NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GAEO-3CIFA
confEVID 1GAEO-3CIFA
pdbIDA 1GAE
pdbIDB 3CIF
pdbChainA O
pdbChainB A
identity 0.606000006198883
indelSize 3
alignment <alignment>
<seq1>TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA--GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPS--HKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDTETGYSNKVLDLIAHISK---</seq1>
<seq2>TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSILDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL</seq2>
<ss_1> EEEEEE HHHHHHHHHGGG EEE EEE - HHHHHHHHH EEEEE EEEE EEEEEE EEEE HHHGGHHHH EEEE GGG -- EE HHHHHHHHHHHHHHHHH EEEEEEEE -- GGG EEE GGHHHH EEEEEE EEEEEEEEEE HHHHHHHHHHHHH EEE GGGG EEEE EEEEEEEEEEEE HHHHHHHHHHHHHH ---</ss_1>
<ss_2> EEEEEE HHHHHHHHHHH EEE EEE HHHHHHHHH EEEEE EEEE EEEEEE EEEE HHHGGHHHH EEEE GGG HHHH EE HHHHHHHHHHHHHHH EEEEEEEE GGGG EEE HHHHHHHH EEEEEE EEEEEEEE HHHHHHHHHHHH EEE GGGG EEEE EEEEEEEEEEEE HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>AINDL-LDADY</sequence>
<secondary-structure>EEE - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 228 CA ALA O 29 24.231 88.374 20.182 1.00 21.27 C </line>
<line>ATOM 233 CA ILE O 30 20.885 87.713 21.842 1.00 23.77 C </line>
<line>ATOM 241 CA ASN O 31 18.143 90.154 22.793 1.00 23.68 C </line>
<line>ATOM 249 CA ASP O 32 15.238 89.435 25.114 1.00 24.44 C </line>
<line>ATOM 257 CA LEU O 33 13.523 91.015 28.107 1.00 35.38 C </line>
<line>ATOM 265 CA LEU O 34 15.004 88.405 30.495 1.00 35.74 C </line>
<line>ATOM 273 CA ASP O 36 18.204 88.692 32.540 1.00 36.62 C </line>
<line>ATOM 281 CA ALA O 37 21.318 86.812 31.442 1.00 31.20 C </line>
<line>ATOM 286 CA ASP O 38 21.081 84.573 34.504 1.00 31.02 C </line>
<line>ATOM 294 CA TYR O 39 17.620 83.336 33.616 1.00 20.62 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP ALA ASP LEU LEU ASP ASN ILE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.80 15.15 11.74 13.75 13.84 13.58 10.31 6.86 3.79 </line>
<line>ILE CA 12.98 13.05 9.65 11.07 10.49 10.22 6.75 3.79 </line>
<line>ASN CA 12.80 13.30 9.80 9.86 8.50 7.09 3.79 </line>
<line>ASP CA 10.73 12.08 9.16 8.03 5.48 3.79 </line>
<line>LEU CA 10.30 11.81 9.46 6.85 3.84 </line>
<line>LEU CA 6.50 8.23 6.58 3.81 </line>
<line>ASP CA 5.49 5.39 3.80 </line>
<line>ALA CA 5.52 3.80 </line>
<line>ASP CA 3.78 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 467</line>
<line>ILE CA 517</line>
<line>ASN CA 462</line>
<line>ASP CA 388</line>
<line>LEU CA 273</line>
<line>LEU CA 255</line>
<line>ASP CA 250</line>
<line>ALA CA 317</line>
<line>ASP CA 257</line>
<line>TYR CA 254</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3CIFA</entryIDChain>
<sequence>AINDPFMDVEY</sequence>
<secondary-structure>EEE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 220 CA ALA A 31 29.438 134.329 34.560 1.00 20.75 C </line>
<line>ATOM 225 CA ILE A 32 32.788 132.939 33.357 1.00 20.04 C </line>
<line>ATOM 233 CA ASN A 33 36.323 134.217 33.956 1.00 19.87 C </line>
<line>ATOM 241 CA ASP A 34 39.415 133.082 32.030 1.00 20.11 C </line>
<line>ATOM 249 CA PRO A 35 42.171 135.545 30.993 1.00 21.07 C </line>
<line>ATOM 256 CA PHE A 36 43.660 133.060 28.499 1.00 22.27 C </line>
<line>ATOM 267 CA MET A 37 40.638 132.990 26.174 1.00 22.32 C </line>
<line>ATOM 275 CA ASP A 38 38.438 135.748 24.744 1.00 22.80 C </line>
