2.111 13.648 8.703 1.00 10.59 C </line>
<line>ATOM 618 CA HIS A 91 -0.064 14.216 11.899 1.00 11.15 C </line>
</atom-coordinate>
<distance-map>
<line> HIS VAL VAL ILE LYS GLN VAL GLY VAL TYR </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>TYR CA 24.94 21.77 19.91 16.90 15.75 12.92 10.10 7.01 3.82 </line>
<line>VAL CA 22.31 19.05 16.80 13.75 12.17 9.20 6.76 3.81 </line>
<line>GLY CA 20.37 16.84 14.54 11.10 9.40 6.32 3.81 </line>
<line>VAL CA 16.68 13.14 10.75 7.30 5.88 3.83 </line>
<line>GLN CA 16.69 13.27 10.14 7.05 3.82 </line>
<line>LYS CA 13.11 9.79 6.49 3.81 </line>
<line>ILE CA 9.89 6.28 3.81 </line>
<line>VAL CA 6.65 3.81 </line>
<line>VAL CA 3.84 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>TYR CA 350</line>
<line>VAL CA 340</line>
<line>GLY CA 314</line>
<line>VAL CA 369</line>
<line>GLN CA 258</line>
<line>LYS CA 295</line>
<line>ILE CA 365</line>
<line>VAL CA 362</line>
<line>VAL CA 383</line>
<line>HIS CA 358</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1FON</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1FONB</entryIDChain>
<sequence>VIPINAGDLFVH</sequence>
<secondary-structure>EE EEEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 2258 CA VAL B 69 13.673 0.779 5.461 1.00 7.75 C </line>
<line>ATOM 2265 CA ILE B 70 14.437 0.657 1.722 1.00 9.47 C </line>
<line>ATOM 2273 CA PRO B 71 16.960 -1.825 0.259 1.00 9.07 C </line>
<line>ATOM 2280 CA ILE B 72 19.456 -0.554 -2.332 1.00 8.09 C </line>
<line>ATOM 2288 CA ASN B 73 19.910 -2.642 -5.560 1.00 7.56 C </line>
<line>ATOM 2296 CA ALA B 74 23.397 -3.848 -6.319 1.00 11.10 C </line>
<line>ATOM 2301 CA GLY B 75 24.699 -1.299 -8.811 1.00 12.51 C </line>
<line>ATOM 2305 CA ASP B 76 22.582 1.579 -7.552 1.00 11.25 C </line>
<line>ATOM 2313 CA LEU B 77 25.479 3.377 -5.869 1.00 11.51 C </line>
<line>ATOM 2321 CA PHE B 78 27.192 6.079 -7.899 1.00 8.10 C </line>
<line>ATOM 2332 CA VAL B 79 30.454 7.533 -6.689 1.00 9.76 C </line>
<line>ATOM 2339 CA HIS B 80 31.982 10.583 -8.322 1.00 9.06 C </line>
</atom-coordinate>
<distance-map>
<line> HIS VAL PHE LEU ASP GLY ALA ASN ILE PRO ILE VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 24.93 21.79 19.73 16.57 15.79 18.15 15.96 13.12 9.80 6.68 3.82 </line>
<line>ILE CA 22.52 19.35 16.87 13.67 12.38 14.84 12.85 9.69 6.56 3.83 </line>
<line>PRO CA 21.29 17.83 15.29 11.71 10.21 11.93 9.42 6.58 3.82 </line>
<line>ILE CA 17.80 14.33 11.61 8.01 6.45 8.37 6.50 3.87 </line>
<line>ASN CA 18.12 14.70 11.60 8.21 5.38 5.94 3.77 </line>
<line>ALA CA 16.91 13.40 10.74 7.53 5.62 3.80 </line>
<line>GLY CA 13.95 10.75 7.84 5.58 3.79 </line>
<line>ASP CA 13.04 9.91 6.45 3.80 </line>
<line>LEU CA 10.01 6.53 3.79 </line>
<line>PHE CA 6.59 3.77 </line>
<line>VAL CA 3.78 </line>
<line>HIS CA </line>
</distance-map>
<n14>
<line>VAL CA 345</line>
<line>ILE CA 345</line>
<line>PRO CA 311</line>
<line>ILE CA 359</line>
<line>ASN CA 262</line>
<line>ALA CA 221</line>
<line>GLY CA 226</line>
<line>ASP CA 322</line>
<line>LEU CA 393</line>
<line>PHE CA 387</line>
<line>VAL CA 381</line>
<line>HIS CA 360</line>
</n14>
</entryChain>
<parallel>
<x>-30.552000045776367</x>
<y>6.21999979019165</y>
<z>4.945000171661377</z>
</parallel>
<rotation>
<x>0.6800000071525574</x>
<y>0.7289999723434448</y>
<z>-0.0820000022649765</z>
<x>0.5619999766349792</x>
<y>-0.4449999928474426</y>
<z>0.6970000267028809</z>
<x>0.47200000286102295</x>
<y>-0.5199999809265137</y>
<z>-0.7120000123977661</z>
</rotation>
<rmsd>0.8136540055274963</rmsd>
<dmax>1.5358539819717407</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>2IOT</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>2IOTA</entryIDChain>
<sequence>HCLVN-GQYAV</sequence>
<secondary-structure>EEEE - EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 1452 CA HIS A 200 6.121 -6.629 11.299 1.00 4.54 C </line>
