NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
タンパク質結合による構造変化のデータ | タンパク質結合による構造変化の補助データ | 進化的構造変化データ | 構造的ゆらぎデータ
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Data of conformation changes by some binding | Supplement data for conformation changes by some binding | Data of evolutionary structure change | Data of structural flexibility
1GAEO-3CIFB
confEVID 1GAEO-3CIFB
pdbIDA 1GAE
pdbIDB 3CIF
pdbChainA O
pdbChainB B
identity 0.606000006198883
indelSize 3
alignment <alignment>
<seq1>TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG--QDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPS--HKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDTETGYSNKVLDLIAHISK---</seq1>
<seq2>TATLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSILDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVASRGL</seq2>
<ss_1> EEEEEE HHHHHHHHHGGG EEE EEE - HHHHHHHHH EEEEE EEEE EEEEEE EEEE HHHGGHHHH EEEE GGG -- EE HHHHHHHHHHHHHHHHH EEEEEEEE -- GGG EEE GGHHHH EEEEEE EEEEEEEEEE HHHHHHHHHHHHH EEE GGGG EEEE EEEEEEEEEEEE HHHHHHHHHHHHHH ---</ss_1>
<ss_2> EEEEEE HHHHHHHHHHH EEE EEE HHHHHHHHH EEEEE EEEE EEEEEE EEEE HHHGGGG EEEE GGG HHHH EE HHHHHHHHHHHHHHH EEEEEEEE GGG GGG EEE HHHHHHHH EEEEEE EEEEEEEE HHHHHHHHHHHHH EEE GGGG EEEE EEEEEEEEEE HHHHHHHHHHHHHHHH </ss_2>
</alignment>
indel <indel>
<confEVID></confEVID>
<index>0</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>AINDL-LDADY</sequence>
<secondary-structure>EEE - HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 228 CA ALA O 29 24.231 88.374 20.182 1.00 21.27 C </line>
<line>ATOM 233 CA ILE O 30 20.885 87.713 21.842 1.00 23.77 C </line>
<line>ATOM 241 CA ASN O 31 18.143 90.154 22.793 1.00 23.68 C </line>
<line>ATOM 249 CA ASP O 32 15.238 89.435 25.114 1.00 24.44 C </line>
<line>ATOM 257 CA LEU O 33 13.523 91.015 28.107 1.00 35.38 C </line>
<line>ATOM 265 CA LEU O 34 15.004 88.405 30.495 1.00 35.74 C </line>
<line>ATOM 273 CA ASP O 36 18.204 88.692 32.540 1.00 36.62 C </line>
<line>ATOM 281 CA ALA O 37 21.318 86.812 31.442 1.00 31.20 C </line>
<line>ATOM 286 CA ASP O 38 21.081 84.573 34.504 1.00 31.02 C </line>
<line>ATOM 294 CA TYR O 39 17.620 83.336 33.616 1.00 20.62 C </line>
</atom-coordinate>
<distance-map>
<line> TYR ASP ALA ASP LEU LEU ASP ASN ILE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.80 15.15 11.74 13.75 13.84 13.58 10.31 6.86 3.79 </line>
<line>ILE CA 12.98 13.05 9.65 11.07 10.49 10.22 6.75 3.79 </line>
<line>ASN CA 12.80 13.30 9.80 9.86 8.50 7.09 3.79 </line>
<line>ASP CA 10.73 12.08 9.16 8.03 5.48 3.79 </line>
<line>LEU CA 10.30 11.81 9.46 6.85 3.84 </line>
<line>LEU CA 6.50 8.23 6.58 3.81 </line>
<line>ASP CA 5.49 5.39 3.80 </line>
<line>ALA CA 5.52 3.80 </line>
<line>ASP CA 3.78 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 467</line>
<line>ILE CA 517</line>