<line>ATOM 283 CA VAL A 39 34.652 135.429 24.288 1.00 22.64 C </line>
<line>ATOM 290 CA GLU A 40 35.015 133.988 20.753 1.00 23.04 C </line>
<line>ATOM 299 CA TYR A 41 37.522 131.376 21.988 1.00 21.03 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU VAL ASP MET PHE PRO ASP ASN ILE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.24 14.89 11.57 13.39 14.06 15.51 13.28 10.37 6.91 3.82 </line>
<line>ILE CA 12.41 12.84 9.59 10.68 10.64 11.91 10.02 6.76 3.81 </line>
<line>ASN CA 12.36 13.27 9.89 9.57 8.98 9.22 6.69 3.82 </line>
<line>ASP CA 10.36 12.14 9.39 7.82 5.98 5.52 3.84 </line>
<line>PRO CA 10.96 12.59 10.08 7.28 5.67 3.82 </line>
<line>PHE CA 9.11 11.64 10.22 6.97 3.81 </line>
<line>MET CA 5.46 7.87 6.73 3.81 </line>
<line>ASP CA 5.25 5.54 3.83 </line>
<line>VAL CA 5.47 3.83 </line>
<line>GLU CA 3.83 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 458</line>
<line>ILE CA 529</line>
<line>ASN CA 472</line>
<line>ASP CA 396</line>
<line>PRO CA 286</line>
<line>PHE CA 247</line>
<line>MET CA 272</line>
<line>ASP CA 269</line>
<line>VAL CA 314</line>
<line>GLU CA 262</line>
<line>TYR CA 283</line>
</n14>
</entryChain>
<parallel>
<x>-18.415000915527344</x>
<y>-45.459999084472656</y>
<z>-3.447999954223633</z>
</parallel>
<rotation>
<x>-0.9079999923706055</x>
<y>0.30300000309944153</y>
<z>0.29100000858306885</z>
<x>0.38600000739097595</x>
<y>0.875</y>
<z>0.2919999957084656</z>
<x>-0.16599999368190765</x>
<y>0.3779999911785126</y>
<z>-0.9110000133514404</z>
</rotation>
<rmsd>0.5589240193367004</rmsd>
<dmax>1.0668469667434692</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>FDKYA--GQDIV</sequence>
<secondary-structure>GGG -- E</secondary-structure>
<atom-coordinate>
<line>ATOM 1032 CA PHE O 134 14.385 78.222 -1.899 1.00 21.03 C </line>
<line>ATOM 1043 CA ASP O 135 15.289 78.471 -5.598 1.00 30.58 C </line>
<line>ATOM 1051 CA LYS O 136 12.819 81.342 -5.998 1.00 24.92 C </line>
<line>ATOM 1060 CA TYR O 137 14.711 83.591 -3.571 1.00 22.88 C </line>
<line>ATOM 1072 CA ALA O 138 15.499 86.881 -5.314 1.00 24.55 C </line>
<line>ATOM 1077 CA GLY O 138A 17.661 89.011 -3.016 1.00 17.70 C </line>
<line>ATOM 1081 CA GLN O 141 14.932 90.037 -0.555 1.00 17.01 C </line>
<line>ATOM 1090 CA ASP O 142 16.405 91.373 2.701 1.00 19.02 C </line>
<line>ATOM 1098 CA ILE O 143 13.467 90.336 4.904 1.00 17.19 C </line>
<line>ATOM 1106 CA VAL O 144 12.024 86.825 4.547 1.00 18.72 C </line>
</atom-coordinate>
<distance-map>
<line> VAL ILE ASP GLN GLY ALA TYR LYS ASP PHE </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>PHE CA 11.01 13.92 14.08 11.90 11.33 9.37 5.63 5.38 3.82 </line>
<line>ASP CA 13.54 15.95 15.38 12.62 11.11 8.42 5.54 3.81 </line>
<line>LYS CA 11.91 14.15 13.75 10.47 9.55 6.19 3.81 </line>
<line>TYR CA 9.14 10.90 10.14 7.12 6.20 3.81 </line>
<line>ALA CA 10.46 10.98 9.23 5.74 3.81 </line>
<line>GLY CA 9.68 9.06 6.31 3.82 </line>
<line>GLN CA 6.69 5.66 3.82 </line>
<line>ASP CA 6.58 3.82 </line>
<line>ILE CA 3.81 </line>
<line>VAL CA </line>
</distance-map>
<n14>
<line>PHE CA 358</line>
<line>ASP CA 244</line>
<line>LYS CA 234</line>
<line>TYR CA 268</line>
<line>ALA CA 202</line>
<line>GLY CA 226</line>
<line>GLN CA 283</line>
<line>ASP CA 346</line>
<line>ILE CA 425</line>
<line>VAL CA 453</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3CIFA</entryIDChain>