<line>ATOM 1462 CA CYS A 201 8.102 -7.544 14.417 1.00 6.60 C </line>
<line>ATOM 1468 CA LEU A 202 7.920 -10.707 16.524 1.00 9.74 C </line>
<line>ATOM 1476 CA VAL A 203 7.270 -9.901 20.198 1.00 12.43 C </line>
<line>ATOM 1483 CA ASN A 204 6.384 -12.747 22.610 1.00 13.02 C </line>
<line>ATOM 1491 CA GLY A 205 5.317 -15.035 19.771 1.00 10.79 C </line>
<line>ATOM 1495 CA GLN A 206 3.014 -12.536 18.032 1.00 10.90 C </line>
<line>ATOM 1504 CA TYR A 207 3.762 -10.290 15.045 1.00 9.85 C </line>
<line>ATOM 1516 CA ALA A 208 2.962 -6.617 15.608 1.00 7.40 C </line>
<line>ATOM 1521 CA VAL A 209 3.287 -3.604 13.302 1.00 4.93 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ALA TYR GLN GLY ASN VAL LEU CYS HIS </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>HIS CA 4.60 5.34 5.74 9.48 11.96 12.86 9.55 6.87 3.81 </line>
<line>CYS CA 6.32 5.36 5.17 7.99 9.62 9.86 6.30 3.80 </line>
<line>LEU CA 9.07 6.49 4.43 5.45 6.00 6.60 3.82 </line>
<line>VAL CA 10.15 7.10 6.25 5.45 5.51 3.83 </line>
<line>ASN CA 13.41 9.92 8.38 5.69 3.80 </line>
<line>GLY CA 13.29 9.68 6.88 3.82 </line>
<line>GLN CA 10.11 6.40 3.81 </line>
<line>TYR CA 6.93 3.80 </line>
<line>ALA CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>HIS CA 478</line>
<line>CYS CA 404</line>
<line>LEU CA 297</line>
<line>VAL CA 241</line>
<line>ASN CA 148</line>
<line>GLY CA 146</line>
<line>GLN CA 208</line>
<line>TYR CA 320</line>
<line>ALA CA 394</line>
<line>VAL CA 507</line>
</n14>
</entryChain>
<entryChain>
<pdbID>1FON</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>1FONB</entryIDChain>
<sequence>NCPAADGSWQV</sequence>
<secondary-structure>EEEE EEEE</secondary-structure>
<atom-coordinate>
<line>ATOM 3173 CA ASN B 192 21.318 22.586 5.191 1.00 9.04 C </line>
<line>ATOM 3181 CA CYS B 193 21.016 26.295 4.517 1.00 10.25 C </line>
<line>ATOM 3187 CA PRO B 194 18.033 28.654 4.180 1.00 20.05 C </line>
<line>ATOM 3194 CA ALA B 195 17.703 30.151 0.681 1.00 27.37 C </line>
<line>ATOM 3199 CA ALA B 196 16.563 33.735 0.036 1.00 40.02 C </line>
<line>ATOM 3204 CA ASP B 197 13.058 32.380 -0.754 1.00 47.45 C </line>
<line>ATOM 3212 CA GLY B 198 12.687 30.675 2.613 1.00 41.92 C </line>
<line>ATOM 3216 CA SER B 199 13.278 27.145 1.273 1.00 32.34 C </line>
<line>ATOM 3222 CA TRP B 200 16.042 24.919 2.639 1.00 25.55 C </line>
<line>ATOM 3236 CA GLN B 201 18.859 23.691 0.404 1.00 11.69 C </line>
<line>ATOM 3245 CA VAL B 202 21.569 21.067 0.929 1.00 6.53 C </line>
</atom-coordinate>
<distance-map>
<line> VAL GLN TRP SER GLY ASP ALA ALA PRO CYS ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 4.53 5.49 6.31 10.04 12.11 14.12 13.17 9.52 6.97 3.78 </line>
<line>CYS CA 6.36 5.32 5.49 8.43 9.60 11.32 9.76 6.37 3.82 </line>
<line>PRO CA 8.98 6.29 4.50 5.77 5.93 7.94 6.72 3.82 </line>
<line>ALA CA 9.88 6.57 5.83 5.38 5.40 5.35 3.82 </line>
<line>ALA CA 13.65 10.31 9.21 7.47 5.57 3.84 </line>
<line>ASP CA 14.26 10.51 8.72 5.62 3.79 </line>
<line>GLY CA 13.19 9.58 6.66 3.82 </line>
<line>SER CA 10.29 6.62 3.80 </line>
<line>TRP CA 6.95 3.80 </line>
<line>GLN CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>ASN CA 489</line>
<line>CYS CA 393</line>
<line>PRO CA 288</line>
<line>ALA CA 229</line>
<line>ALA CA 155</line>
<line>ASP CA 111</line>
<line>GLY CA 161</line>
<line>SER CA 215</line>
<line>TRP CA 318</line>
<line>GLN CA 392</line>
<line>VAL CA 508</line>
</n14>
</entryChain>
<parallel>
<x>-11.093999862670898</x>
<y>-38.694000244140625</y>
<z>14.595999717712402</z>
</parallel>
<rotation>
<x>0.5699999928474426</x>
<y>0.8190000057220459</y>
<z>-0.057999998331069946</z>
<x>0.6000000238418579</x>
<y>-0.367000013589859</y>
<z>0.7110000252723694</z>
<x>0.5609999895095825</x>
<y>-0.4399999976158142</y>
<z>-0.7009999752044678</z>
</rotation>
<rmsd>0.715116024017334</rmsd>
<dmax>1.5519499778747559</dmax>
</indel>