<line>ASN CA 462</line>
<line>ASP CA 388</line>
<line>LEU CA 273</line>
<line>LEU CA 255</line>
<line>ASP CA 250</line>
<line>ALA CA 317</line>
<line>ASP CA 257</line>
<line>TYR CA 254</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3CIFB</entryIDChain>
<sequence>AINDPFMDVEY</sequence>
<secondary-structure>EEE HHH</secondary-structure>
<atom-coordinate>
<line>ATOM 2739 CA ALA B 31 65.880 77.637 10.950 1.00 16.33 C </line>
<line>ATOM 2744 CA ILE B 32 62.540 79.513 11.022 1.00 16.13 C </line>
<line>ATOM 2752 CA ASN B 33 59.000 78.210 10.446 1.00 16.60 C </line>
<line>ATOM 2760 CA ASP B 34 55.899 80.376 9.844 1.00 17.59 C </line>
<line>ATOM 2768 CA PRO B 35 53.157 79.421 7.319 1.00 19.27 C </line>
<line>ATOM 2775 CA PHE B 36 51.511 82.881 7.326 1.00 21.34 C </line>
<line>ATOM 2786 CA MET B 37 54.666 84.582 6.142 1.00 22.54 C </line>
<line>ATOM 2794 CA ASP B 38 56.697 83.944 2.986 1.00 22.82 C </line>
<line>ATOM 2802 CA VAL B 39 60.495 84.416 2.993 1.00 21.69 C </line>
<line>ATOM 2809 CA GLU B 40 60.261 87.941 1.500 1.00 21.20 C </line>
<line>ATOM 2818 CA TYR B 41 57.762 88.962 4.208 1.00 19.80 C </line>
</atom-coordinate>
<distance-map>
<line> TYR GLU VAL ASP MET PHE PRO ASP ASN ILE ALA </line>
<line> CA CA CA CA CA CA CA CA CA CA CA </line>
<line>ALA CA 15.48 15.07 11.76 13.69 14.04 15.72 13.35 10.41 6.92 3.83 </line>
<line>ILE CA 12.59 12.92 9.63 10.88 10.56 12.11 10.09 6.80 3.82 </line>
<line>ASN CA 12.49 13.28 9.81 9.69 8.83 9.36 6.74 3.83 </line>
<line>ASP CA 10.44 12.08 9.19 7.77 5.74 5.65 3.85 </line>
<line>PRO CA 11.04 12.53 9.87 7.19 5.50 3.83 </line>
<line>PHE CA 9.26 11.67 10.09 6.85 3.77 </line>
<line>MET CA 5.70 8.01 6.63 3.81 </line>
<line>ASP CA 5.27 5.56 3.83 </line>
<line>VAL CA 5.44 3.84 </line>
<line>GLU CA 3.82 </line>
<line>TYR CA </line>
</distance-map>
<n14>
<line>ALA CA 465</line>
<line>ILE CA 531</line>
<line>ASN CA 474</line>
<line>ASP CA 398</line>
<line>PRO CA 292</line>
<line>PHE CA 247</line>
<line>MET CA 281</line>
<line>ASP CA 267</line>
<line>VAL CA 316</line>
<line>GLU CA 262</line>
<line>TYR CA 282</line>
</n14>
</entryChain>
<parallel>
<x>-40.222999572753906</x>
<y>7.813000202178955</y>
<z>18.851999282836914</z>
</parallel>
<rotation>
<x>0.9120000004768372</x>
<y>-0.29100000858306885</y>
<z>-0.29100000858306885</z>
<x>-0.13099999725818634</x>
<y>-0.875</y>
<z>0.4659999907016754</z>
<x>-0.38999998569488525</x>
<y>-0.3869999945163727</y>
<z>-0.8360000252723694</z>
</rotation>
<rmsd>0.5314300060272217</rmsd>
<dmax>1.0306049585342407</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>1</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>DKYAG--QDIVS</sequence>
<secondary-structure>GG -- EE</secondary-structure>
<atom-coordinate>
<line>ATOM 1043 CA ASP O 135 15.289 78.471 -5.598 1.00 30.58 C </line>