<sequence>NTEYDPSKFNVI</sequence>
<secondary-structure>GGG HHHH E</secondary-structure>
<atom-coordinate>
<line>ATOM 1018 CA ASN A 137 28.716 116.394 52.483 1.00 21.36 C </line>
<line>ATOM 1026 CA THR A 138 26.089 116.758 55.257 1.00 22.52 C </line>
<line>ATOM 1033 CA GLU A 139 28.898 117.784 57.636 1.00 23.37 C </line>
<line>ATOM 1042 CA TYR A 140 28.926 121.123 55.780 1.00 23.32 C </line>
<line>ATOM 1054 CA ASP A 141 27.595 124.059 57.816 1.00 24.70 C </line>
<line>ATOM 1062 CA PRO A 142 26.917 127.406 56.046 1.00 25.40 C </line>
<line>ATOM 1069 CA SER A 143 27.585 129.293 59.311 1.00 26.42 C </line>
<line>ATOM 1075 CA LYS A 144 31.094 127.778 59.513 1.00 26.01 C </line>
<line>ATOM 1084 CA PHE A 145 32.453 127.900 55.933 1.00 24.57 C </line>
<line>ATOM 1095 CA ASN A 146 32.301 130.153 52.867 1.00 23.15 C </line>
<line>ATOM 1103 CA VAL A 147 35.178 128.389 51.070 1.00 21.42 C </line>
<line>ATOM 1110 CA ILE A 148 35.051 124.608 50.571 1.00 19.56 C </line>
</atom-coordinate>
<distance-map>
<line> ILE VAL ASN PHE LYS SER PRO ASP TYR GLU THR ASN </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ASN CA 10.55 13.70 14.22 12.58 13.59 14.64 11.71 9.40 5.77 5.34 3.84 </line>
<line>THR CA 12.80 15.34 14.96 12.85 12.83 13.26 10.71 7.88 5.23 3.82 </line>
<line>GLU CA 11.59 13.96 13.69 10.86 10.40 11.70 9.95 6.41 3.82 </line>
<line>TYR CA 8.76 10.68 10.07 7.64 7.93 9.00 6.60 3.81 </line>
<line>ASP CA 10.41 11.03 9.15 6.47 5.38 5.44 3.85 </line>
<line>PRO CA 10.20 9.69 6.83 5.56 5.44 3.83 </line>
<line>SER CA 12.41 11.24 8.03 6.09 3.83 </line>
<line>LYS CA 10.28 9.40 7.16 3.83 </line>
<line>PHE CA 6.81 5.60 3.81 </line>
<line>ASN CA 6.60 3.82 </line>
<line>VAL CA 3.82 </line>
<line>ILE CA </line>
</distance-map>
<n14>
<line>ASN CA 392</line>
<line>THR CA 282</line>
<line>GLU CA 266</line>
<line>TYR CA 308</line>
<line>ASP CA 245</line>
<line>PRO CA 259</line>
<line>SER CA 177</line>
<line>LYS CA 200</line>
<line>PHE CA 311</line>
<line>ASN CA 370</line>
<line>VAL CA 437</line>
<line>ILE CA 491</line>
</n14>
</entryChain>
<parallel>
<x>-14.277999877929688</x>
<y>-37.41600036621094</y>
<z>-58.1609992980957</z>
</parallel>
<rotation>
<x>-0.9049999713897705</x>
<y>0.2029999941587448</y>
<z>0.375</z>
<x>0.37299999594688416</x>
<y>0.8029999732971191</y>
<z>0.4650000035762787</z>
<x>-0.20600000023841858</x>
<y>0.5600000023841858</y>
<z>-0.8019999861717224</z>
</rotation>
<rmsd>1.8542189598083496</rmsd>
<dmax>2.898250102996826</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>VDGPS--HKDWR</sequence>
<secondary-structure> -- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1400 CA VAL O 185 -5.888 73.640 33.406 1.00 65.74 C </line>
<line>ATOM 1407 CA ASP O 186 -9.180 75.131 32.122 1.00 55.82 C </line>
<line>ATOM 1415 CA GLY O 187 -8.268 78.795 31.820 1.00 65.08 C </line>
<line>ATOM 1419 CA PRO O 188 -9.220 81.970 29.846 1.00 73.80 C </line>
<line>ATOM 1426 CA SER O 189 -8.506 82.079 26.104 1.00 72.38 C </line>
<line>ATOM 1432 CA HIS O 190 -10.715 84.738 24.505 1.00 68.00 C </line>
<line>ATOM 1442 CA LYS O 191 -9.027 84.298 21.124 1.00 61.26 C </line>
<line>ATOM 1451 CA ASP O 192 -9.807 80.564 21.021 1.00 44.19 C </line>
<line>ATOM 1459 CA TRP O 193 -12.100 79.090 23.662 1.00 25.12 C </line>
<line>ATOM 1473 CA ARG O 194 -11.150 75.469 22.929 1.00 17.99 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ASP LYS HIS SER PRO GLY ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.87 12.78 14.72 16.56 15.02 11.46 9.65 5.90 3.84 </line>
<line>ASP CA 9.41 9.79 12.38 14.32 12.36 9.22 7.21 3.79 </line>
<line>GLY CA 9.92 9.02 11.05 12.05 9.74 6.60 3.86 </line>
<line>PRO CA 9.69 7.40 8.96 9.03 6.20 3.81 </line>
<line>SER CA 7.80 5.27 5.46 5.48 3.81 </line>
<line>HIS CA 9.41 5.88 5.51 3.80 </line>
<line>LYS CA 9.26 6.56 3.82 </line>
<line>ASP CA 5.60 3.80 </line>
<line>TRP CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 170</line>
<line>ASP CA 187</line>
<line>GLY CA 174</line>
<line>PRO CA 153</line>
<line>SER CA 180</line>
<line>HIS CA 128</line>
<line>LYS CA 137</line>
<line>ASP CA 200</line>
<line>TRP CA 189</line>
<line>ARG CA 259</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>A</pdbChain>
<entryIDChain>3CIFA</entryIDChain>
<sequence>VDGPSKGGKDWR</sequence>
<secondary-structure> GG</secondary-structure>
<atom-coordinate>
<line>ATOM 1408 CA VAL A 189 56.446 115.609 23.903 1.00 16.27 C </line>
<line>ATOM 1415 CA ASP A 190 59.363 115.324 26.368 1.00 17.69 C </line>
<line>ATOM 1423 CA GLY A 191 59.685 118.671 28.142 1.00 20.39 C </line>
<line>ATOM 1427 CA PRO A 192 59.934 120.531 31.458 1.00 23.35 C </line>
<line>ATOM 1434 CA SER A 193 56.952 120.301 33.822 1.00 27.20 C </line>
<line>ATOM 1440 CA LYS A 194 55.458 123.550 35.177 1.00 30.91 C </line>
<line>ATOM 1449 CA GLY A 195 57.500 124.914 38.087 1.00 32.33 C </line>
<line>ATOM 1453 CA GLY A 196 60.330 122.379 37.984 1.00 32.55 C </line>
<line>ATOM 1457 CA LYS A 197 59.067 119.263 39.773 1.00 31.60 C </line>
<line>ATOM 1466 CA ASP A 198 57.184 116.083 38.756 1.00 28.68 C </line>
<line>ATOM 1474 CA TRP A 199 59.632 115.207 35.966 1.00 24.15 C </line>
<line>ATOM 1488 CA ARG A 200 57.722 112.096 34.843 1.00 21.00 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ASP LYS GLY GLY LYS SER PRO GLY ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.56 12.48 14.88 16.49 16.10 17.00 13.83 10.98 9.67 6.15 3.83 </line>
<line>ASP CA 9.22 9.60 12.60 13.97 13.62 15.26 12.67 9.28 7.30 3.80 </line>
<line>GLY CA 9.59 8.56 11.21 11.66 10.54 11.94 9.55 6.51 3.81 </line>
<line>PRO CA 9.35 6.98 8.98 8.46 6.79 8.31 6.56 3.81 </line>
<line>SER CA 8.30 6.14 6.50 6.40 5.75 6.31 3.82 </line>
<line>LYS CA 11.68 9.36 8.46 7.25 5.74 3.81 </line>
<line>GLY CA 13.22 10.16 8.86 6.10 3.80 </line>
<line>GLY CA 11.06 7.48 7.08 3.81 </line>
<line>LYS CA 8.80 5.59 3.83 </line>
<line>ASP CA 5.61 3.81 </line>
<line>TRP CA 3.82 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 165</line>
<line>ASP CA 179</line>
<line>GLY CA 169</line>
<line>PRO CA 158</line>
<line>SER CA 196</line>
<line>LYS CA 161</line>
<line>GLY CA 118</line>
<line>GLY CA 111</line>
<line>LYS CA 140</line>
<line>ASP CA 214</line>
<line>TRP CA 208</line>
<line>ARG CA 266</line>
</n14>
</entryChain>
<parallel>
<x>-67.4469985961914</x>
<y>-38.36800003051758</y>
<z>-5.0320000648498535</z>
</parallel>
<rotation>
<x>-0.9440000057220459</x>
<y>0.1679999977350235</y>
<z>0.2849999964237213</z>
<x>0.26499998569488525</x>
<y>0.8999999761581421</y>
<z>0.34599998593330383</z>
<x>-0.19900000095367432</x>
<y>0.4020000100135803</y>
<z>-0.8939999938011169</z>
</rotation>
<rmsd>0.9877259731292725</rmsd>
<dmax>1.5686249732971191</dmax>
</indel>