<line>ATOM 1051 CA LYS O 136 12.819 81.342 -5.998 1.00 24.92 C </line>
<line>ATOM 1060 CA TYR O 137 14.711 83.591 -3.571 1.00 22.88 C </line>
<line>ATOM 1072 CA ALA O 138 15.499 86.881 -5.314 1.00 24.55 C </line>
<line>ATOM 1077 CA GLY O 138A 17.661 89.011 -3.016 1.00 17.70 C </line>
<line>ATOM 1081 CA GLN O 141 14.932 90.037 -0.555 1.00 17.01 C </line>
<line>ATOM 1090 CA ASP O 142 16.405 91.373 2.701 1.00 19.02 C </line>
<line>ATOM 1098 CA ILE O 143 13.467 90.336 4.904 1.00 17.19 C </line>
<line>ATOM 1106 CA VAL O 144 12.024 86.825 4.547 1.00 18.72 C </line>
<line>ATOM 1113 CA SER O 145 9.923 84.320 6.501 1.00 16.24 C </line>
</atom-coordinate>
<distance-map>
<line> SER VAL ILE ASP GLN GLY ALA TYR LYS ASP </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>ASP CA 14.47 13.54 15.95 15.38 12.62 11.11 8.42 5.54 3.81 </line>
<line>LYS CA 13.17 11.91 14.15 13.75 10.47 9.55 6.19 3.81 </line>
<line>TYR CA 11.18 9.14 10.90 10.14 7.12 6.20 3.81 </line>
<line>ALA CA 13.31 10.46 10.98 9.23 5.74 3.81 </line>
<line>GLY CA 13.13 9.68 9.06 6.31 3.82 </line>
<line>GLN CA 10.37 6.69 5.66 3.82 </line>
<line>ASP CA 10.31 6.58 3.82 </line>
<line>ILE CA 7.16 3.81 </line>
<line>VAL CA 3.81 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>ASP CA 244</line>
<line>LYS CA 234</line>
<line>TYR CA 268</line>
<line>ALA CA 202</line>
<line>GLY CA 226</line>
<line>GLN CA 283</line>
<line>ASP CA 346</line>
<line>ILE CA 425</line>
<line>VAL CA 453</line>
<line>SER CA 508</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3CIFB</entryIDChain>
<sequence>TEYDPSKFNVIS</sequence>
<secondary-structure>GG HHHH EE</secondary-structure>
<atom-coordinate>
<line>ATOM 3545 CA THR B 138 68.617 74.823 37.939 1.00 25.05 C </line>
<line>ATOM 3552 CA GLU B 139 65.768 72.426 38.798 1.00 25.64 C </line>
<line>ATOM 3561 CA TYR B 140 65.676 71.443 35.102 1.00 25.14 C </line>
<line>ATOM 3573 CA ASP B 141 66.498 67.768 34.540 1.00 25.67 C </line>
<line>ATOM 3581 CA PRO B 142 67.593 66.875 30.957 1.00 25.52 C </line>
<line>ATOM 3588 CA SER B 143 66.930 63.160 31.583 1.00 25.81 C </line>
<line>ATOM 3594 CA LYS B 144 63.280 63.919 32.448 1.00 25.25 C </line>
<line>ATOM 3603 CA PHE B 145 62.155 66.712 30.097 1.00 23.74 C </line>
<line>ATOM 3614 CA ASN B 146 62.588 67.389 26.379 1.00 21.99 C </line>
<line>ATOM 3622 CA VAL B 147 59.751 69.936 26.384 1.00 20.30 C </line>
<line>ATOM 3629 CA ILE B 148 59.886 72.903 28.777 1.00 19.06 C </line>
<line>ATOM 3637 CA SER B 149 58.439 76.421 29.191 1.00 18.07 C </line>
</atom-coordinate>
<distance-map>
<line> SER ILE VAL ASN PHE LYS SER PRO ASP TYR GLU THR </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>THR CA 13.52 12.80 15.36 15.01 13.00 13.32 13.39 10.63 8.11 5.30 3.82 </line>
<line>GLU CA 12.73 11.63 14.02 13.77 11.02 10.90 11.80 9.78 6.35 3.83 </line>
<line>TYR CA 10.59 8.70 10.65 10.10 7.73 8.33 9.09 6.46 3.81 </line>
<line>ASP CA 12.98 10.16 10.80 9.06 6.30 5.44 5.49 3.85 </line>
<line>PRO CA 13.34 10.02 9.58 6.80 5.51 5.44 3.83 </line>
<line>SER CA 15.93 12.35 11.16 7.99 6.13 3.83 </line>
<line>LYS CA 13.80 10.28 9.24 7.03 3.82 </line>
<line>PHE CA 10.44 6.72 5.47 3.80 </line>
<line>ASN CA 10.33 6.59 3.81 </line>
<line>VAL CA 7.19 3.81 </line>
<line>ILE CA 3.83 </line>
<line>SER CA </line>
</distance-map>
<n14>
<line>THR CA 278</line>
<line>GLU CA 263</line>
<line>TYR CA 311</line>
<line>ASP CA 247</line>
<line>PRO CA 262</line>
<line>SER CA 178</line>
<line>LYS CA 205</line>
<line>PHE CA 324</line>
<line>ASN CA 371</line>
<line>VAL CA 444</line>
<line>ILE CA 493</line>
<line>SER CA 523</line>
</n14>
</entryChain>
<parallel>
<x>-50.2599983215332</x>
<y>16.969999313354492</y>
<z>-34.07099914550781</z>
</parallel>
<rotation>
<x>0.9440000057220459</x>
<y>-0.1850000023841858</y>
<z>-0.27300000190734863</z>
<x>-0.11699999868869781</x>
<y>-0.9620000123977661</y>
<z>0.24899999797344208</z>
<x>-0.30799999833106995</x>
<y>-0.2029999941587448</y>
<z>-0.9290000200271606</z>
</rotation>
<rmsd>2.208203077316284</rmsd>
<dmax>3.7375009059906006</dmax>
</indel>
<indel>
<confEVID></confEVID>
<index>2</index>
<entryChain>
<pdbID>1GAE</pdbID>
<pdbChain>O</pdbChain>
<entryIDChain>1GAEO</entryIDChain>
<sequence>VDGPS--HKDWR</sequence>
<secondary-structure> -- G</secondary-structure>
<atom-coordinate>
<line>ATOM 1400 CA VAL O 185 -5.888 73.640 33.406 1.00 65.74 C </line>
<line>ATOM 1407 CA ASP O 186 -9.180 75.131 32.122 1.00 55.82 C </line>
<line>ATOM 1415 CA GLY O 187 -8.268 78.795 31.820 1.00 65.08 C </line>
<line>ATOM 1419 CA PRO O 188 -9.220 81.970 29.846 1.00 73.80 C </line>
<line>ATOM 1426 CA SER O 189 -8.506 82.079 26.104 1.00 72.38 C </line>
<line>ATOM 1432 CA HIS O 190 -10.715 84.738 24.505 1.00 68.00 C </line>
<line>ATOM 1442 CA LYS O 191 -9.027 84.298 21.124 1.00 61.26 C </line>
<line>ATOM 1451 CA ASP O 192 -9.807 80.564 21.021 1.00 44.19 C </line>
<line>ATOM 1459 CA TRP O 193 -12.100 79.090 23.662 1.00 25.12 C </line>
<line>ATOM 1473 CA ARG O 194 -11.150 75.469 22.929 1.00 17.99 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ASP LYS HIS SER PRO GLY ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.87 12.78 14.72 16.56 15.02 11.46 9.65 5.90 3.84 </line>
<line>ASP CA 9.41 9.79 12.38 14.32 12.36 9.22 7.21 3.79 </line>
<line>GLY CA 9.92 9.02 11.05 12.05 9.74 6.60 3.86 </line>
<line>PRO CA 9.69 7.40 8.96 9.03 6.20 3.81 </line>
<line>SER CA 7.80 5.27 5.46 5.48 3.81 </line>
<line>HIS CA 9.41 5.88 5.51 3.80 </line>
<line>LYS CA 9.26 6.56 3.82 </line>
<line>ASP CA 5.60 3.80 </line>
<line>TRP CA 3.81 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 170</line>
<line>ASP CA 187</line>
<line>GLY CA 174</line>
<line>PRO CA 153</line>
<line>SER CA 180</line>
<line>HIS CA 128</line>
<line>LYS CA 137</line>
<line>ASP CA 200</line>
<line>TRP CA 189</line>
<line>ARG CA 259</line>
</n14>
</entryChain>
<entryChain>
<pdbID>3CIF</pdbID>
<pdbChain>B</pdbChain>
<entryIDChain>3CIFB</entryIDChain>
<sequence>VDGPSKGGKDWR</sequence>
<secondary-structure> G</secondary-structure>
<atom-coordinate>
<line>ATOM 3932 CA VAL B 189 38.756 98.434 16.407 1.00 13.69 C </line>
<line>ATOM 3939 CA ASP B 190 35.813 96.872 18.297 1.00 14.25 C </line>
<line>ATOM 3947 CA GLY B 191 35.440 93.290 17.048 1.00 16.66 C </line>
<line>ATOM 3951 CA PRO B 192 35.167 89.611 18.014 1.00 19.82 C </line>
<line>ATOM 3958 CA SER B 193 38.118 87.983 19.783 1.00 24.01 C </line>
<line>ATOM 3964 CA LYS B 194 39.226 84.549 18.516 1.00 28.23 C </line>
<line>ATOM 3973 CA GLY B 195 36.861 81.976 20.057 1.00 30.12 C </line>
<line>ATOM 3977 CA GLY B 196 34.650 82.891 23.023 1.00 31.04 C </line>
<line>ATOM 3981 CA LYS B 197 37.750 84.154 24.854 1.00 30.23 C </line>
<line>ATOM 3990 CA ASP B 198 38.083 87.650 26.361 1.00 26.86 C </line>
<line>ATOM 3998 CA TRP B 199 35.411 90.059 25.037 1.00 21.58 C </line>
<line>ATOM 4012 CA ARG B 200 37.279 93.037 26.540 1.00 18.16 C </line>
</atom-coordinate>
<distance-map>
<line> ARG TRP ASP LYS GLY GLY LYS SER PRO GLY ASP VAL </line>
<line> CA CA CA CA CA CA CA CA CA CA CA CA </line>
<line>VAL CA 11.58 12.48 14.69 16.62 17.38 16.96 14.05 11.00 9.66 6.15 3.83 </line>
<line>ASP CA 9.21 9.59 12.46 14.44 14.80 15.04 12.79 9.30 7.30 3.81 </line>
<line>GLY CA 9.67 8.62 11.20 12.24 12.02 11.79 9.64 6.54 3.81 </line>
<line>PRO CA 9.43 7.04 9.06 9.12 8.40 8.08 6.51 3.81 </line>
<line>SER CA 8.48 6.26 6.59 6.36 6.96 6.14 3.82 </line>
<line>LYS CA 11.84 9.35 8.51 6.52 6.63 3.82 </line>
<line>GLY CA 12.83 9.60 8.57 5.34 3.81 </line>
<line>GLY CA 11.06 7.48 6.75 3.82 </line>
<line>LYS CA 9.05 6.35 3.82 </line>
<line>ASP CA 5.45 3.83 </line>
<line>TRP CA 3.82 </line>
<line>ARG CA </line>
</distance-map>
<n14>
<line>VAL CA 164</line>
<line>ASP CA 180</line>
<line>GLY CA 172</line>
<line>PRO CA 158</line>
<line>SER CA 190</line>
<line>LYS CA 153</line>
<line>GLY CA 112</line>
<line>GLY CA 103</line>
<line>LYS CA 161</line>
<line>ASP CA 216</line>
<line>TRP CA 208</line>
<line>ARG CA 266</line>
</n14>
</entryChain>
<parallel>
<x>-45.54899978637695</x>
<y>-9.958999633789062</y>
<z>7.019999980926514</z>
</parallel>
<rotation>
<x>0.9120000004768372</x>
<y>-0.19499999284744263</y>
<z>-0.3610000014305115</z>
<x>-0.04699999839067459</x>
<y>-0.9229999780654907</y>
<z>0.38100001215934753</z>
<x>-0.40700000524520874</x>
<y>-0.3310000002384186</y>
<z>-0.8510000109672546</z>
</rotation>
<rmsd>0.986644983291626</rmsd>
<dmax>2.1432089805603027</dmax>
</indel>